RchiOBHm_Chr1g0368001

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0015032
Physical Location & Seq
Reverse (-)
58246960 .. 58249179
2220 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1296 bp
ATGCCACTTCTTCTTCTTCTTCATCTTCTCCTTCATTTTTTCACTTACTACAGTCTCTGCTTCTCTTCTCCACTACCTAAAACCCTCATTCTACCTCTCAAAACCCAGACGCTCCCACATGGGTCGATCCCAAAACCCTCAAACAAGCTCTCATTCCACCACAACGTCACCCTAACCATCTCCCTCACAGTCGGGTCGCCCCCACAGAACGTTACCATGGTCCTCGACACAGGCAGTGAACTCTCCTGGCTCCACTGTAAGAAAACCCCGACCCTCACCAACGTCTTCAATCCACTCGCCTCCAAATCCTACATCCCCGTCTCCTGCTCCACCCCCACTTGCCGCACCCGGACCCGGGACCTATCCATACCCGTTTCCTGCGACCCGAAAAAGCTCTGCCACGCCATTCTCTCCTACGCCGACGCATCCTCCCTGGAAGGCAACCTCGCCTCCGACACTTTCCAACTCGGGTCTTCGGGTCAACCTGGGACCGTATTCGGGTGCATGGACTCCGGGTTCAGCTCCAACTCCGAAGAGGACGCCAAGACAACCGGGTTAATGGGCATGAACCGGGGATCCTTATCCTTCGTAACCCAAATGGGCTTCCCGAGATTCTCGTACTGCATATCGGGCCGTGACTCCTCCGGGGTCTTGCTCTTCGGCGACGCCAACTTCGCTTGGCTCGGCCCTTTAAACTACACGCCGTTAGTCCAAATGTCGACGCCGTTACCGTACTTCGACCGGGTCGCGTACACGGTCCAGCTCGACGGGATCCGGGTCGCCGGGAAAGTACTCCCCCTCCCGAAATCCGCGTTCGTACCCGACCACACCGGGGCGGGTCAGACAATGGTGGACTCGGGCACCCAGTTCACGTTTCTTCTCGGGCCCGTTTACACCGCTTTGAAAAACGAGTTCGTTCTCCAGACCAAACCGGTTCTGAAGCTCCTGGACGACCCGAACTTCGTTTTCCAAGGCGCGATGGATTTGTGTTTTCTGGTTCCGGTGAACCGGCCTGGTCTGCCGGTTCTGCCAGCTGTGACGATGATGTTTAAGGGAGCAGAGATGAGCGTAACGGGGGAAAGGCTGCTGTATCGGGTACCGGGAATGGTGAGGGGGAATAATCAGGTGTATTGCTTCACGTTCGGGAACTCCGACTTGCTGGGCGTAGAGGCGTTTGTGATTGGTCACTATCACCAGCAGAACGTGTGGATGGAGTTTGATCTGGTGAAGTCTAGGATGGGAGTGGCCGAGGTTAGGTGTGATCTCGCAAGTCAAAGGCTAGGTTTGGGTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

431

Amino Acids

47.04

Weight (kDa)

8.24

Isoelectric Point (pI)

30.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 60 - 222 2.4e-36 Xylanase inhibitor N-terminal
Asp PF00026 61 - 418 3.9e-14 Eukaryotic aspartyl protease
TAXi_C PF14541 250 - 414 8.4e-31 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39710
fragaria_vesca FvH4_7g22840
malus_domestica MD01G1136600.v1.1 MD07G1201600.v1.1
prunus_persica Prupe.2G238200_v2.0.a1
pyrus_communis pycom01g15730 pycom07g18860
rosa_chinensis RchiOBHm_Chr1g0368001
rosa_laevigata RLG00000027248
rosa_roxburghii Rroxscaffold_4G00288960
