Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010104

Physical Location & Seq

Genomic Coordinates Forward (+)

68215771 .. 68220143

Gene Structure 4373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2040 bp

ATGCAAGCATTATTTTCATGCTCTGTAGTTTGCATTGTTCTTGTTGTGATCTTGTGGAACCTTGATGACTACAGCTGCTTGAAGACTGTAACAACATATGAAACCCTTGAAGCTGTGTGTGTAATTCCTTCTGGAACTCTTTTATCTTCCCGTTTCGGTTCATCCAAGCAGCGGAATGGGAAGAAAAGCAAGTCACCTGCAATATGTTTTATAACAGTTGGTGACCGTGGGATCGTACGAATTTGGAATTCTGAAGGTGCAGTTTGCCTATTTGAGCAGAAGTCCTCAGATGTTACTATCACCTCTGATGACGATGAATCAAAAAGGGGCTTTACTGCAGCTTTACTGCTTCCATCAGATCAAGGGCTGCTTTGTGTGACAGCTGATCAGGAGTTCCTTTTATATTCTCCTGTTGAAAGCCCTGAAGGGACCTTTGAATTTGTTCTAAGCAAAAGACTTGTAGGAAATAATGGAGAGATTCTGGATATGAAATTTCTAGGTGATGAGGAACAATTTATCGCTGTCGCCACAAATACTGAACAGGTACGAGTGTTTGATGTTGCATCCATGTCATGTTCTCATGTGTTGGCCGGTCATACTGAAATTGTTATGTGCCTTGACACCTGCGTATCAAGTTCTGGAAGAACACTTATAGTGACAGGAAGCAAGGATAATAGTGTTAGGTTGTGGGAATCAGAAAGCAGATGTTGCCTTGGTGTTGGCGTAGGTCACATGGGATCTGTTGGAGCTATTGCTTTCTCAAAGAAGCAGAGGGACTTCTTTGTCAGTGGTAGTAGTGATCGTACCCTCAAGGTCTGGAGTTTGGATGGTATCTCAGACAATGTGGAAAAGCCAATAAATTTGAAAGCAAAAGCTGTTGTAGCAGCCCACGATAAGGATATCAATTCAGTAGCTGTTGCACCAAATGATAGTTTAGTTTGTAGTGGTTCACAGGACCGCACTGCTTGTGTTTGGAGGCTTCCAGATCTTGTACCAGTAATTGTACTTAAGGGTCATAAAAGAGGGGTTTGGTCTGTAGAGTTTTCTCCAGTTGATCAATGCATTCTGACTACATCTGGTGATAAAACAATAAAGATATGGGCTATATCAGATGGCTCGTGCTTAAAATCATTTGAAGGACACATGTCAAGTGTATATCGAGCATCATTTCTTACTCGTGGGACCCAATTTATTTCTTCTGATGCTGATGGTTTGGTGAAGCTGTGGATGGTCAAAACAAATGAATGCATTGCTACATATGATCAGCATGAGGACAAGGTTTGGGCATTGACTGTTGGAAAGAAGACAGAAATGGTTGCAACTGGCAGCGGTGATGCTGCCATCAATCTGTGGTATGATTGTACTGCCTCTGATAAAGAGGAAGCTTTCCGCAGAGAGGAGGAAGGCGTCCTGAAAAGTCAAGAACTAGAAAATGCTGTCAAAGATGCTGACTATACTAAAGCAATCCAAATTGCATTTAAGCTTCGCAGGCCTCATAAACTTTATGAGTGTTTTCATGAACTTTTCAGGAAGAGAGGGGATGAAAAGCAGATAGAGAAAGCCCTTCATGACTTTGGCAACGAAGAGTTGGCGGTACTTTTTGAATATGTTAGGGAATGGAATACAAAGCCAAAGTTTTGCCATGTTGCCCAGTTCGTGTTCTTTAAAATTCTCAACATTTATAGTCCGACAGAGATTATTAAGGTAAAAGGCATTCAGAATCTTCTTGAAGCTCTCACCCCATATTCTCAGAGGCACTATAGCAGAGTAGACAGGCATGTGAGAAACACACTCCTGTTGGACTTCATTCTGCACTCGATGGCAGTTGTTGAACCAGATACAGGTGCTAGAGAATTGAATGAAGAGTCTTTGATTCCCTCTGATGTCAATCATGAGAATGAAACACGTAGTATGGAGGAGGATCGGAAACAGAAGCAGGCATCTGAAGGGTTGAAAGAAAAGGCAGCCTCGAGGAAACGGAAGTCAAAGAAATCAAAAGATGGTTCAAAGAAGAAAGCTAAAGCATCTAGCTTAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp13 WD40

