RchiOBHm_Chr1g0382491

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0011864
Physical Location & Seq
Forward (+)
67341130 .. 67341870
741 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 378 bp
ATGGGGTTCATCGGCGGCGGCGGTGACAAGGTGCACCACCACCACCACCACAGCCACCAGAATCATCTGAGTTTTCACTTTCTGAAGAAGGAAGCGATGGACATCCCAAAAGGGTGTATGGCGGTGATAGTGGGCCAGGGCGAGGAGCAGCAGAGGTTTGTGATTCCGGTGGTTCACATCAACCACCCGCTCTTCATTCAGCTGCTGGAGGAAGCCGAGAAGGAGTACGGTTTCGACCACGACGGTCCGATCACTATCCCGTGCCACGTGGAGGAGTTCCTCGCCGTTGAGGGCTTGATTGATAAGGAGAAGTCGGCGGTCAACGATGAGCAGCACCACCACCATCATCATCACCATGTGTGGTGTTTTAGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

125

Amino Acids

14.39

Weight (kDa)

6.12

Isoelectric Point (pI)

29.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 29 - 95 3e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 190
AciI CCGC 6 cut(s) 15, 18, 21, 122, 188, 317
AcuI CTGAAG 1 cut(s) 104
AcvI CACGTG 1 cut(s) 268
AdeI CACNNNGTG 1 cut(s) 358
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 142, 271
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw21I GWGCWC 1 cut(s) 36
Alw44I GTGCAC 1 cut(s) 32
AlwNI CAGNNNCTG 1 cut(s) 205
AoxI GGCC 1 cut(s) 133
ApaLI GTGCAC 1 cut(s) 32
ApeKI GCWGC 3 cut(s) 148, 202, 331
AspS9I GGNCC 2 cut(s) 133, 245
AsuHPI GGTGA 3 cut(s) 35, 136, 344
AvaII GGWCC 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 36
BbrPI CACGTG 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 3 cut(s) 160, 189, 343
BccI CCATC 2 cut(s) 91, 351
BceAI ACGGC 1 cut(s) 269
BciT130I CCWGG 1 cut(s) 137
BisI GCNGC 5 cut(s) 16, 19, 149, 203, 332
BlsI GCNGC 5 cut(s) 17, 20, 150, 204, 333
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 2 cut(s) 133, 245
BmrFI CCNGG 1 cut(s) 137
BpmI CTGGAG 1 cut(s) 227
BsaAI YACGTR 1 cut(s) 268
BsaBI GATNNNNATC 2 cut(s) 101, 254
BsaJI CCNNGG 1 cut(s) 136
BsaWI WCCGGW 1 cut(s) 166
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 271
Bse8I GATNNNNATC 2 cut(s) 101, 254
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 102
BseJI GATNNNNATC 2 cut(s) 101, 254
BseLI CCNNNNNNNGG 2 cut(s) 142, 271
BseMII CTCAG 1 cut(s) 59
BseRI GAGGAG 2 cut(s) 158, 287
BseSI GKGCMC 1 cut(s) 36
BseXI GCAGC 3 cut(s) 160, 189, 343
BshFI GGCC 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 1 cut(s) 167
BslI CCNNNNNNNGG 2 cut(s) 142, 271
BsnI GGCC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 249
BspACI CCGC 6 cut(s) 15, 18, 21, 122, 188, 317
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 60
BspQI GCTCTTC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 2 cut(s) 230, 245
Bst6I CTCTTC 1 cut(s) 197
BstBAI YACGTR 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 102
BstKTI GATC 1 cut(s) 252
BstMBI GATC 1 cut(s) 249
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 135
BstSLI GKGCMC 1 cut(s) 36
BstV1I GCAGC 3 cut(s) 160, 189, 343
BsuRI GGCC 1 cut(s) 135
BtgZI GCGATG 1 cut(s) 110
BtsCI GGATG 1 cut(s) 102
CaiI CAGNNNCTG 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 133, 245
CpoI CGGWCCG 1 cut(s) 245
Csp6I GTAC 1 cut(s) 226
CspI CGGWCCG 1 cut(s) 245
CviAII CATG 1 cut(s) 356
CviJI RGCY 6 cut(s) 54, 135, 202, 215, 294, 374
CviKI_1 RGCY 6 cut(s) 54, 135, 202, 215, 294, 374
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 68
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
DraIII CACNNNGTG 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 104
Eco72I CACGTG 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 135
FaeI CATG 1 cut(s) 359
FaiI YATR 2 cut(s) 119, 357
FatI CATG 1 cut(s) 355
FauI CCCGC 1 cut(s) 195
Fnu4HI GCNGC 5 cut(s) 16, 19, 149, 203, 332
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 5 cut(s) 16, 19, 149, 203, 332
GluI GCNGC 5 cut(s) 16, 19, 149, 203, 332
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 1 cut(s) 135
HapII CCGG 1 cut(s) 167
Hin1II CATG 1 cut(s) 359
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 2 cut(s) 61, 163
HpaII CCGG 1 cut(s) 167
HphI GGTGA 3 cut(s) 35, 136, 344
Hpy166II GTNNAC 3 cut(s) 34, 175, 322
Hpy188I TCNGA 3 cut(s) 69, 84, 249
Hpy8I GTNNAC 3 cut(s) 34, 175, 322
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 2 cut(s) 82, 214
HpyCH4III ACNGT 2 cut(s) 230, 245
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 1 cut(s) 34
HpyF3I CTNAG 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 1 cut(s) 359
Kzo9I GATC 1 cut(s) 249
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 5 cut(s) 71, 122, 149, 180, 191
Lsp1109I GCAGC 3 cut(s) 160, 189, 343
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 23
MalI GATC 1 cut(s) 251
MbiI CCGCTC 1 cut(s) 190
MboI GATC 1 cut(s) 249
MboII GAAGA 2 cut(s) 97, 184
MhlI GDGCHC 1 cut(s) 36
MnlI CCTC 6 cut(s) 136, 147, 202, 265, 283, 290
MslI CAYNNNNRTG 1 cut(s) 354
MspA1I CMGCKG 1 cut(s) 202
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 137
NdeII GATC 1 cut(s) 249
NlaIII CATG 1 cut(s) 359
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 23
PciSI GCTCTTC 1 cut(s) 197
PfeI GAWTC 2 cut(s) 61, 163
PkrI GCNGC 5 cut(s) 17, 20, 150, 204, 333
PmaCI CACGTG 1 cut(s) 268
PmlI CACGTG 1 cut(s) 268
Ppu21I YACGTR 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 135
PspCI CACGTG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 135
PspPI GGNCC 2 cut(s) 133, 245
PstNI CAGNNNCTG 1 cut(s) 205
PvuII CAGCTG 1 cut(s) 202
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 354
Rsr2I CGGWCCG 1 cut(s) 245
RsrII CGGWCCG 1 cut(s) 245
SapI GCTCTTC 1 cut(s) 197
SatI GCNGC 5 cut(s) 16, 19, 149, 203, 332
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 2 cut(s) 133, 245
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 1 cut(s) 36
SetI ASST 4 cut(s) 33, 158, 204, 270
SinI GGWCC 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 354
SsiI CCGC 6 cut(s) 15, 18, 21, 122, 188, 317
StyD4I CCNGG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 230, 245
TaiI ACGT 1 cut(s) 270
TaqI TCGA 1 cut(s) 234
TauI GCSGC 2 cut(s) 18, 21
TfiI GAWTC 2 cut(s) 61, 163
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 3 cut(s) 148, 202, 331
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 1 cut(s) 184
VneI GTGCAC 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.