rosa_rugosa Rorug01G0338400
rosa_samantha Rh1AG345100 Rh1BG307400 Rh1CG323000 Rh1DG339500
rosa_wichuraiana Rw1G030710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 1096, 1289
AccB1I GGYRCC 3 cut(s) 860, 1096, 1289
AccI GTMKAC 1 cut(s) 719
AccII CGCG 3 cut(s) 749, 812, 977
AciI CCGC 4 cut(s) 343, 810, 836, 897
AclI AACGTT 1 cut(s) 210
AclWI GGATC 5 cut(s) 121, 570, 583, 766, 779
AcoI YGGCCR 1 cut(s) 1245
AcuI CTGAAG 1 cut(s) 959
AcyI GRCGYC 3 cut(s) 540, 666, 722
AfaI GTAC 7 cut(s) 620, 734, 752, 792, 819, 1098, 1291
AfiI CCNNNNNNNGG 5 cut(s) 354, 355, 498, 832, 1254
AflIII ACRYGT 1 cut(s) 1203
AgeI ACCGGT 1 cut(s) 931
AgsI TTSAA 2 cut(s) 289, 904
AjnI CCWGG 5 cut(s) 245, 432, 484, 945, 1012
AloI GAACNNNNNNTCC 4 cut(s) 500, 532, 560, 592
AluBI AGCT 6 cut(s) 148, 394, 522, 763, 943, 1034
AluI AGCT 6 cut(s) 148, 394, 522, 763, 943, 1034
Alw26I GTCTC 2 cut(s) 59, 325
AlwI GGATC 5 cut(s) 121, 570, 583, 766, 779
AlwNI CAGNNNCTG 1 cut(s) 57
Ama87I CYCGRG 5 cut(s) 354, 467, 607, 856, 881
AoxI GGCC 5 cut(s) 631, 685, 884, 1010, 1245
ApaI GGGCCC 1 cut(s) 888
ApeKI GCWGC 1 cut(s) 1084
ArsI GACNNNNNNTTYG 4 cut(s) 656, 688, 944, 976
AsiGI ACCGGT 1 cut(s) 931
Asp718I GGTACC 2 cut(s) 1096, 1289
AspLEI GCGC 1 cut(s) 977
AspS9I GGNCC 9 cut(s) 220, 351, 358, 489, 631, 686, 757, 884, 885
AsuHPI GGTGA 6 cut(s) 160, 268, 1015, 1120, 1184, 1237
AvaI CYCGRG 5 cut(s) 354, 467, 607, 856, 881
AvaII GGWCC 5 cut(s) 220, 351, 358, 489, 757
BaeGI GKGCMC 2 cut(s) 863, 888
BamHI GGATCC 2 cut(s) 575, 771
BanI GGYRCC 3 cut(s) 860, 1096, 1289
BanII GRGCYC 1 cut(s) 888
BbsI GAAGAC 2 cut(s) 277, 465
BbvI GCAGC 1 cut(s) 1071
BccI CCATC 4 cut(s) 185, 973, 1204, 1231
BceAI ACGGC 3 cut(s) 618, 688, 709
BciT130I CCWGG 5 cut(s) 247, 434, 486, 947, 1014
BcoDI GTCTC 2 cut(s) 59, 325
BfaI CTAG 3 cut(s) 1233, 1280, 1294
BfmI CTRYAG 1 cut(s) 49
BisI GCNGC 2 cut(s) 343, 1085
BlsI GCNGC 2 cut(s) 344, 1086
BmcAI AGTACT 1 cut(s) 792
Bme18I GGWCC 5 cut(s) 220, 351, 358, 489, 757
BmeT110I CYCGRG 5 cut(s) 354, 467, 607, 856, 881
BmgT120I GGNCC 9 cut(s) 220, 351, 358, 489, 631, 686, 757, 884, 885
BmrI ACTGGG 1 cut(s) 859
BmsI GCATC 1 cut(s) 434
BmuI ACTGGG 1 cut(s) 859
