RchiOBHm_Chr1g0377001

Protein phosphatase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0008626
Physical Location & Seq
Reverse (-)
64143089 .. 64145527
2439 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 510 bp
ATGAGTAACCGAGGCCGAGTTAGATGGGATGAGGAGAATCTGGGAGAAATTGAAGCAAATAAACCTGTAAGGCAGAAAATTACTGAGCCGAAGACGCCGTATCACCCCATGCAAACTGATGATGAAGATGATGAGGGATCTCTGTCTCCTATACGGCGGAGTCGGTTTGATGAATGTATTGGTGACGCAGTGCATGCAGAAGCGATACGTTCTGCTTTGAGTGATGTGGCATCATCAAGTACAAAGAAGACCACGAGATCTACTGGCTGGACATCATCCGAGGATGAAGCTGATGCTATGGATCAAGATGGTGAAGATTCAGACAAAAGTGGCAGAAGTTTCAGGGAGCATAGAAAAGCTCATTATGATGAATTCCAGAAAGTAAAAGAACTCAGACGGAAAGGTTCCCTTCTCGATGATGAAGATGAGGACGAGGATGTTGAGATGAACAAGGTAAAGAGATCCGATCCCCCTTCATCTTCAGGTGCAGCCAACCCTAATGGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IPP-2

Protein Analysis

169

Amino Acids

18.97

Weight (kDa)

4.79

Isoelectric Point (pI)

