Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007146

Physical Location & Seq

Genomic Coordinates Reverse (-)

67569093 .. 67570996

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGTGAAGAAACTAAGCCGGAAGAAGCTAAGGTAGAGGAGGTTAAGCCAGAAGAGAATGCAGAGGAGAAAGCAGAAGAGAAGAAAGAAGAGAAGGCAGAGGAGGAGAAGAAGGAAGAGCCAAAACCACCAGCTCCTTTTGTCCTATTTGTGGACTTGCATTGTGTGGGGTGTGCAAAGAAAATTGAGAGGTCTATCATGAAAATTAGAGGGGTGGAAGGGGTTGTGATAGACATGGCTAAGAATGAAGTGACCATAAAGGGAATAGTGGAGCCTCAAGCAGTGTGCAACAAAATCATGAAAAGAACCAAGAGAAAGGCTCAAGTCTTGTCCCCATTACCAGCTGCTGAGGGTGACCCTATTCCAGAAGTTGTTGCTTCTCAGGTCAGTGGAGTAACAACTGTGGAACTCCAAGTTAACATGCACTGTGAGGCCTGTGCAGAACAACTTAAGAAAAAGATACTCAAAATGAGAGGGGTTCAAAATGCCGTGACTGATCATACTAGCGGGAAGGTGACCGTGACGGGGACAATGGACGGCGACAAACTAGTAGACTACGTTTACAGACGAACCAGAAAACAAGCCAAAATCGTACCACAACCGGAGCCTGAACCCGAGAAGAAAGAAGAACCTGCGGCGGAGAAGCCAGCCGAAGAATCAAAGCCGGAAGAGAATGCGGAGAAGAAAGAGGAGGAAAAGCCCGCAGAAGAGGCAAAGAAAGAAGAAGAGGAGGAGACCAAGATTGAAGAGCACAACGACGTCGTTAATGGTATACCGGAGGAGGAATTGAAGAGGATGGTGCAGCACTATTATCAGCCGCTTTACGTGTTTGAGAGAATCCCGCCGCCGCAGCTCTTCAGCGATGAGAATCCAAATGCATGTTGCATTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04978 map04978

Pfam Domains

Protein Families

HMA

Protein Analysis

297

Amino Acids

33.49

Weight (kDa)

5.03

Isoelectric Point (pI)