BpiI GAAGAC 2 cut(s) 277, 465
BpmI CTGGAG 1 cut(s) 905
BsaBI GATNNNNATC 1 cut(s) 580
BsaHI GRCGYC 3 cut(s) 540, 666, 722
BsaJI CCNNGG 9 cut(s) 216, 354, 432, 485, 571, 645, 831, 970, 1248
BsaWI WCCGGW 2 cut(s) 931, 1000
BsaXI ACNNNNNCTCC 6 cut(s) 413, 434, 443, 464, 783, 813
Bsc4I CCNNNNNNNGG 5 cut(s) 354, 355, 498, 832, 1254
Bse118I RCCGGY 3 cut(s) 931, 1008, 1021
Bse1I ACTGG 1 cut(s) 865
Bse8I GATNNNNATC 1 cut(s) 580
BseBI CCWGG 5 cut(s) 247, 434, 486, 947, 1014
BseDI CCNNGG 9 cut(s) 216, 354, 432, 485, 571, 645, 831, 970, 1248
BseGI GGATG 4 cut(s) 312, 425, 1215, 1242
BseJI GATNNNNATC 1 cut(s) 580
BseLI CCNNNNNNNGG 5 cut(s) 354, 355, 498, 832, 1254
BseNI ACTGG 1 cut(s) 865
BseRI GAGGAG 1 cut(s) 631
BseSI GKGCMC 2 cut(s) 863, 888
BseXI GCAGC 1 cut(s) 1071
BseYI CCCAGC 1 cut(s) 1159
Bsh1236I CGCG 3 cut(s) 749, 812, 977
Bsh1285I CGRYCG 1 cut(s) 742
BshFI GGCC 5 cut(s) 633, 687, 886, 1012, 1247
BshNI GGYRCC 3 cut(s) 860, 1096, 1289
BshTI ACCGGT 1 cut(s) 931
BsiEI CGRYCG 1 cut(s) 742
BsiHKCI CYCGRG 5 cut(s) 354, 467, 607, 856, 881
BslFI GGGAC 2 cut(s) 371, 502
BslI CCNNNNNNNGG 5 cut(s) 354, 355, 498, 832, 1254
BsmAI GTCTC 2 cut(s) 59, 325
BsmBI CGTCTC 1 cut(s) 325
BsmFI GGGAC 2 cut(s) 371, 502
BsnI GGCC 5 cut(s) 633, 687, 886, 1012, 1247
BsoBI CYCGRG 5 cut(s) 354, 467, 607, 856, 881
Bsp120I GGGCCC 1 cut(s) 884
Bsp1286I GDGCHC 2 cut(s) 863, 888
Bsp143I GATC 5 cut(s) 126, 575, 771, 1219, 1261
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 4 cut(s) 343, 810, 836, 897
BspANI GGCC 5 cut(s) 633, 687, 886, 1012, 1247
BspFNI CGCG 3 cut(s) 749, 812, 977
BspPI GGATC 5 cut(s) 121, 570, 583, 766, 779
BspQI GCTCTTC 1 cut(s) 662
BspT107I GGYRCC 3 cut(s) 860, 1096, 1289
BsrFI RCCGGY 3 cut(s) 931, 1008, 1021
BsrI ACTGG 1 cut(s) 865
BssAI RCCGGY 3 cut(s) 931, 1008, 1021
BssECI CCNNGG 9 cut(s) 216, 354, 432, 485, 571, 645, 831, 970, 1248
BssMI GATC 5 cut(s) 126, 575, 771, 1219, 1261
BssNI GRCGYC 3 cut(s) 540, 666, 722
BssT1I CCWWGG 2 cut(s) 216, 970
Bst2UI CCWGG 5 cut(s) 247, 434, 486, 947, 1014
Bst4CI ACNGT 6 cut(s) 53, 190, 257, 493, 732, 757
Bst6I CTCTTC 3 cut(s) 70, 528, 662
BstACI GRCGYC 3 cut(s) 540, 666, 722
