RchiOBHm_Chr1g0370671
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0008985
Physical Location & Seq
Forward (+)
60156197 .. 60157824
1628 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1017 bp
ATGAAGATTTTTACCCTCTTAATCAGTAAAAGAGCAAATTTTGAGAATGAAATGAAACAACCATCGACACAATGTAGGACATGTGTATTGGAAGCCAAGCAGTTCCACATGGTTAAACTAGAACAGTTAGTAGTCTGTCCAAACCCGAATAGGAAACCTGACGTCACCGCCGGTCGAATCCACGGCCAGATTTCCATTCCCTTTCCGAGCCCGATCCTTTTCCCCATCTCTCACCCACTCCCCTACAACACCTCTCGCTTCCACTCCAACAGTCCAACTCTCTCTCTCTCTCTCTCAACCCGAACCCGACCCATGGAGCGCCCGACCCGGCCCTACGCCCCGGGCGGCCGCGAGGACTGCTGGAGCGACGACGCCACGTCAGTGCTGATAACGGCGTGGGGCGACCGTTACCTCCGCCTCAACCGCGGCAACCTCCGCCAGAAGGACTGGAAGGAGGTGGCGGACTCCGTCAACTCCCGCCGCGACGGCGCCGTTTTCAAGACCGACGGGCAGTGCAAGAACCGAATCGACACGCTGAAGAAGAAGTACAAGCTCGAAAAGTCCAAGCCCTTCCCCTCCACGTGGATCTTCTACGACAGCCTCGACTCGCTCATCGGAGTCCCCTCCTCAAACGCCGCCGCTTTGACTCGACCCCCGAAGCCACTCACACTCGCCCTGACCCTCAAGTCCGCCGCCGACCCCAGTCCCCTGGGTTTCCGCCGCTGCGGCTCCACGGAGAGCGACGGCGAGGATGACGTGGAGGGGGGAGGAGTAGGGTTGGCGGGTGGGGCGGCGTGTAGGGAACTGGCGAGGGCGATCTTGAAGTTCGGGGAGATTTATGAGAGGATGGAGAGTTCCAAGCAGGAGCAGATGGTTGAACTGGAGAAGCAGAGGATGGCTTTCACTAAGGAACTTGAGGTGCAGAGGTTGAATATGTTTATGGATGCTCAATTGGAGCTGGAGAAGATGAAGAAGCGCCCCAAATACTCAAAGCATTCTTCCGGAAAGAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

338

Amino Acids

38.11

Weight (kDa)

9.55

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 119 - 204 9.7e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 685
AatII GACGTC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 488
AccII CGCG 3 cut(s) 351, 426, 483
AccIII TCCGGA 1 cut(s) 1001
AclWI GGATC 2 cut(s) 208, 593
AcoI YGGCCR 2 cut(s) 184, 346
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 557
AcvI CACGTG 1 cut(s) 582
AcyI GRCGYC 3 cut(s) 162, 372, 489
AfaI GTAC 1 cut(s) 548
AfiI CCNNNNNNNGG 3 cut(s) 313, 442, 582
AflIII ACRYGT 1 cut(s) 80
AgsI TTSAA 4 cut(s) 499, 823, 878, 931
AhdI GACNNNNNGTC 1 cut(s) 376
AjiI CACGTC 2 cut(s) 378, 757
AjnI CCWGG 1 cut(s) 708
AleI CACNNNNGTG 1 cut(s) 380
AloI GAACNNNNNNTCC 2 cut(s) 838, 870
AluBI AGCT 2 cut(s) 553, 958
AluI AGCT 2 cut(s) 553, 958
AlwI GGATC 2 cut(s) 208, 593
Ama87I CYCGRG 1 cut(s) 340
Aor13HI TCCGGA 1 cut(s) 1001
AoxI GGCC 3 cut(s) 184, 329, 346
ApeKI GCWGC 1 cut(s) 723
ApoI RAATTY 1 cut(s) 37
AspLEI GCGC 3 cut(s) 321, 491, 978
