Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008168

Physical Location & Seq

Genomic Coordinates Forward (+)

64594935 .. 64598805

Gene Structure 3871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG481300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGATGTCTTCTTTCTGAAATACAGGTGGAAGAATCAAATTGGAAGAGCAGAAAGGATGGAAATGCAGCAATACTGTGCACATGAATGGAAGTCCATCTTAGGTGCAATAGCTGATTTTGAAAATTCTAAAGGCGGCTTTGACTGCAACATCTGCTCAGACTTTGCACACGAGCCAGTGGTCACCCTCTGTGGCCATCTGTACTGCTGGCCTTGCATCTACAAATGGCTTCACATCCAGAGCGCCTTCCTTGCATCTGATGAGTGCCCTGTTTGCAAGAAACAAGATGTATTTGAAGTGGAATGTGGCAATGTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0070647 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

106

Amino Acids

12.35

Weight (kDa)

5.46

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	48 - 93	1.9e-08	Ring finger domain
zf-RING_5	PF14634	48 - 94	1.7e-07	zinc-RING finger domain
zf-C3HC4_3	PF13920	48 - 94	2e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	49 - 92	2.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	49 - 92	1.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	49 - 76	5.5e-07	RING-type zinc-finger
zf-C3HC4_4	PF15227	49 - 92	1.7e-06	zinc finger of C3HC4-type, RING

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008168)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0362361 RchiOBHm_Chr2g0145341
rosa_multiflora	Rmu_sc0000079.1_g000040 Rmu_sc0000658.1_g000009 Rmu_sc0002824.1_g000018 Rmu_sc0004305.1_g000012 Rmu_sc0004593.1_g000007 Rmu_sc0004637.1_g000004 Rmu_sc0016426.1_g000005
rosa_rugosa	Rorug05G0063300
rosa_samantha	Rh1AG402100 Rh2AG481800 Rh2AG495200 Rh2CG468100 Rh2CG481300 Rh2DG005500 Rh2DG005600 Rh4AG086600 Rh4CG094500 Rh5AG024100 Rh5AG024200 Rh5CG027000
rosa_wichuraiana	Rw2G032630 Rw4G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	135
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	124
AfaI	GTAC	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	122, 296
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
Alw21I	GWGCWC	1 cut(s)	82
Alw44I	GTGCAC	1 cut(s)	78
AoxI	GGCC	2 cut(s)	193, 209
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	175
BaeGI	GKGCMC	2 cut(s)	82, 269
BalI	TGGCCA	1 cut(s)	195
BauI	CACGAG	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	3 cut(s)	52, 104, 204
BfoI	RGCGCY	1 cut(s)	246
BisI	GCNGC	2 cut(s)	68, 136
BlsI	GCNGC	2 cut(s)	69, 137
BmsI	GCATC	2 cut(s)	225, 263
Bse1I	ACTGG	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	316
BseGI	GGATG	3 cut(s)	10, 63, 234
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	176
BseSI	GKGCMC	2 cut(s)	82, 269
BseXI	GCAGC	1 cut(s)	79
BshFI	GGCC	2 cut(s)	195, 211
BsiHKAI	GWGCWC	1 cut(s)	82
BsnI	GGCC	2 cut(s)	195, 211
Bsp1286I	GDGCHC	2 cut(s)	82, 269
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	2 cut(s)	195, 211
BspCNI	CTCAG	1 cut(s)	170
BspQI	GCTCTTC	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	176
BssSI	CACGAG	1 cut(s)	170
Bst2BI	CACGAG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	40
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	2 cut(s)	100, 157
BstEII	GGTNACC	1 cut(s)	181
BstF5I	GGATG	3 cut(s)	10, 63, 234
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	5 cut(s)	144, 153, 213, 251, 273
BstPI	GGTNACC	1 cut(s)	181
BstSLI	GKGCMC	2 cut(s)	82, 269
BstV1I	GCAGC	1 cut(s)	79
BsuRI	GGCC	2 cut(s)	195, 211
BtsCI	GGATG	3 cut(s)	10, 63, 234
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	209
CfoI	GCGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	6 cut(s)	113, 138, 175, 195, 211, 229
CviKI_1	RGCY	6 cut(s)	113, 138, 175, 195, 211, 229
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	2 cut(s)	100, 157
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco91I	GGTNACC	1 cut(s)	181
EcoO65I	GGTNACC	1 cut(s)	181
FaeI	CATG	1 cut(s)	86
FaiI	YATR	1 cut(s)	84
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FatI	CATG	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	68, 136
FokI	GGATG	3 cut(s)	17, 70, 221
Fsp4HI	GCNGC	2 cut(s)	68, 136
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	2 cut(s)	68, 136
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	195, 211
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HinfI	GANTC	1 cut(s)	34
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	3 cut(s)	18, 160, 259
Hpy188III	TCNNGA	1 cut(s)	238
Hpy8I	GTNNAC	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4V	TGCA	9 cut(s)	67, 80, 107, 147, 167, 216, 254, 276, 316
HpyF10VI	GCNNNNNNNGC	5 cut(s)	144, 153, 213, 251, 273
HpyF3I	CTNAG	2 cut(s)	100, 157
Hsp92II	CATG	1 cut(s)	86
HspAI	GCGC	1 cut(s)	243
LguI	GCTCTTC	1 cut(s)	40
LpnPI	CCDG	5 cut(s)	10, 189, 193, 251, 282
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	2 cut(s)	225, 263
MaeIII	GTNAC	1 cut(s)	181
MboII	GAAGA	2 cut(s)	43, 57
MhlI	GDGCHC	2 cut(s)	82, 269
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	2 cut(s)	39, 124
MluNI	TGGCCA	1 cut(s)	195
MnlI	CCTC	1 cut(s)	197
Mox20I	TGGCCA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	85
Msp20I	TGGCCA	1 cut(s)	195
MwoI	GCNNNNNNNGC	5 cut(s)	144, 153, 213, 251, 273
NlaIII	CATG	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	2 cut(s)	69, 137
PspEI	GGTNACC	1 cut(s)	181
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	85
SapI	GCTCTTC	1 cut(s)	40
SatI	GCNGC	2 cut(s)	68, 136
SduI	GDGCHC	2 cut(s)	82, 269
SetI	ASST	3 cut(s)	29, 106, 115
SfaNI	GCATC	2 cut(s)	225, 263
SmiMI	CAYNNNNRTG	1 cut(s)	85
Sse9I	AATT	2 cut(s)	39, 124
SsiI	CCGC	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	77
TasI	AATT	2 cut(s)	39, 124
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	34
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	99
TspRI	CASTG	1 cut(s)	183
VneI	GTGCAC	1 cut(s)	78
XapI	RAATTY	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.