BstC8I GCNNGC 1 cut(s) 1032
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 4 cut(s) 312, 425, 1215, 1242
BstFNI CGCG 3 cut(s) 749, 812, 977
BstHHI GCGC 1 cut(s) 977
BstKTI GATC 5 cut(s) 129, 578, 774, 1222, 1264
BstMAI GTCTC 2 cut(s) 59, 325
BstMBI GATC 5 cut(s) 126, 575, 771, 1219, 1261
BstMCI CGRYCG 1 cut(s) 742
BstMWI GCNNNNNNNGC 4 cut(s) 630, 674, 1018, 1027
BstNI CCWGG 5 cut(s) 247, 434, 486, 947, 1014
BstSFI CTRYAG 1 cut(s) 49
BstSLI GKGCMC 2 cut(s) 863, 888
BstUI CGCG 3 cut(s) 749, 812, 977
BstV1I GCAGC 1 cut(s) 1071
BstV2I GAAGAC 2 cut(s) 277, 465
BstX2I RGATCY 2 cut(s) 575, 771
BstYI RGATCY 2 cut(s) 575, 771
BsuRI GGCC 5 cut(s) 633, 687, 886, 1012, 1247
BtgI CCRYGG 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 992
BtsCI GGATG 4 cut(s) 312, 425, 1215, 1242
BtsI GCAGTG 1 cut(s) 241
BtsIMutI CAGTG 2 cut(s) 241, 253
Cac8I GCNNGC 1 cut(s) 1032
CaiI CAGNNNCTG 1 cut(s) 57
CfoI GCGC 1 cut(s) 977
Cfr10I RCCGGY 3 cut(s) 931, 1008, 1021
Cfr13I GGNCC 9 cut(s) 220, 351, 358, 489, 631, 686, 757, 884, 885
Cfr9I CCCGGG 1 cut(s) 354
CseI GACGC 5 cut(s) 118, 431, 548, 674, 730
Csp6I GTAC 7 cut(s) 619, 733, 751, 791, 818, 1097, 1290
CspAI ACCGGT 1 cut(s) 931
CviAII CATG 4 cut(s) 119, 217, 505, 565
CviQI GTAC 7 cut(s) 619, 733, 751, 791, 818, 1097, 1290
DpnI GATC 5 cut(s) 128, 577, 773, 1221, 1263
DpnII GATC 5 cut(s) 126, 575, 771, 1219, 1261
DraI TTTAAA 1 cut(s) 693
EaeI YGGCCR 1 cut(s) 1245
Eam1104I CTCTTC 3 cut(s) 70, 528, 662
EarI CTCTTC 3 cut(s) 70, 528, 662
Eco130I CCWWGG 2 cut(s) 216, 970
Eco24I GRGCYC 1 cut(s) 888
Eco47I GGWCC 5 cut(s) 220, 351, 358, 489, 757
Eco57I CTGAAG 1 cut(s) 959
Eco88I CYCGRG 5 cut(s) 354, 467, 607, 856, 881
EcoO109I RGGNCCY 1 cut(s) 358
EcoRII CCWGG 5 cut(s) 245, 432, 484, 945, 1012
EcoT14I CCWWGG 2 cut(s) 216, 970
EcoT38I GRGCYC 1 cut(s) 888
ErhI CCWWGG 2 cut(s) 216, 970
Esp3I CGTCTC 1 cut(s) 325
FaeI CATG 4 cut(s) 122, 220, 508, 568
FaiI YATR 6 cut(s) 120, 218, 368, 506, 566, 626
FaqI GGGAC 2 cut(s) 371, 502
FatI CATG 4 cut(s) 118, 216, 504, 564
FauI CCCGC 1 cut(s) 829
FblI GTMKAC 1 cut(s) 719
Fnu4HI GCNGC 2 cut(s) 343, 1085
FokI GGATG 4 cut(s) 299, 412, 1222, 1249
FriOI GRGCYC 1 cut(s) 888