AspS9I GGNCC 1 cut(s) 330
AsuC2I CCSGG 3 cut(s) 328, 341, 342
AsuHPI GGTGA 2 cut(s) 157, 224
AvaI CYCGRG 1 cut(s) 340
BanI GGYRCC 1 cut(s) 488
BanII GRGCYC 1 cut(s) 212
BarI GAAGNNNNNNTAC 2 cut(s) 530, 562
BbrPI CACGTG 1 cut(s) 582
BbvI GCAGC 1 cut(s) 710
BccI CCATC 5 cut(s) 70, 233, 841, 865, 889
BceAI ACGGC 5 cut(s) 199, 408, 476, 502, 760
BciT130I CCWGG 1 cut(s) 710
BcnI CCSGG 3 cut(s) 328, 341, 342
BfaI CTAG 1 cut(s) 119
BfoI RGCGCY 3 cut(s) 322, 492, 979
BglI GCCNNNNNGGC 2 cut(s) 486, 726
Bme1390I CCNGG 4 cut(s) 328, 341, 342, 710
BmeRI GACNNNNNGTC 1 cut(s) 376
BmeT110I CYCGRG 1 cut(s) 340
BmgBI CACGTC 2 cut(s) 378, 757
BmgT120I GGNCC 1 cut(s) 330
BmiI GGNNCC 2 cut(s) 490, 730
BmrFI CCNGG 4 cut(s) 328, 341, 342, 710
BmrI ACTGGG 1 cut(s) 696
BmsI GCATC 1 cut(s) 934
BmuI ACTGGG 1 cut(s) 696
BoxI GACNNNNGTC 1 cut(s) 702
BpmI CTGGAG 3 cut(s) 382, 902, 980
BpuEI CTTGAG 2 cut(s) 668, 935
BpuMI CCSGG 3 cut(s) 328, 341, 342
BsaAI YACGTR 1 cut(s) 582
BsaHI GRCGYC 3 cut(s) 162, 372, 489
BsaJI CCNNGG 8 cut(s) 181, 312, 339, 340, 424, 708, 709, 732
BsaWI WCCGGW 1 cut(s) 1001
Bsc4I CCNNNNNNNGG 3 cut(s) 313, 442, 582
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 4 cut(s) 452, 702, 810, 885
BseAI TCCGGA 1 cut(s) 1001
BseBI CCWGG 1 cut(s) 710
BseDI CCNNGG 8 cut(s) 181, 312, 339, 340, 424, 708, 709, 732
BseGI GGATG 4 cut(s) 757, 852, 900, 949
BseLI CCNNNNNNNGG 3 cut(s) 313, 442, 582
BseNI ACTGG 4 cut(s) 452, 702, 810, 885
BseRI GAGGAG 2 cut(s) 616, 783
BseX3I CGGCCG 1 cut(s) 346
BseXI GCAGC 1 cut(s) 710
BsgI GTGCAG 1 cut(s) 941
Bsh1236I CGCG 3 cut(s) 351, 426, 483
Bsh1285I CGRYCG 3 cut(s) 175, 349, 406
BshFI GGCC 3 cut(s) 186, 331, 348
BshNI GGYRCC 1 cut(s) 488
BsiEI CGRYCG 3 cut(s) 175, 349, 406
BsiHKCI CYCGRG 1 cut(s) 340
BsiSI CCGG 4 cut(s) 171, 328, 341, 1002
BslFI GGGAC 2 cut(s) 605, 690
BslI CCNNNNNNNGG 3 cut(s) 313, 442, 582
BsmFI GGGAC 2 cut(s) 605, 690
BsmI GAATGC 1 cut(s) 994
BsnI GGCC 3 cut(s) 186, 331, 348
BsoBI CYCGRG 1 cut(s) 340
Bsp1286I GDGCHC 1 cut(s) 212
Bsp13I TCCGGA 1 cut(s) 1001
Bsp143I GATC 3 cut(s) 213, 585, 816
Bsp19I CCATGG 1 cut(s) 312
BspANI GGCC 3 cut(s) 186, 331, 348
BspEI TCCGGA 1 cut(s) 1001
BspFNI CGCG 3 cut(s) 351, 426, 483
BspLI GGNNCC 2 cut(s) 490, 730
BspPI GGATC 2 cut(s) 208, 593
BspT107I GGYRCC 1 cut(s) 488
BsrFI RCCGGY 1 cut(s) 170