64.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	49 - 92	1e-10	Heavy-metal-associated domain
HMA	PF00403	138 - 181	6.8e-10	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24580 AT5G24580 AT5G24580 AT5G24580 AT5G24580
fragaria_vesca	FvH4_7g33060
malus_domestica	MD01G1229700.v1.1 MD07G1301700.v1.1
prunus_persica	Prupe.2G320300_v2.0.a1
pyrus_communis	pycom01g23780 pycom07g27450
rosa_chinensis	RchiOBHm_Chr1g0330391 RchiOBHm_Chr1g0383071
rosa_laevigata	RLG00000026135
rosa_multiflora	Rmu_sc0000634.1_g000006 Rmu_sc0008563.1_g000016 Rmu_sc0033623.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277640
rosa_rugosa	Rorug01G0438100
rosa_samantha	Rh1AG463800 Rh1BG421000 Rh1CG434500 Rh1DG453600
rosa_wichuraiana	Rw1G008460 Rw1G040840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	762
Acc36I	ACCTGC	1 cut(s)	640
AccI	GTMKAC	2 cut(s)	552, 772
AciI	CCGC	9 cut(s)	507, 635, 638, 677, 702, 818, 842, 845, 848
AcuI	CTGAAG	1 cut(s)	841
AcyI	GRCGYC	1 cut(s)	759
AfaI	GTAC	1 cut(s)	594
AfiI	CCNNNNNNNGG	2 cut(s)	151, 525
AflII	CTTAAG	1 cut(s)	449
AflIII	ACRYGT	1 cut(s)	825
AgsI	TTSAA	3 cut(s)	482, 746, 790
AhlI	ACTAGT	1 cut(s)	547
AluBI	AGCT	4 cut(s)	29, 134, 344, 853
AluI	AGCT	4 cut(s)	29, 134, 344, 853
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	1 cut(s)	728
AlwNI	CAGNNNCTG	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	614
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	3 cut(s)	344, 802, 850
AsuHPI	GGTGA	3 cut(s)	17, 365, 526
AvaI	CYCGRG	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	753
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	3 cut(s)	331, 814, 862
BccI	CCATC	1 cut(s)	790
BceAI	ACGGC	2 cut(s)	473, 553
BclI	TGATCA	1 cut(s)	496
BcoDI	GTCTC	1 cut(s)	728
BcuI	ACTAGT	1 cut(s)	547
BfaI	CTAG	2 cut(s)	504, 548
BfrI	CTTAAG	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	640
BisI	GCNGC	7 cut(s)	345, 636, 803, 818, 845, 848, 851
BlsI	GCNGC	7 cut(s)	346, 637, 804, 819, 846, 849, 852
BmeT110I	CYCGRG	1 cut(s)	614
BmiI	GGNNCC	2 cut(s)	273, 606
BplI	GAGNNNNNCTC	2 cut(s)	304, 336
Bpu10I	CCTNAGC	2 cut(s)	30, 348
BpuEI	CTTGAG	2 cut(s)	261, 306
BsaAI	YACGTR	1 cut(s)	826
BsaBI	GATNNNNATC	1 cut(s)	867
BsaHI	GRCGYC	1 cut(s)	759
BsaI	GGTCTC	1 cut(s)	728
BsaWI	WCCGGW	2 cut(s)	601, 775
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 525
Bse8I	GATNNNNATC	1 cut(s)	867
BseGI	GGATG	1 cut(s)	801
BseJI	GATNNNNATC	1 cut(s)	867
BseLI	CCNNNNNNNGG	2 cut(s)	151, 525
BseMII	CTCAG	2 cut(s)	339, 395
BseRI	GAGGAG	8 cut(s)	53, 80, 116, 119, 704, 743, 746, 794
BseXI	GCAGC	3 cut(s)	331, 814, 862
BsgI	GTGCAG	2 cut(s)	459, 821
BshFI	GGCC	1 cut(s)	434
BsiHKAI	GWGCWC	1 cut(s)	753
BsiHKCI	CYCGRG	1 cut(s)	614
BsiSI	CCGG	4 cut(s)	20, 602, 665, 776
BslFI	GGGAC	2 cut(s)	316, 541
BslI	CCNNNNNNNGG	2 cut(s)	151, 525