Fsp4HI GCNGC 2 cut(s) 343, 1085
FspBI CTAG 3 cut(s) 1233, 1280, 1294
GlaI GCGC 1 cut(s) 976
GluI GCNGC 2 cut(s) 343, 1085
GsaI CCCAGC 1 cut(s) 1163
GsuI CTGGAG 1 cut(s) 905
HaeIII GGCC 5 cut(s) 633, 687, 886, 1012, 1247
HgaI GACGC 5 cut(s) 118, 431, 548, 674, 730
HhaI GCGC 1 cut(s) 977
Hin1I GRCGYC 3 cut(s) 540, 666, 722
Hin1II CATG 4 cut(s) 122, 220, 508, 568
Hin6I GCGC 1 cut(s) 975
HinP1I GCGC 1 cut(s) 975
HincII GTYRAC 2 cut(s) 482, 720
HindII GTYRAC 2 cut(s) 482, 720
HinfI GANTC 4 cut(s) 509, 612, 638, 854
HphI GGTGA 6 cut(s) 160, 268, 1015, 1120, 1184, 1237
Hpy166II GTNNAC 8 cut(s) 239, 482, 720, 753, 853, 870, 892, 1006
Hpy188I TCNGA 5 cut(s) 454, 532, 843, 939, 1153
Hpy188III TCNNGA 4 cut(s) 607, 802, 922, 1144
Hpy8I GTNNAC 8 cut(s) 239, 482, 720, 753, 853, 870, 892, 1006
Hpy99I CGWCG 4 cut(s) 425, 668, 724, 770
HpyAV CCTTC 3 cut(s) 41, 431, 595
HpyCH4III ACNGT 6 cut(s) 53, 190, 257, 493, 732, 757
HpyCH4IV ACGT 6 cut(s) 165, 210, 282, 872, 1139, 1203
HpyCH4V TGCA 2 cut(s) 504, 624
HpyF10VI GCNNNNNNNGC 4 cut(s) 630, 674, 1018, 1027
HpySE526I ACGT 6 cut(s) 165, 210, 282, 872, 1139, 1203
Hsp92I GRCGYC 3 cut(s) 540, 666, 722
Hsp92II CATG 4 cut(s) 122, 220, 508, 568
HspAI GCGC 1 cut(s) 975
KpnI GGTACC 2 cut(s) 1100, 1293
Kzo9I GATC 5 cut(s) 126, 575, 771, 1219, 1261
LguI GCTCTTC 1 cut(s) 662
LmnI GCTCC 6 cut(s) 117, 255, 332, 527, 948, 1055
Lsp1109I GCAGC 1 cut(s) 1071
LweI GCATC 1 cut(s) 434
MaeI CTAG 3 cut(s) 1233, 1280, 1294
MaeII ACGT 6 cut(s) 165, 210, 282, 872, 1139, 1203
MaeIII GTNAC 8 cut(s) 166, 211, 589, 635, 726, 1036, 1069, 1184
MalI GATC 5 cut(s) 128, 577, 773, 1221, 1263
MboI GATC 5 cut(s) 126, 575, 771, 1219, 1261
MflI RGATCY 2 cut(s) 575, 771
MhlI GDGCHC 2 cut(s) 863, 888
MlyI GAGTC 3 cut(s) 503, 632, 848
MmeI TCCRAC 4 cut(s) 477, 487, 549, 1176
MseI TTAA 3 cut(s) 557, 692, 1050
MspA1I CMGCKG 1 cut(s) 1034
MvaI CCWGG 5 cut(s) 247, 434, 486, 947, 1014
MvnI CGCG 3 cut(s) 749, 812, 977
MwoI GCNNNNNNNGC 4 cut(s) 630, 674, 1018, 1027
NcoI CCATGG 1 cut(s) 216
NdeII GATC 5 cut(s) 126, 575, 771, 1219, 1261
NlaIII CATG 4 cut(s) 122, 220, 508, 568
NmeAIII GCCGAG 2 cut(s) 663, 1273
