RchiOBHm_Chr1g0376321

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0014242
Physical Location & Seq
Reverse (-)
63553529 .. 63555870
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1350 bp
ATGGCTGCATTTGCACCAAAAACCATCGTATTCTGCACATTTTTCCTTCTTTTAACTACGCTTCCACGATCAAGAGCAGCACTCGATGTTCACTATTATGATAAAACATGTCCACAAGTCGAGAAAATCATATTTCAGACGGTATACAATGCTTCCATGCATGACCCTAAAGTCCCAGCTCGTATCTTAAGGATGTTCTTCCACGATTGCTTTATAAGGGGTTGTGATGCGTCCTTGCTGCTCGACTCAACACCAGGGAACCAAGCAGAGAAAGATGGCCCTCCCAATATTTCAGTCCGATCATTCTACGTGATCAAGGAGGCCAAAGCTAAGCTAGAAGCCGCATGTCCACGCACAGTTTCATGCGCCGATATAATAGGCATTGCTGCAAGAGATGTAGTAACCATGTCTCGAGGCCCATATTGGAATGTGCTTAAAGGAAGAAAAGATGGAAGGGTGTCGAGGGCTAACGAGACCATCAACCTACCGGCTCCAACCTTCAATGTAAGCCAACTGATTCAAAGCTTTGCCAAGAGAGGTTTAGGAGTCAAAGAATTGGTAGCTCTATCCGGTGGCCATACTCTAGGGTTTTCGCATTGTTCTTCCTTCCAAGCCCGTCTTCGCAATTTTAGTTCAGTCCACGATGTCGACCCGACTATGGACAGTGAGTTTGCTCTAAAGCTAAGAAAGCAATGCCCTAAACCAAACAGAGATCACGGCGCTGGGGAGTTGTTGGACTCGACATCCTCGATTTTTGATAATGATTATTACAAGAGATTGATAGGAGGAAAGGGAGTGTTTGGATCGGACCAAGCATTGTTTGGTGATTACAGGACTAAATGGATTGTTGAATCGTATGCCAAAGATCAAAGTTTGTTCTTTAAAGAGTTTGCAGCTTCTATGGTGAAACTAGGTAATGTTGGGGTGATTGAGGATGGAGAAGTGAGACTGAATTGCAGAGTGTTAACTTCTTACTTTTCATTGCATCCGACAAACGTCAATGGCTCACGGTACTACAATAGCCAAAAAATTTACGATCATTCTGAGATCATATCTCCGAGGGACTCGGTGGGACATGACACTCACACAGCCTCCATTGCAGCAGGAAGAGAAATTGCAGGAGCAAACATCTATGGATTGCCTGAAGGAGTTGCAAGGGGCGGAGTCCCCCATTCCAGGATGGCTGTATACAAAGTTTGCTGGGCAATGGGATGTAGTCTTGCGGATCTCCTAGCTGCCTTTGATATGCAATTGCTGAGAGAGTTGATATCATATCTGTTTCATTCGGAATGTCATCATCTTTCAGCTAAACGGAGGATCCAGTGGCAATTGGAGCTTTTCAGGCATTAA

Protein Analysis

449

Amino Acids

50.07

Weight (kDa)

8.96

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 47 - 289 6.5e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014242)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51890
fragaria_vesca FvH4_7g28760
malus_domestica MD00G1004800.v1.1 MD01G1193700.v1.1 MD01G1194000.v1.1
prunus_persica Prupe.2G287900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0376321
rosa_laevigata RLG00000026612
rosa_multiflora Rmu_co8151018.1_g000001 Rmu_sc0016074.1_g000002
rosa_roxburghii Rroxscaffold_4G00282210
rosa_rugosa Rorug01G0395600
rosa_samantha Rh1AG406600 Rh1BG370600 Rh1CG383400 Rh1DG400400
rosa_wichuraiana Rw1G036090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 215
AasI GACNNNNNNGTC 1 cut(s) 170
AccI GTMKAC 3 cut(s) 144, 648, 1188
AciI CCGC 3 cut(s) 342, 1161, 1223