BsmAI	GTCTC	1 cut(s)	728
BsmFI	GGGAC	2 cut(s)	316, 541
BsmI	GAATGC	2 cut(s)	64, 679
BsnI	GGCC	1 cut(s)	434
Bso31I	GGTCTC	1 cut(s)	728
BsoBI	CYCGRG	1 cut(s)	614
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp143I	GATC	1 cut(s)	496
BspACI	CCGC	9 cut(s)	507, 635, 638, 677, 702, 818, 842, 845, 848
BspANI	GGCC	1 cut(s)	434
BspCNI	CTCAG	2 cut(s)	340, 394
BspHI	TCATGA	2 cut(s)	198, 297
BspLI	GGNNCC	2 cut(s)	273, 606
BspMI	ACCTGC	1 cut(s)	640
BspQI	GCTCTTC	3 cut(s)	111, 741, 860
BspTI	CTTAAG	1 cut(s)	449
BspTNI	GGTCTC	1 cut(s)	728
BssMI	GATC	1 cut(s)	496
BssNAI	GTATAC	1 cut(s)	773
BssNI	GRCGYC	1 cut(s)	759
Bst1107I	GTATAC	1 cut(s)	773
Bst4CI	ACNGT	3 cut(s)	403, 428, 520
BstACI	GRCGYC	1 cut(s)	759
BstAFI	CTTAAG	1 cut(s)	449
BstBAI	YACGTR	1 cut(s)	826
BstC8I	GCNNGC	2 cut(s)	648, 702
BstDEI	CTNAG	5 cut(s)	15, 30, 240, 348, 381
BstEII	GGTNACC	2 cut(s)	353, 514
BstF5I	GGATG	1 cut(s)	801
BstKTI	GATC	1 cut(s)	499
BstMAI	GTCTC	1 cut(s)	728
BstMBI	GATC	1 cut(s)	496
BstMWI	GCNNNNNNNGC	2 cut(s)	710, 850
BstNSI	RCATGY	2 cut(s)	424, 882
BstPI	GGTNACC	2 cut(s)	353, 514
BstV1I	GCAGC	3 cut(s)	331, 814, 862
BstZ17I	GTATAC	1 cut(s)	773
BsuRI	GGCC	1 cut(s)	434
BtgZI	GCGATG	1 cut(s)	876
BtsCI	GGATG	1 cut(s)	801
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	3 cut(s)	288, 394, 424
BveI	ACCTGC	1 cut(s)	640
Cac8I	GCNNGC	2 cut(s)	648, 702
CaiI	CAGNNNCTG	1 cut(s)	347
CciI	TCATGA	2 cut(s)	198, 297
Csp6I	GTAC	1 cut(s)	593
CviAII	CATG	5 cut(s)	199, 235, 298, 421, 879
CviQI	GTAC	1 cut(s)	593
DdeI	CTNAG	5 cut(s)	15, 30, 240, 348, 381
DpnI	GATC	1 cut(s)	498
DpnII	GATC	1 cut(s)	496
EciI	GGCGGA	1 cut(s)	653
Eco147I	AGGCCT	1 cut(s)	434
Eco31I	GGTCTC	1 cut(s)	728
Eco57I	CTGAAG	1 cut(s)	841
Eco88I	CYCGRG	1 cut(s)	614
Eco91I	GGTNACC	2 cut(s)	353, 514
EcoO65I	GGTNACC	2 cut(s)	353, 514
EcoT22I	ATGCAT	1 cut(s)	880
FaeI	CATG	5 cut(s)	202, 238, 301, 424, 882
FaiI	YATR	9 cut(s)	200, 236, 257, 299, 422, 501, 773, 880, 892
FaqI	GGGAC	2 cut(s)	316, 541
FatI	CATG	5 cut(s)	198, 234, 297, 420, 878
FauI	CCCGC	3 cut(s)	500, 709, 849
FbaI	TGATCA	1 cut(s)	496
FblI	GTMKAC	2 cut(s)	552, 772
Fnu4HI	GCNGC	7 cut(s)	345, 636, 803, 818, 845, 848, 851
FokI	GGATG	1 cut(s)	808
Fsp4HI	GCNGC	7 cut(s)	345, 636, 803, 818, 845, 848, 851
FspBI	CTAG	2 cut(s)	504, 548
GluI	GCNGC	7 cut(s)	345, 636, 803, 818, 845, 848, 851
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	4 cut(s)	20, 602, 665, 776
Hin1I	GRCGYC	1 cut(s)	759
Hin1II	CATG	5 cut(s)	202, 238, 301, 424, 882
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	3 cut(s)	656, 837, 868
HpaI	GTTAAC	1 cut(s)	418
HpaII	CCGG	4 cut(s)	20, 602, 665, 776
HphI	GGTGA	3 cut(s)	17, 365, 526
Hpy166II	GTNNAC	5 cut(s)	154, 418, 553, 562, 773
Hpy188III	TCNNGA	3 cut(s)	199, 298, 365
Hpy8I	GTNNAC	5 cut(s)	154, 418, 553, 562, 773
Hpy99I	CGWCG	2 cut(s)	761, 764