NmuCI GTSAC 4 cut(s) 166, 635, 1036, 1184
PciSI GCTCTTC 1 cut(s) 662
PcsI WCGNNNNNNNCGW 2 cut(s) 728, 1149
PfeI GAWTC 1 cut(s) 612
PflFI GACNNNGTC 1 cut(s) 743
PfoI TCCNGGA 1 cut(s) 945
PinAI ACCGGT 1 cut(s) 931
PkrI GCNGC 2 cut(s) 344, 1086
PleI GAGTC 3 cut(s) 503, 632, 848
PpsI GAGTC 3 cut(s) 503, 632, 848
PpuMI RGGWCCY 1 cut(s) 358
Psp1406I AACGTT 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 358
Psp6I CCWGG 5 cut(s) 245, 432, 484, 945, 1012
PspFI CCCAGC 1 cut(s) 1159
PspGI CCWGG 5 cut(s) 245, 432, 484, 945, 1012
PspOMI GGGCCC 1 cut(s) 884
PspPI GGNCC 9 cut(s) 220, 351, 358, 489, 631, 686, 757, 884, 885
PspPPI RGGWCCY 1 cut(s) 358
PstNI CAGNNNCTG 1 cut(s) 57
PsuI RGATCY 2 cut(s) 575, 771
PsyI GACNNNGTC 1 cut(s) 743
PvuII CAGCTG 1 cut(s) 1034
RsaI GTAC 7 cut(s) 620, 734, 752, 792, 819, 1098, 1291
RsaNI GTAC 7 cut(s) 619, 733, 751, 791, 818, 1097, 1290
SalI GTCGAC 1 cut(s) 718
SapI GCTCTTC 1 cut(s) 662
SaqAI TTAA 3 cut(s) 557, 692, 1050
SatI GCNGC 2 cut(s) 343, 1085
Sau3AI GATC 5 cut(s) 126, 575, 771, 1219, 1261
Sau96I GGNCC 9 cut(s) 220, 351, 358, 489, 631, 686, 757, 884, 885
ScaI AGTACT 1 cut(s) 792
SchI GAGTC 3 cut(s) 503, 632, 848
SduI GDGCHC 2 cut(s) 863, 888
SfaNI GCATC 1 cut(s) 434
SfcI CTRYAG 1 cut(s) 49
SinI GGWCC 5 cut(s) 220, 351, 358, 489, 757
SmaI CCCGGG 1 cut(s) 356
SsiI CCGC 4 cut(s) 343, 810, 836, 897
SspMI CTAG 3 cut(s) 1233, 1280, 1294
StyI CCWWGG 2 cut(s) 216, 970
TaaI ACNGT 6 cut(s) 53, 190, 257, 493, 732, 757
TaiI ACGT 6 cut(s) 168, 213, 285, 875, 1142, 1206
TaqI TCGA 5 cut(s) 125, 225, 719, 738, 765
TatI WGTACW 1 cut(s) 790
TauI GCSGC 1 cut(s) 345
TfiI GAWTC 1 cut(s) 612
Tru1I TTAA 3 cut(s) 557, 692, 1050
Tru9I TTAA 3 cut(s) 557, 692, 1050
TscAI CASTG 2 cut(s) 241, 260
TseFI GTSAC 4 cut(s) 166, 635, 1036, 1184
TseI GCWGC 1 cut(s) 1084
Tsp45I GTSAC 4 cut(s) 166, 635, 1036, 1184
TspDTI ATGAA 3 cut(s) 11, 23, 581
TspMI CCCGGG 1 cut(s) 354
TspRI CASTG 2 cut(s) 241, 260
Tth111I GACNNNGTC 1 cut(s) 743
VpaK11BI GGWCC 5 cut(s) 220, 351, 358, 489, 757
XmaI CCCGGG 1 cut(s) 354
XmiI GTMKAC 1 cut(s) 719
XspI CTAG 3 cut(s) 1233, 1280, 1294
ZrmI AGTACT 1 cut(s) 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.