Protein Analysis

679

Amino Acids

75.54

Weight (kDa)

6.26

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_2nd	PF25172	67 - 326	6.7e-20	WDR3 second beta-propeller domain
Beta-prop_WDR5	PF25175	118 - 275	1.7e-19	WDR5 beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	123 - 275	2.7e-08	MABP1/WDR62 second WD40 domain
WD40_Gbeta	PF25391	124 - 275	6.3e-09	G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd	PF25047	152 - 278	3.2e-07	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	155 - 276	5e-18	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	156 - 275	6.6e-15	THOC3 beta-propeller domain
WD40_Prp19	PF24814	158 - 276	8.4e-12	Prp19 WD40 domain
WD40_MABP1-WDR62_2nd	PF24782	171 - 410	5.3e-17	MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st	PF24817	171 - 277	1.4e-08	WDHD1 first WD40 domain
WD40	PF00400	191 - 230	2.9e-07	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	212 - 275	7.9e-07	CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd	PF25047	217 - 412	2.3e-16	TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	235 - 378	5.2e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	243 - 452	4.3e-29	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	244 - 452	9.8e-32	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	252 - 429	7.4e-14	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	288 - 451	1.6e-22	CDC20/Fizzy WD40 domain
Beta-prop_SCAP	PF24017	290 - 414	4e-09	SCAP Beta-propeller
WD40_WDHD1_1st	PF24817	290 - 380	5.7e-12	WDHD1 first WD40 domain
WD40_Prp19	PF24814	290 - 451	3.6e-24	Prp19 WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	292 - 374	1.5e-08	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	292 - 451	1.5e-32	WDR3 first beta-propeller domain
WD40	PF00400	293 - 325	2.4e-06	WD domain, G-beta repeat
EIF3I	PF24805	294 - 394	1.6e-10	EIF3I
Beta-prop_WDR5	PF25175	295 - 453	1.5e-34	WDR5 beta-propeller domain
Beta-prop_EML	PF23409	296 - 391	6.5e-08	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	296 - 456	1.4e-07	WDR36/Utp21 second beta-propeller domain
WDR55	PF24796	298 - 450	2.8e-14	WDR55
Beta-prop_EML	PF23409	318 - 462	2.2e-11	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	332 - 367	2.7e-08	WD domain, G-beta repeat