71.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPP-2 PF04979 7 - 143 9.1e-25 Protein phosphatase inhibitor 2 (IPP-2)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 157
AclWI GGATC 4 cut(s) 145, 309, 456, 461
AcsI RAATTY 1 cut(s) 371
AcuI CTGAAG 1 cut(s) 465
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 1 cut(s) 241
AgsI TTSAA 1 cut(s) 53
AluBI AGCT 3 cut(s) 290, 359, 506
AluI AGCT 3 cut(s) 290, 359, 506
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 4 cut(s) 145, 309, 456, 461
AoxI GGCC 1 cut(s) 13
ApeKI GCWGC 1 cut(s) 488
ApoI RAATTY 1 cut(s) 371
AsuHPI GGTGA 3 cut(s) 95, 194, 323
BauI CACGAG 1 cut(s) 253
BbsI GAAGAC 2 cut(s) 98, 254
BbvI GCAGC 1 cut(s) 500
BccI CCATC 2 cut(s) 18, 302
BceAI ACGGC 2 cut(s) 82, 170
BcoDI GTCTC 1 cut(s) 150
BglII AGATCT 1 cut(s) 257
BisI GCNGC 1 cut(s) 489
BlsI GCNGC 1 cut(s) 490
BmiI GGNNCC 1 cut(s) 406
BmsI GCATC 2 cut(s) 239, 283
BpiI GAAGAC 2 cut(s) 98, 254
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 10, 279
Bse1I ACTGG 1 cut(s) 268
BseDI CCNNGG 2 cut(s) 10, 279
BseGI GGATG 4 cut(s) 34, 275, 289, 442
BseMII CTCAG 2 cut(s) 75, 406
BseNI ACTGG 1 cut(s) 268
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 500
BsgI GTGCAG 1 cut(s) 507
BshFI GGCC 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 150
BsnI GGCC 1 cut(s) 15
Bsp143I GATC 5 cut(s) 137, 257, 301, 461, 466
BspACI CCGC 1 cut(s) 157
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 2 cut(s) 76, 405
BspLI GGNNCC 1 cut(s) 406
BspPI GGATC 4 cut(s) 145, 309, 456, 461
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 2 cut(s) 10, 279
BssMI GATC 5 cut(s) 137, 257, 301, 461, 466
BssNI GRCGYC 1 cut(s) 95
BssSI CACGAG 1 cut(s) 253
Bst2BI CACGAG 1 cut(s) 253
BstACI GRCGYC 1 cut(s) 95
BstAPI GCANNNNNTGC 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 3 cut(s) 84, 392, 507
BstF5I GGATG 4 cut(s) 34, 275, 289, 442
BstKTI GATC 5 cut(s) 140, 260, 304, 464, 469
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 5 cut(s) 137, 257, 301, 461, 466
BstMWI GCNNNNNNNGC 2 cut(s) 94, 194
BstNSI RCATGY 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 500
BstV2I GAAGAC 2 cut(s) 98, 254
BstX2I RGATCY 3 cut(s) 137, 257, 461
BstYI RGATCY 3 cut(s) 137, 257, 461
BsuRI GGCC 1 cut(s) 15
BtsCI GGATG 4 cut(s) 34, 275, 289, 442
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 195
CseI GACGC 2 cut(s) 103, 194
Csp6I GTAC 1 cut(s) 240
CviAII CATG 2 cut(s) 109, 194
CviJI RGCY 7 cut(s) 15, 88, 267, 290, 359, 491, 506
CviKI_1 RGCY 7 cut(s) 15, 88, 267, 290, 359, 491, 506
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 3 cut(s) 84, 392, 507
DpnI GATC 5 cut(s) 139, 259, 303, 463, 468
DpnII GATC 5 cut(s) 137, 257, 301, 461, 466
EciI GGCGGA 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 465
EcoRI GAATTC 1 cut(s) 371
FaeI CATG 2 cut(s) 112, 197
FaiI YATR 6 cut(s) 110, 152, 195, 299, 351, 366
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FatI CATG 2 cut(s) 108, 193
Fnu4HI GCNGC 1 cut(s) 489
FokI GGATG 4 cut(s) 41, 262, 296, 449
Fsp4HI GCNGC 1 cut(s) 489
GluI GCNGC 1 cut(s) 489
HaeIII GGCC 1 cut(s) 15
HgaI GACGC 2 cut(s) 103, 194
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 2 cut(s) 112, 197
HinfI GANTC 3 cut(s) 37, 160, 317
HphI GGTGA 3 cut(s) 95, 194, 323
Hpy188I TCNGA 4 cut(s) 280, 322, 395, 466
Hpy188III TCNNGA 3 cut(s) 305, 376, 413
HpyAV CCTTC 2 cut(s) 419, 483
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 4 cut(s) 112, 193, 197, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 194
HpyF3I CTNAG 3 cut(s) 84, 392, 507
HpySE526I ACGT 1 cut(s) 208
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 2 cut(s) 112, 197
Kzo9I GATC 5 cut(s) 137, 257, 301, 461, 466
LmnI GCTCC 2 cut(s) 346, 503
LpnPI CCDG 7 cut(s) 26, 78, 249, 253, 328, 389, 468
Lsp1109I GCAGC 1 cut(s) 500
LweI GCATC 2 cut(s) 239, 283
MaeII ACGT 1 cut(s) 208
MaeIII GTNAC 2 cut(s) 5, 182
MalI GATC 5 cut(s) 139, 259, 303, 463, 468
MboI GATC 5 cut(s) 137, 257, 301, 461, 466
MboII GAAGA 6 cut(s) 103, 137, 259, 326, 434, 471
MflI RGATCY 3 cut(s) 137, 257, 461
MluCI AATT 3 cut(s) 48, 78, 371
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 6 cut(s) 5, 25, 127, 274, 421, 427
MslI CAYNNNNRTG 1 cut(s) 366
MwoI GCNNNNNNNGC 2 cut(s) 94, 194
NdeII GATC 5 cut(s) 137, 257, 301, 461, 466
NlaIII CATG 2 cut(s) 112, 197
NlaIV GGNNCC 1 cut(s) 406
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 182
NspI RCATGY 1 cut(s) 197
PaeI GCATGC 1 cut(s) 197
PfeI GAWTC 2 cut(s) 37, 317
PkrI GCNGC 1 cut(s) 490
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 406
PsuI RGATCY 3 cut(s) 137, 257, 461
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
RseI CAYNNNNRTG 1 cut(s) 366
SatI GCNGC 1 cut(s) 489
Sau3AI GATC 5 cut(s) 137, 257, 301, 461, 466
SchI GAGTC 1 cut(s) 169
SetI ASST 8 cut(s) 67, 211, 292, 361, 406, 456, 487, 508
SfaNI GCATC 2 cut(s) 239, 283
SmiMI CAYNNNNRTG 1 cut(s) 366
SphI GCATGC 1 cut(s) 197
Sse9I AATT 3 cut(s) 48, 78, 371
SsiI CCGC 1 cut(s) 157
TaiI ACGT 1 cut(s) 211
TaqI TCGA 1 cut(s) 414
TasI AATT 3 cut(s) 48, 78, 371
TatI WGTACW 1 cut(s) 239
TfiI GAWTC 2 cut(s) 37, 317
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 488
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 7 cut(s) 138, 186, 300, 384, 435, 461, 465
TspGWI ACGGA 1 cut(s) 412
TspRI CASTG 1 cut(s) 195
XapI RAATTY 1 cut(s) 371
XceI RCATGY 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.