AclWI GGATC 4 cut(s) 811, 1233, 1312, 1325
AcoI YGGCCR 1 cut(s) 574
AcsI RAATTY 1 cut(s) 1029
AcuI CTGAAG 1 cut(s) 1164
AfaI GTAC 1 cut(s) 1013
AfiI CCNNNNNNNGG 2 cut(s) 658, 1176
AflII CTTAAG 1 cut(s) 187
AflIII ACRYGT 1 cut(s) 107
AgsI TTSAA 3 cut(s) 502, 521, 851
AjnI CCWGG 2 cut(s) 253, 1175
AjuI GAANNNNNNNTTGG 2 cut(s) 603, 635
Alw26I GTCTC 3 cut(s) 414, 467, 940
AlwI GGATC 4 cut(s) 811, 1233, 1312, 1325
Ama87I CYCGRG 1 cut(s) 411
AoxI GGCC 4 cut(s) 277, 321, 415, 574
ApeKI GCWGC 7 cut(s) 5, 77, 238, 386, 893, 1100, 1235
ApoI RAATTY 1 cut(s) 1029
ArsI GACNNNNNNTTYG 2 cut(s) 653, 685
AspLEI GCGC 2 cut(s) 368, 722
AspS9I GGNCC 3 cut(s) 278, 416, 808
AsuHPI GGTGA 3 cut(s) 836, 916, 937
AvaI CYCGRG 1 cut(s) 411
AvaII GGWCC 1 cut(s) 808
BalI TGGCCA 1 cut(s) 576
BamHI GGATCC 1 cut(s) 1317
BbsI GAAGAC 1 cut(s) 611
BbvI GCAGC 6 cut(s) 89, 225, 373, 905, 1112, 1222
BccI CCATC 6 cut(s) 32, 269, 443, 485, 929, 1174
BceAI ACGGC 1 cut(s) 733
BciT130I CCWGG 2 cut(s) 255, 1177
BclI TGATCA 1 cut(s) 312
BcoDI GTCTC 3 cut(s) 414, 467, 940
BfaI CTAG 4 cut(s) 335, 584, 911, 1232
BfoI RGCGCY 1 cut(s) 723
BfrI CTTAAG 1 cut(s) 187
BisI GCNGC 8 cut(s) 6, 78, 239, 342, 387, 894, 1101, 1236
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 8 cut(s) 7, 79, 240, 343, 388, 895, 1102, 1237
Bme1390I CCNGG 2 cut(s) 255, 1177
Bme18I GGWCC 1 cut(s) 808
BmeT110I CYCGRG 1 cut(s) 411
BmgT120I GGNCC 3 cut(s) 278, 416, 808
BmiI GGNNCC 3 cut(s) 260, 492, 1319
BmrFI CCNGG 2 cut(s) 255, 1177
BmsI GCATC 2 cut(s) 217, 994
BoxI GACNNNNGTC 1 cut(s) 995
BpiI GAAGAC 1 cut(s) 611
BplI GAGNNNNNCTC 2 cut(s) 66, 98
Bpu1102I GCTNAGC 1 cut(s) 330
BsaAI YACGTR 1 cut(s) 310
BsaI GGTCTC 1 cut(s) 467
BsaJI CCNNGG 2 cut(s) 254, 1058
BsaWI WCCGGW 1 cut(s) 569
BsaXI ACNNNNNCTCC 2 cut(s) 1076, 1106
Bsc4I CCNNNNNNNGG 2 cut(s) 658, 1176
Bse118I RCCGGY 1 cut(s) 487
Bse1I ACTGG 1 cut(s) 1321
Bse3DI GCAATG 5 cut(s) 381, 698, 980, 1095, 1212
BseBI CCWGG 2 cut(s) 255, 1177
BseDI CCNNGG 2 cut(s) 254, 1058
BseGI GGATG 6 cut(s) 198, 743, 940, 985, 1185, 1217
BseLI CCNNNNNNNGG 2 cut(s) 658, 1176
BseMI GCAATG 5 cut(s) 381, 698, 980, 1095, 1212
BseMII CTCAG 2 cut(s) 1035, 1247
BseNI ACTGG 1 cut(s) 1321
BseXI GCAGC 6 cut(s) 89, 225, 373, 905, 1112, 1222
BseYI CCCAGC 3 cut(s) 175, 722, 1200
BsgI GTGCAG 1 cut(s) 19
BshFI GGCC 4 cut(s) 279, 323, 417, 576
BsiHKCI CYCGRG 1 cut(s) 411
BsiSI CCGG 2 cut(s) 488, 570