Beta-prop_WDR90_POC16_2nd	PF23393	352 - 459	5.8e-06	WDR90/POC16, second beta-propeller
WD40_Gbeta	PF25391	352 - 456	2.3e-13	G protein beta WD-40 repeat protein
EIF3I	PF24805	378 - 452	1.3e-08	EIF3I
Utp13	PF08625	474 - 607	1.8e-41	Utp13 specific WD40 associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16750
fragaria_vesca	FvH4_7g34000 FvH4_7g34000
malus_domestica	MD01G1236400.v1.1 MD07G1309100.v1.1
prunus_persica	Prupe.2G326400_v2.0.a1 Prupe.2G326400_v2.0.a1
pyrus_communis	pycom01g24430 pycom07g28110
rosa_chinensis	RchiOBHm_Chr1g0384251
rosa_laevigata	RLG00000026054
rosa_multiflora	Rmu_sc0011271.1_g000002
rosa_roxburghii	Rroxscaffold_4G00276810
rosa_rugosa	Rorug01G0446100 Rorug01G0446200 Rorug01G0446200
rosa_samantha	Rh1AG471700 Rh1BG429400 Rh1CG442000 Rh1DG462100
rosa_wichuraiana	Rw1G040090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	212
AarI	CACCTGC	2 cut(s)	205, 632
AasI	GACNNNNNNGTC	1 cut(s)	782
AbsI	CCTCGAGG	1 cut(s)	1969
Acc36I	ACCTGC	2 cut(s)	205, 632
AccI	GTMKAC	1 cut(s)	1770
AciI	CCGC	5 cut(s)	172, 958, 1329, 1390, 1592
AclWI	GGATC	3 cut(s)	239, 745, 1929
AcoI	YGGCCR	1 cut(s)	588
AcsI	RAATTY	6 cut(s)	240, 247, 437, 491, 859, 1668
AcuI	CTGAAG	3 cut(s)	273, 444, 1965
AcyI	GRCGYC	1 cut(s)	1407
AfaI	GTAC	7 cut(s)	237, 546, 805, 993, 1005, 1363, 1596
AfiI	CCNNNNNNNGG	4 cut(s)	171, 895, 1396, 1841
AflII	CTTAAG	1 cut(s)	1007
AflIII	ACRYGT	2 cut(s)	1143, 1904
AlwI	GGATC	3 cut(s)	239, 745, 1929
AlwNI	CAGNNNCTG	1 cut(s)	914
Ama87I	CYCGRG	1 cut(s)	1969
AoxI	GGCC	2 cut(s)	588, 1490
ApeKI	GCWGC	8 cut(s)	75, 169, 338, 367, 884, 1326, 1337, 1964
ApoI	RAATTY	6 cut(s)	240, 247, 437, 491, 859, 1668
Asp700I	GAANNNNTTC	1 cut(s)	441
AspS9I	GGNCC	3 cut(s)	429, 955, 1182
AsuHPI	GGTGA	8 cut(s)	186, 233, 292, 512, 1091, 1228, 1343, 1729
AvaI	CYCGRG	1 cut(s)	1969
AvaII	GGWCC	3 cut(s)	429, 955, 1182
BaeI	ACNNNNGTAYC	4 cut(s)	536, 569, 612, 645
BauI	CACGAG	2 cut(s)	1117, 1176
BbsI	GAAGAC	2 cut(s)	89, 1310
BbvI	GCAGC	8 cut(s)	62, 181, 350, 354, 896, 1324, 1338, 1976
BccI	CCATC	8 cut(s)	361, 821, 1106, 1202, 1222, 1349, 1813, 1994
BclI	TGATCA	3 cut(s)	385, 1054, 1261
BfaI	CTAG	4 cut(s)	497, 1427, 1848, 2028