BsrI ACTGG 4 cut(s) 452, 702, 810, 885
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 8 cut(s) 181, 312, 339, 340, 424, 708, 709, 732
BssMI GATC 3 cut(s) 213, 585, 816
BssNI GRCGYC 3 cut(s) 162, 372, 489
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 710
Bst4CI ACNGT 3 cut(s) 126, 272, 407
BstACI GRCGYC 3 cut(s) 162, 372, 489
BstBAI YACGTR 1 cut(s) 582
BstDEI CTNAG 1 cut(s) 906
BstDSI CCRYGG 4 cut(s) 181, 312, 424, 732
BstF5I GGATG 4 cut(s) 757, 852, 900, 949
BstFNI CGCG 3 cut(s) 351, 426, 483
BstH2I RGCGCY 3 cut(s) 322, 492, 979
BstHHI GCGC 3 cut(s) 321, 491, 978
BstKTI GATC 3 cut(s) 216, 588, 819
BstMBI GATC 3 cut(s) 213, 585, 816
BstMCI CGRYCG 3 cut(s) 175, 349, 406
BstMWI GCNNNNNNNGC 6 cut(s) 357, 423, 435, 486, 726, 788
BstNI CCWGG 1 cut(s) 710
BstNSI RCATGY 1 cut(s) 84
BstPAI GACNNNNGTC 1 cut(s) 702
BstSCI CCNGG 4 cut(s) 326, 339, 340, 708
BstUI CGCG 3 cut(s) 351, 426, 483
BstV1I GCAGC 1 cut(s) 710
BstX2I RGATCY 1 cut(s) 585
BstXI CCANNNNNNTGG 1 cut(s) 709
BstYI RGATCY 1 cut(s) 585
BstZI CGGCCG 1 cut(s) 346
BsuRI GGCC 3 cut(s) 186, 331, 348
BtgI CCRYGG 4 cut(s) 181, 312, 424, 732
BtrI CACGTC 2 cut(s) 378, 757
BtsCI GGATG 4 cut(s) 757, 852, 900, 949
BtsI GCAGTG 1 cut(s) 518
BtsIMutI CAGTG 2 cut(s) 387, 518
CciNI GCGGCCGC 1 cut(s) 346
CfoI GCGC 3 cut(s) 321, 491, 978
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 330
Cfr42I CCGCGG 1 cut(s) 427
Cfr9I CCCGGG 1 cut(s) 340
CseI GACGC 1 cut(s) 380
Csp6I GTAC 1 cut(s) 547
CviAII CATG 3 cut(s) 81, 109, 313
CviQI GTAC 1 cut(s) 547
DdeI CTNAG 1 cut(s) 906
DinI GGCGCC 1 cut(s) 490
DpnI GATC 3 cut(s) 215, 587, 818
DpnII GATC 3 cut(s) 213, 585, 816
DrdI GACNNNNNNGTC 1 cut(s) 685
DriI GACNNNNNGTC 1 cut(s) 376
DseDI GACNNNNNNGTC 1 cut(s) 685
EaeI YGGCCR 2 cut(s) 184, 346
EagI CGGCCG 1 cut(s) 346
Eam1105I GACNNNNNGTC 1 cut(s) 376
EciI GGCGGA 5 cut(s) 404, 425, 476, 679, 707
EclXI CGGCCG 1 cut(s) 346
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 212
Eco52I CGGCCG 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 557
Eco72I CACGTG 1 cut(s) 582
Eco88I CYCGRG 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 708
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 212
EgeI GGCGCC 1 cut(s) 490
EheI GGCGCC 1 cut(s) 490
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 3 cut(s) 84, 112, 316