HpyAV	CCTTC	4 cut(s)	88, 106, 212, 505
HpyCH4III	ACNGT	3 cut(s)	403, 428, 520
HpyCH4IV	ACGT	3 cut(s)	558, 759, 825
HpyCH4V	TGCA	9 cut(s)	62, 160, 176, 288, 424, 440, 802, 878, 885
HpyF10VI	GCNNNNNNNGC	2 cut(s)	710, 850
HpyF3I	CTNAG	5 cut(s)	15, 30, 240, 348, 381
HpySE526I	ACGT	3 cut(s)	558, 759, 825
Hsp92I	GRCGYC	1 cut(s)	759
Hsp92II	CATG	5 cut(s)	202, 238, 301, 424, 882
Ksp22I	TGATCA	1 cut(s)	496
KspAI	GTTAAC	1 cut(s)	418
Kzo9I	GATC	1 cut(s)	496
LguI	GCTCTTC	3 cut(s)	111, 741, 860
LmnI	GCTCC	3 cut(s)	139, 271, 604
Lsp1109I	GCAGC	3 cut(s)	331, 814, 862
MaeI	CTAG	2 cut(s)	504, 548
MaeII	ACGT	3 cut(s)	558, 759, 825
MaeIII	GTNAC	6 cut(s)	250, 353, 394, 490, 514, 520
MalI	GATC	1 cut(s)	498
MboI	GATC	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	753
MluCI	AATT	3 cut(s)	183, 204, 785
Mph1103I	ATGCAT	1 cut(s)	880
MseI	TTAA	4 cut(s)	45, 417, 450, 765
MspA1I	CMGCKG	1 cut(s)	344
MspCI	CTTAAG	1 cut(s)	449
MspI	CCGG	4 cut(s)	20, 602, 665, 776
Mva1269I	GAATGC	2 cut(s)	64, 679
MwoI	GCNNNNNNNGC	2 cut(s)	710, 850
NdeII	GATC	1 cut(s)	496
NlaIII	CATG	5 cut(s)	202, 238, 301, 424, 882
NlaIV	GGNNCC	2 cut(s)	273, 606
NmuCI	GTSAC	5 cut(s)	250, 353, 490, 514, 520
NsiI	ATGCAT	1 cut(s)	880
NspI	RCATGY	2 cut(s)	424, 882
PagI	TCATGA	2 cut(s)	198, 297
PceI	AGGCCT	1 cut(s)	434
PciSI	GCTCTTC	3 cut(s)	111, 741, 860
PctI	GAATGC	2 cut(s)	64, 679
PfeI	GAWTC	3 cut(s)	656, 837, 868
PkrI	GCNGC	7 cut(s)	346, 637, 804, 819, 846, 849, 852
Ppu21I	YACGTR	1 cut(s)	826
PspEI	GGTNACC	2 cut(s)	353, 514
PspN4I	GGNNCC	2 cut(s)	273, 606
PstNI	CAGNNNCTG	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	594
RsaNI	GTAC	1 cut(s)	593
SapI	GCTCTTC	3 cut(s)	111, 741, 860
SaqAI	TTAA	4 cut(s)	45, 417, 450, 765
SatI	GCNGC	7 cut(s)	345, 636, 803, 818, 845, 848, 851
Sau3AI	GATC	1 cut(s)	496
SduI	GDGCHC	1 cut(s)	753
SmlI	CTYRAG	3 cut(s)	276, 321, 449
SmoI	CTYRAG	3 cut(s)	276, 321, 449
SpeI	ACTAGT	1 cut(s)	547
Sse9I	AATT	3 cut(s)	183, 204, 785
SseBI	AGGCCT	1 cut(s)	434
SsiI	CCGC	9 cut(s)	507, 635, 638, 677, 702, 818, 842, 845, 848
SspMI	CTAG	2 cut(s)	504, 548
StuI	AGGCCT	1 cut(s)	434
TaaI	ACNGT	3 cut(s)	403, 428, 520
TaiI	ACGT	3 cut(s)	561, 762, 828
TasI	AATT	3 cut(s)	183, 204, 785
TauI	GCSGC	4 cut(s)	638, 820, 847, 850
TfiI	GAWTC	3 cut(s)	656, 837, 868
Tru1I	TTAA	4 cut(s)	45, 417, 450, 765
Tru9I	TTAA	4 cut(s)	45, 417, 450, 765
TscAI	CASTG	3 cut(s)	288, 394, 431
TseFI	GTSAC	5 cut(s)	250, 353, 490, 514, 520
TseI	GCWGC	3 cut(s)	344, 802, 850
Tsp45I	GTSAC	5 cut(s)	250, 353, 490, 514, 520
TspDTI	ATGAA	4 cut(s)	215, 261, 314, 879
TspRI	CASTG	3 cut(s)	288, 394, 431
Vha464I	CTTAAG	1 cut(s)	449
XceI	RCATGY	2 cut(s)	424, 882
XmiI	GTMKAC	2 cut(s)	552, 772
XspI	CTAG	2 cut(s)	504, 548
ZraI	GACGTC	1 cut(s)	760
Zsp2I	ATGCAT	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.