BfmI	CTRYAG	5 cut(s)	24, 70, 336, 1035, 1759
BfrI	CTTAAG	1 cut(s)	1007
BfuAI	ACCTGC	2 cut(s)	205, 632
BglII	AGATCT	1 cut(s)	985
BisI	GCNGC	8 cut(s)	76, 170, 339, 368, 885, 1327, 1338, 1965
BlsI	GCNGC	8 cut(s)	77, 171, 340, 369, 886, 1328, 1339, 1966
Bme18I	GGWCC	3 cut(s)	429, 955, 1182
BmeT110I	CYCGRG	1 cut(s)	1969
BmgT120I	GGNCC	3 cut(s)	429, 955, 1182
BmiI	GGNNCC	4 cut(s)	59, 430, 1183, 1184
BmrI	ACTGGG	1 cut(s)	1645
BmsI	GCATC	7 cut(s)	572, 1172, 1192, 1324, 1435, 1949, 2033
BmuI	ACTGGG	1 cut(s)	1645
BoxI	GACNNNNGTC	1 cut(s)	1144
BpiI	GAAGAC	2 cut(s)	89, 1310
BpmI	CTGGAG	2 cut(s)	838, 1032
BpuEI	CTTGAG	1 cut(s)	794
BsaAI	YACGTR	1 cut(s)	1907
BsaBI	GATNNNNATC	1 cut(s)	1887
BsaHI	GRCGYC	1 cut(s)	1407
BsaJI	CCNNGG	2 cut(s)	226, 712
Bsc4I	CCNNNNNNNGG	4 cut(s)	171, 895, 1396, 1841
Bse118I	RCCGGY	1 cut(s)	590
Bse1I	ACTGG	4 cut(s)	995, 1049, 1327, 1651
Bse3DI	GCAATG	1 cut(s)	1248
Bse8I	GATNNNNATC	1 cut(s)	1887
BseDI	CCNNGG	2 cut(s)	226, 712
BseGI	GGATG	5 cut(s)	161, 563, 832, 1233, 1546
BseJI	GATNNNNATC	1 cut(s)	1887
BseLI	CCNNNNNNNGG	4 cut(s)	171, 895, 1396, 1841
BseMI	GCAATG	1 cut(s)	1248
BseMII	CTCAG	3 cut(s)	300, 849, 1763
BseNI	ACTGG	4 cut(s)	995, 1049, 1327, 1651
BseRI	GAGGAG	2 cut(s)	1412, 1931
BseXI	GCAGC	8 cut(s)	62, 181, 350, 354, 896, 1324, 1338, 1976
BsgI	GTGCAG	2 cut(s)	279, 1796
BshFI	GGCC	2 cut(s)	590, 1492
BsiHKCI	CYCGRG	1 cut(s)	1969
BsiSI	CCGG	1 cut(s)	591
BsiWI	CGTACG	1 cut(s)	235
BslFI	GGGAC	3 cut(s)	442, 788, 1195
BslI	CCNNNNNNNGG	4 cut(s)	171, 895, 1396, 1841
BsmFI	GGGAC	3 cut(s)	442, 788, 1195
BsmI	GAATGC	3 cut(s)	1062, 1250, 1713
BsnI	GGCC	2 cut(s)	590, 1492
BsoBI	CYCGRG	1 cut(s)	1969
BspACI	CCGC	5 cut(s)	172, 958, 1329, 1390, 1592
BspANI	GGCC	2 cut(s)	590, 1492
BspCNI	CTCAG	3 cut(s)	299, 848, 1762
BspHI	TCATGA	3 cut(s)	1516, 1567, 1891
BspLI	GGNNCC	4 cut(s)	59, 430, 1183, 1184
BspMAI	CTGCAG	1 cut(s)	340
BspMI	ACCTGC	2 cut(s)	205, 632
BspPI	GGATC	3 cut(s)	239, 745, 1929
BspTI	CTTAAG	1 cut(s)	1007
BsrDI	GCAATG	1 cut(s)	1248
BsrFI	RCCGGY	1 cut(s)	590
BsrI	ACTGG	4 cut(s)	995, 1049, 1327, 1651
BssAI	RCCGGY	1 cut(s)	590
BssECI	CCNNGG	2 cut(s)	226, 712
BssNI	GRCGYC	1 cut(s)	1407
BssSI	CACGAG	2 cut(s)	1117, 1176
BssT1I	CCWWGG	1 cut(s)	712
Bst2BI	CACGAG	2 cut(s)	1117, 1176