FaiI YATR 6 cut(s) 82, 110, 314, 840, 935, 941
FaqI GGGAC 2 cut(s) 605, 690
FatI CATG 3 cut(s) 80, 108, 312
FauI CCCGC 2 cut(s) 485, 775
FokI GGATG 4 cut(s) 764, 859, 907, 956
FriOI GRGCYC 1 cut(s) 212
FspBI CTAG 1 cut(s) 119
GlaI GCGC 3 cut(s) 320, 490, 977
GsuI CTGGAG 3 cut(s) 382, 902, 980
HaeII RGCGCY 3 cut(s) 322, 492, 979
HaeIII GGCC 3 cut(s) 186, 331, 348
HapII CCGG 4 cut(s) 171, 328, 341, 1002
HgaI GACGC 1 cut(s) 380
HhaI GCGC 3 cut(s) 321, 491, 978
Hin1I GRCGYC 3 cut(s) 162, 372, 489
Hin1II CATG 3 cut(s) 84, 112, 316
Hin6I GCGC 3 cut(s) 319, 489, 976
HinP1I GCGC 3 cut(s) 319, 489, 976
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HinfI GANTC 6 cut(s) 177, 464, 525, 605, 618, 646
HpaII CCGG 4 cut(s) 171, 328, 341, 1002
HphI GGTGA 2 cut(s) 157, 224
Hpy166II GTNNAC 1 cut(s) 472
Hpy188I TCNGA 2 cut(s) 207, 617
Hpy188III TCNNGA 3 cut(s) 499, 820, 1002
Hpy8I GTNNAC 1 cut(s) 472
Hpy99I CGWCG 5 cut(s) 371, 374, 488, 509, 746
HpyAV CCTTC 3 cut(s) 436, 445, 580
HpyCH4III ACNGT 3 cut(s) 126, 272, 407
HpyCH4IV ACGT 4 cut(s) 162, 377, 581, 756
HpyCH4V TGCA 2 cut(s) 516, 922
HpyF10VI GCNNNNNNNGC 6 cut(s) 357, 423, 435, 486, 726, 788
HpyF3I CTNAG 1 cut(s) 906
HpySE526I ACGT 4 cut(s) 162, 377, 581, 756
Hsp92I GRCGYC 3 cut(s) 162, 372, 489
Hsp92II CATG 3 cut(s) 84, 112, 316
HspAI GCGC 3 cut(s) 319, 489, 976
KasI GGCGCC 1 cut(s) 488
Kpn2I TCCGGA 1 cut(s) 1001
KspI CCGCGG 1 cut(s) 427
Kzo9I GATC 3 cut(s) 213, 585, 816
LmnI GCTCC 5 cut(s) 316, 363, 734, 865, 955
Lsp1109I GCAGC 1 cut(s) 710
LweI GCATC 1 cut(s) 934
MaeI CTAG 1 cut(s) 119
MaeII ACGT 4 cut(s) 162, 377, 581, 756
MaeIII GTNAC 2 cut(s) 163, 407
MalI GATC 3 cut(s) 215, 587, 818
MboI GATC 3 cut(s) 213, 585, 816
MboII GAAGA 7 cut(s) 16, 550, 553, 580, 976, 982, 990
MfeI CAATTG 1 cut(s) 950
MflI RGATCY 1 cut(s) 585
MhlI GDGCHC 1 cut(s) 212
MluCI AATT 2 cut(s) 37, 950
Mly113I GGCGCC 1 cut(s) 489
MlyI GAGTC 4 cut(s) 458, 599, 627, 640
MmeI TCCRAC 2 cut(s) 291, 299
MroI TCCGGA 1 cut(s) 1001
MseI TTAA 2 cut(s) 20, 114
MslI CAYNNNNRTG 1 cut(s) 380
MspA1I CMGCKG 2 cut(s) 426, 723
MspI CCGG 4 cut(s) 171, 328, 341, 1002
MspR9I CCNGG 4 cut(s) 328, 341, 342, 710
MunI CAATTG 1 cut(s) 950
Mva1269I GAATGC 1 cut(s) 994
MvaI CCWGG 1 cut(s) 710
MvnI CGCG 3 cut(s) 351, 426, 483
MwoI GCNNNNNNNGC 6 cut(s) 357, 423, 435, 486, 726, 788