BslFI GGGAC 4 cut(s) 158, 1076, 1086, 1151
BslI CCNNNNNNNGG 2 cut(s) 658, 1176
BsmAI GTCTC 3 cut(s) 414, 467, 940
BsmFI GGGAC 4 cut(s) 158, 1076, 1086, 1151
BsnI GGCC 4 cut(s) 279, 323, 417, 576
Bso31I GGTCTC 1 cut(s) 467
BsoBI CYCGRG 1 cut(s) 411
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 3 cut(s) 342, 1161, 1223
BspANI GGCC 4 cut(s) 279, 323, 417, 576
BspCNI CTCAG 2 cut(s) 1036, 1248
BspLI GGNNCC 3 cut(s) 260, 492, 1319
BspPI GGATC 4 cut(s) 811, 1233, 1312, 1325
BspTI CTTAAG 1 cut(s) 187
BspTNI GGTCTC 1 cut(s) 467
BsrDI GCAATG 5 cut(s) 381, 698, 980, 1095, 1212
BsrFI RCCGGY 1 cut(s) 487
BsrI ACTGG 1 cut(s) 1321
BssAI RCCGGY 1 cut(s) 487
BssECI CCNNGG 2 cut(s) 254, 1058
BssNAI GTATAC 2 cut(s) 145, 1189
Bst1107I GTATAC 2 cut(s) 145, 1189
Bst2UI CCWGG 2 cut(s) 255, 1177
Bst4CI ACNGT 4 cut(s) 142, 358, 665, 1011
Bst6I CTCTTC 1 cut(s) 1102
BstAFI CTTAAG 1 cut(s) 187
BstBAI YACGTR 1 cut(s) 310
BstDEI CTNAG 4 cut(s) 330, 683, 1044, 1256
BstF5I GGATG 6 cut(s) 198, 743, 940, 985, 1185, 1217
BstH2I RGCGCY 1 cut(s) 723
BstHHI GCGC 2 cut(s) 368, 722
BstMAI GTCTC 3 cut(s) 414, 467, 940
BstMWI GCNNNNNNNGC 5 cut(s) 11, 688, 1097, 1333, 1342
BstNI CCWGG 2 cut(s) 255, 1177
BstNSI RCATGY 2 cut(s) 111, 348
BstPAI GACNNNNGTC 1 cut(s) 995
BstSCI CCNGG 2 cut(s) 253, 1175
BstV1I GCAGC 6 cut(s) 89, 225, 373, 905, 1112, 1222
BstV2I GAAGAC 1 cut(s) 611
BstX2I RGATCY 2 cut(s) 1225, 1317
BstYI RGATCY 2 cut(s) 1225, 1317
BstZ17I GTATAC 2 cut(s) 145, 1189
BsuRI GGCC 4 cut(s) 279, 323, 417, 576
BtsCI GGATG 6 cut(s) 198, 743, 940, 985, 1185, 1217
BtsIMutI CAGTG 2 cut(s) 670, 1328
CfoI GCGC 2 cut(s) 368, 722
Cfr10I RCCGGY 1 cut(s) 487
Cfr13I GGNCC 3 cut(s) 278, 416, 808
CseI GACGC 1 cut(s) 219
Csp6I GTAC 1 cut(s) 1012
CviAII CATG 7 cut(s) 108, 157, 161, 345, 363, 406, 1076
CviQI GTAC 1 cut(s) 1012
DdeI CTNAG 4 cut(s) 330, 683, 1044, 1256
DraI TTTAAA 1 cut(s) 883
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
EaeI YGGCCR 1 cut(s) 574
Eam1104I CTCTTC 1 cut(s) 1102
EarI CTCTTC 1 cut(s) 1102
EciI GGCGGA 1 cut(s) 1176
Eco31I GGTCTC 1 cut(s) 467
Eco32I GATATC 1 cut(s) 1269
Eco47I GGWCC 1 cut(s) 808
Eco57I CTGAAG 1 cut(s) 1164
Eco88I CYCGRG 1 cut(s) 411
EcoRII CCWGG 2 cut(s) 253, 1175
EcoRV GATATC 1 cut(s) 1269
EcoT22I ATGCAT 1 cut(s) 162
FaeI CATG 7 cut(s) 111, 160, 164, 348, 366, 409, 1079
FalI AAGNNNNNCTT 2 cut(s) 603, 635
FaqI GGGAC 4 cut(s) 158, 1076, 1086, 1151
FatI CATG 7 cut(s) 107, 156, 160, 344, 362, 405, 1075