Bst4CI	ACNGT	4 cut(s)	88, 217, 227, 1294
Bst6I	CTCTTC	3 cut(s)	1526, 1578, 1857
BstACI	GRCGYC	1 cut(s)	1407
BstAFI	CTTAAG	1 cut(s)	1007
BstAPI	GCANNNNNTGC	1 cut(s)	708
BstBAI	YACGTR	1 cut(s)	1907
BstC8I	GCNNGC	3 cut(s)	6, 1490, 1938
BstDEI	CTNAG	5 cut(s)	286, 446, 835, 1749, 2032
BstDSI	CCRYGG	1 cut(s)	226
BstEII	GGTNACC	1 cut(s)	221
BstF5I	GGATG	5 cut(s)	161, 563, 832, 1233, 1546
BstMWI	GCNNNNNNNGC	3 cut(s)	708, 881, 1489
BstNSI	RCATGY	2 cut(s)	1147, 1781
BstPAI	GACNNNNGTC	1 cut(s)	1144
BstPI	GGTNACC	1 cut(s)	221
BstSFI	CTRYAG	5 cut(s)	24, 70, 336, 1035, 1759
BstV1I	GCAGC	8 cut(s)	62, 181, 350, 354, 896, 1324, 1338, 1976
BstV2I	GAAGAC	2 cut(s)	89, 1310
BstX2I	RGATCY	2 cut(s)	737, 985
BstYI	RGATCY	2 cut(s)	737, 985
BsuRI	GGCC	2 cut(s)	590, 1492
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	5 cut(s)	161, 563, 832, 1233, 1546
BtsI	GCAGTG	1 cut(s)	960
BtsIMutI	CAGTG	2 cut(s)	793, 960
BveI	ACCTGC	2 cut(s)	205, 632
Cac8I	GCNNGC	3 cut(s)	6, 1490, 1938
CaiI	CAGNNNCTG	1 cut(s)	914
CciI	TCATGA	3 cut(s)	1516, 1567, 1891
Cfr10I	RCCGGY	1 cut(s)	590
Cfr13I	GGNCC	3 cut(s)	429, 955, 1182
CseI	GACGC	1 cut(s)	1396
Csp6I	GTAC	7 cut(s)	236, 545, 804, 992, 1004, 1362, 1595
CviQI	GTAC	7 cut(s)	236, 545, 804, 992, 1004, 1362, 1595
DdeI	CTNAG	5 cut(s)	286, 446, 835, 1749, 2032
DraI	TTTAAA	1 cut(s)	1666
DrdI	GACNNNNNNGTC	1 cut(s)	782
DseDI	GACNNNNNNGTC	1 cut(s)	782
EaeI	YGGCCR	1 cut(s)	588
Eam1104I	CTCTTC	3 cut(s)	1526, 1578, 1857
EarI	CTCTTC	3 cut(s)	1526, 1578, 1857
Eco130I	CCWWGG	1 cut(s)	712
Eco147I	AGGCCT	1 cut(s)	1492
Eco32I	GATATC	1 cut(s)	901
Eco47I	GGWCC	3 cut(s)	429, 955, 1182
Eco57I	CTGAAG	3 cut(s)	273, 444, 1965
Eco88I	CYCGRG	1 cut(s)	1969
Eco91I	GGTNACC	1 cut(s)	221
EcoO109I	RGGNCCY	2 cut(s)	429, 1182
EcoO65I	GGTNACC	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	247
EcoRV	GATATC	1 cut(s)	901
EcoT14I	CCWWGG	1 cut(s)	712
EcoT22I	ATGCAT	2 cut(s)	1064, 1250
ErhI	CCWWGG	1 cut(s)	712
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FaqI	GGGAC	3 cut(s)	442, 788, 1195
FauNDI	CATATG	2 cut(s)	97, 1258
FbaI	TGATCA	3 cut(s)	385, 1054, 1261
FblI	GTMKAC	1 cut(s)	1770
Fnu4HI	GCNGC	8 cut(s)	76, 170, 339, 368, 885, 1327, 1338, 1965