NarI GGCGCC 1 cut(s) 489
NciI CCSGG 3 cut(s) 328, 341, 342
NcoI CCATGG 1 cut(s) 312
NdeII GATC 3 cut(s) 213, 585, 816
NlaIII CATG 3 cut(s) 84, 112, 316
NlaIV GGNNCC 2 cut(s) 490, 730
NmuCI GTSAC 1 cut(s) 163
NotI GCGGCCGC 1 cut(s) 346
NspI RCATGY 1 cut(s) 84
OliI CACNNNNGTG 1 cut(s) 380
PasI CCCWGGG 1 cut(s) 709
PciI ACATGT 1 cut(s) 80
PcsI WCGNNNNNNNCGW 1 cut(s) 600
PctI GAATGC 1 cut(s) 994
PfeI GAWTC 2 cut(s) 177, 525
PflFI GACNNNGTC 1 cut(s) 467
PleI GAGTC 4 cut(s) 458, 599, 626, 640
PluTI GGCGCC 1 cut(s) 492
PmaCI CACGTG 1 cut(s) 582
PmlI CACGTG 1 cut(s) 582
PpsI GAGTC 4 cut(s) 458, 599, 626, 640
Ppu21I YACGTR 1 cut(s) 582
PscI ACATGT 1 cut(s) 80
PshAI GACNNNNGTC 1 cut(s) 702
Psp6I CCWGG 1 cut(s) 708
PspCI CACGTG 1 cut(s) 582
PspGI CCWGG 1 cut(s) 708
PspN4I GGNNCC 2 cut(s) 490, 730
PspPI GGNCC 1 cut(s) 330
PsuI RGATCY 1 cut(s) 585
PsyI GACNNNGTC 1 cut(s) 467
RsaI GTAC 1 cut(s) 548
RsaNI GTAC 1 cut(s) 547
RseI CAYNNNNRTG 1 cut(s) 380
SacII CCGCGG 1 cut(s) 427
SaqAI TTAA 2 cut(s) 20, 114
Sau3AI GATC 3 cut(s) 213, 585, 816
Sau96I GGNCC 1 cut(s) 330
SchI GAGTC 4 cut(s) 458, 599, 627, 640
ScrFI CCNGG 4 cut(s) 328, 341, 342, 710
SduI GDGCHC 1 cut(s) 212
SfaNI GCATC 1 cut(s) 934
SfoI GGCGCC 1 cut(s) 490
Sfr303I CCGCGG 1 cut(s) 427
SgrBI CCGCGG 1 cut(s) 427
SmaI CCCGGG 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 2 cut(s) 683, 914
SmoI CTYRAG 2 cut(s) 683, 914
Sse9I AATT 2 cut(s) 37, 950
SspDI GGCGCC 1 cut(s) 488
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 4 cut(s) 326, 339, 340, 708
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 3 cut(s) 126, 272, 407
TaiI ACGT 4 cut(s) 165, 380, 584, 759
TaqI TCGA 6 cut(s) 65, 175, 528, 555, 603, 649
TaqII GACCGA 1 cut(s) 518
TasI AATT 2 cut(s) 37, 950
TatI WGTACW 1 cut(s) 546
TfiI GAWTC 2 cut(s) 177, 525
Tru1I TTAA 2 cut(s) 20, 114
Tru9I TTAA 2 cut(s) 20, 114
TscAI CASTG 2 cut(s) 387, 518
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 1 cut(s) 723
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 4 cut(s) 17, 63, 68, 983
TspGWI ACGGA 2 cut(s) 457, 749
TspMI CCCGGG 1 cut(s) 340
TspRI CASTG 2 cut(s) 387, 518
Tth111I GACNNNGTC 1 cut(s) 467
XapI RAATTY 1 cut(s) 37
XceI RCATGY 1 cut(s) 84
XmaI CCCGGG 1 cut(s) 340
XspI CTAG 1 cut(s) 119
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.