FbaI TGATCA 1 cut(s) 312
FblI GTMKAC 3 cut(s) 144, 648, 1188
Fnu4HI GCNGC 8 cut(s) 6, 78, 239, 342, 387, 894, 1101, 1236
FokI GGATG 6 cut(s) 205, 730, 947, 972, 1192, 1224
Fsp4HI GCNGC 8 cut(s) 6, 78, 239, 342, 387, 894, 1101, 1236
FspBI CTAG 4 cut(s) 335, 584, 911, 1232
GlaI GCGC 2 cut(s) 367, 721
GluI GCNGC 8 cut(s) 6, 78, 239, 342, 387, 894, 1101, 1236
GsaI CCCAGC 3 cut(s) 179, 726, 1204
HaeII RGCGCY 1 cut(s) 723
HaeIII GGCC 4 cut(s) 279, 323, 417, 576
HapII CCGG 2 cut(s) 488, 570
HgaI GACGC 1 cut(s) 219
HhaI GCGC 2 cut(s) 368, 722
Hin1II CATG 7 cut(s) 111, 160, 164, 348, 366, 409, 1079
Hin6I GCGC 2 cut(s) 366, 720
HinP1I GCGC 2 cut(s) 366, 720
HincII GTYRAC 2 cut(s) 649, 966
HindII GTYRAC 2 cut(s) 649, 966
HindIII AAGCTT 1 cut(s) 523
HinfI GANTC 7 cut(s) 245, 517, 546, 737, 851, 1064, 1164
HpaI GTTAAC 1 cut(s) 966
HpaII CCGG 2 cut(s) 488, 570
HphI GGTGA 3 cut(s) 836, 916, 937
Hpy166II GTNNAC 8 cut(s) 91, 113, 145, 350, 640, 649, 966, 1189
Hpy188I TCNGA 7 cut(s) 138, 299, 808, 990, 1045, 1059, 1288
Hpy188III TCNNGA 3 cut(s) 72, 121, 411
Hpy8I GTNNAC 8 cut(s) 91, 113, 145, 350, 640, 649, 966, 1189
HpyAV CCTTC 5 cut(s) 56, 447, 508, 616, 1139
HpyCH4III ACNGT 4 cut(s) 142, 358, 665, 1011
HpyCH4IV ACGT 2 cut(s) 309, 996
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 688, 1097, 1333, 1342
HpyF3I CTNAG 4 cut(s) 330, 683, 1044, 1256
HpySE526I ACGT 2 cut(s) 309, 996
Hsp92II CATG 7 cut(s) 111, 160, 164, 348, 366, 409, 1079
HspAI GCGC 2 cut(s) 366, 720
Ksp22I TGATCA 1 cut(s) 312
KspAI GTTAAC 1 cut(s) 966
LmnI GCTCC 3 cut(s) 496, 1121, 1333
Lsp1109I GCAGC 6 cut(s) 89, 225, 373, 905, 1112, 1222
LweI GCATC 2 cut(s) 217, 994
MaeI CTAG 4 cut(s) 335, 584, 911, 1232
MaeII ACGT 2 cut(s) 309, 996
MaeIII GTNAC 1 cut(s) 400
MboII GAAGA 5 cut(s) 190, 453, 594, 611, 1119
MfeI CAATTG 2 cut(s) 1250, 1328
MflI RGATCY 2 cut(s) 1225, 1317
MlsI TGGCCA 1 cut(s) 576
MluCI AATT 7 cut(s) 554, 625, 952, 1029, 1113, 1250, 1328
MluNI TGGCCA 1 cut(s) 576
MlyI GAGTC 5 cut(s) 239, 555, 731, 1058, 1173
MmeI TCCRAC 3 cut(s) 518, 714, 1013
Mox20I TGGCCA 1 cut(s) 576
Mph1103I ATGCAT 1 cut(s) 162
MscI TGGCCA 1 cut(s) 576
MseI TTAA 6 cut(s) 53, 188, 435, 882, 965, 1348
MslI CAYNNNNRTG 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 576
MspCI CTTAAG 1 cut(s) 187
MspI CCGG 2 cut(s) 488, 570
MspR9I CCNGG 2 cut(s) 255, 1177
MunI CAATTG 2 cut(s) 1250, 1328
MvaI CCWGG 2 cut(s) 255, 1177
MwoI GCNNNNNNNGC 5 cut(s) 11, 688, 1097, 1333, 1342
NlaIII CATG 7 cut(s) 111, 160, 164, 348, 366, 409, 1079
NlaIV GGNNCC 3 cut(s) 260, 492, 1319
NsiI ATGCAT 1 cut(s) 162
NspI RCATGY 2 cut(s) 111, 348
PaeR7I CTCGAG 1 cut(s) 411
PciI ACATGT 1 cut(s) 107
PcsI WCGNNNNNNNCGW 1 cut(s) 746
PfeI GAWTC 2 cut(s) 517, 851
PfoI TCCNGGA 1 cut(s) 1175
PkrI GCNGC 8 cut(s) 7, 79, 240, 343, 388, 895, 1102, 1237
PleI GAGTC 5 cut(s) 239, 554, 731, 1058, 1172
PpsI GAGTC 5 cut(s) 239, 554, 731, 1058, 1172
Ppu21I YACGTR 1 cut(s) 310
PscI ACATGT 1 cut(s) 107
PshAI GACNNNNGTC 1 cut(s) 995
PsiI TTATAA 1 cut(s) 215
Psp6I CCWGG 2 cut(s) 253, 1175
PspFI CCCAGC 3 cut(s) 175, 722, 1200
PspGI CCWGG 2 cut(s) 253, 1175
PspN4I GGNNCC 3 cut(s) 260, 492, 1319
PspPI GGNCC 3 cut(s) 278, 416, 808
PsuI RGATCY 2 cut(s) 1225, 1317
RsaI GTAC 1 cut(s) 1013
RsaNI GTAC 1 cut(s) 1012
RseI CAYNNNNRTG 1 cut(s) 96
SalI GTCGAC 1 cut(s) 647
SaqAI TTAA 6 cut(s) 53, 188, 435, 882, 965, 1348
SatI GCNGC 8 cut(s) 6, 78, 239, 342, 387, 894, 1101, 1236
Sau96I GGNCC 3 cut(s) 278, 416, 808
SchI GAGTC 5 cut(s) 239, 555, 731, 1058, 1173
ScrFI CCNGG 2 cut(s) 255, 1177
SfaNI GCATC 2 cut(s) 217, 994
Sfr274I CTCGAG 1 cut(s) 411
SinI GGWCC 1 cut(s) 808
SlaI CTCGAG 1 cut(s) 411
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 2 cut(s) 187, 411
SmoI CTYRAG 2 cut(s) 187, 411
Sse9I AATT 7 cut(s) 554, 625, 952, 1029, 1113, 1250, 1328
SsiI CCGC 3 cut(s) 342, 1161, 1223
SspI AATATT 1 cut(s) 289
SspMI CTAG 4 cut(s) 335, 584, 911, 1232
StyD4I CCNGG 2 cut(s) 253, 1175
TaaI ACNGT 4 cut(s) 142, 358, 665, 1011
TaiI ACGT 2 cut(s) 312, 999
TaqI TCGA 8 cut(s) 84, 120, 243, 412, 461, 648, 740, 749
TasI AATT 7 cut(s) 554, 625, 952, 1029, 1113, 1250, 1328
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 2 cut(s) 517, 851
Tru1I TTAA 6 cut(s) 53, 188, 435, 882, 965, 1348
Tru9I TTAA 6 cut(s) 53, 188, 435, 882, 965, 1348
TscAI CASTG 2 cut(s) 670, 1328
TseI GCWGC 7 cut(s) 5, 77, 238, 386, 893, 1100, 1235
TspDTI ATGAA 3 cut(s) 351, 969, 1271
TspGWI ACGGA 1 cut(s) 1327
TspRI CASTG 2 cut(s) 670, 1328
Vha464I CTTAAG 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 808
XapI RAATTY 1 cut(s) 1029
XceI RCATGY 2 cut(s) 111, 348
XcmI CCANNNNNNNNNTGG 1 cut(s) 818
XhoI CTCGAG 1 cut(s) 411
XmiI GTMKAC 3 cut(s) 144, 648, 1188
XspI CTAG 4 cut(s) 335, 584, 911, 1232
Zsp2I ATGCAT 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.