FokI	GGATG	5 cut(s)	148, 550, 839, 1240, 1553
Fsp4HI	GCNGC	8 cut(s)	76, 170, 339, 368, 885, 1327, 1338, 1965
FspBI	CTAG	4 cut(s)	497, 1427, 1848, 2028
GluI	GCNGC	8 cut(s)	76, 170, 339, 368, 885, 1327, 1338, 1965
GsuI	CTGGAG	2 cut(s)	838, 1032
HaeIII	GGCC	2 cut(s)	590, 1492
HapII	CCGG	1 cut(s)	591
HgaI	GACGC	1 cut(s)	1396
Hin1I	GRCGYC	1 cut(s)	1407
HindIII	AAGCTT	2 cut(s)	1383, 1481
HinfI	GANTC	6 cut(s)	317, 478, 692, 1720, 1865, 1873
HpaII	CCGG	1 cut(s)	591
HphI	GGTGA	8 cut(s)	186, 233, 292, 512, 1091, 1228, 1343, 1729
Hpy166II	GTNNAC	2 cut(s)	950, 1771
Hpy8I	GTNNAC	2 cut(s)	950, 1771
HpyAV	CCTTC	7 cut(s)	138, 248, 419, 1130, 1397, 1574, 1940
HpyCH4III	ACNGT	4 cut(s)	88, 217, 227, 1294
HpyCH4IV	ACGT	1 cut(s)	1906
HpyF10VI	GCNNNNNNNGC	3 cut(s)	708, 881, 1489
HpyF3I	CTNAG	5 cut(s)	286, 446, 835, 1749, 2032
HpySE526I	ACGT	1 cut(s)	1906
Hsp92I	GRCGYC	1 cut(s)	1407
KflI	GGGWCCC	1 cut(s)	1182
Ksp22I	TGATCA	3 cut(s)	385, 1054, 1261
LmnI	GCTCC	1 cut(s)	746
Lsp1109I	GCAGC	8 cut(s)	62, 181, 350, 354, 896, 1324, 1338, 1976
LweI	GCATC	7 cut(s)	572, 1172, 1192, 1324, 1435, 1949, 2033
MaeI	CTAG	4 cut(s)	497, 1427, 1848, 2028
MaeII	ACGT	1 cut(s)	1906
MaeIII	GTNAC	7 cut(s)	88, 192, 221, 292, 376, 655, 728
MflI	RGATCY	2 cut(s)	737, 985
MlyI	GAGTC	1 cut(s)	1874
MmeI	TCCRAC	4 cut(s)	724, 1276, 1712, 1779
Mph1103I	ATGCAT	2 cut(s)	1064, 1250
MroXI	GAANNNNTTC	1 cut(s)	441
MseI	TTAA	5 cut(s)	1008, 1124, 1479, 1665, 1701
MslI	CAYNNNNRTG	1 cut(s)	1896
MspA1I	CMGCKG	4 cut(s)	75, 172, 383, 1329
MspCI	CTTAAG	1 cut(s)	1007
MspI	CCGG	1 cut(s)	591
Mva1269I	GAATGC	3 cut(s)	1062, 1250, 1713
MwoI	GCNNNNNNNGC	3 cut(s)	708, 881, 1489
NdeI	CATATG	2 cut(s)	97, 1258
NlaIV	GGNNCC	4 cut(s)	59, 430, 1183, 1184
NmuCI	GTSAC	5 cut(s)	192, 221, 376, 655, 728
NsiI	ATGCAT	2 cut(s)	1064, 1250
NspI	RCATGY	2 cut(s)	1147, 1781
PaeR7I	CTCGAG	1 cut(s)	1969
PagI	TCATGA	3 cut(s)	1516, 1567, 1891
PaqCI	CACCTGC	2 cut(s)	205, 632
PceI	AGGCCT	1 cut(s)	1492
PciI	ACATGT	1 cut(s)	1143
PctI	GAATGC	3 cut(s)	1062, 1250, 1713
PdmI	GAANNNNTTC	1 cut(s)	441
PfeI	GAWTC	5 cut(s)	317, 478, 692, 1720, 1873
Pfl23II	CGTACG	1 cut(s)	235
PkrI	GCNGC	8 cut(s)	77, 171, 340, 369, 886, 1328, 1339, 1966
PleI	GAGTC	1 cut(s)	1873
PpsI	GAGTC	1 cut(s)	1873
Ppu21I	YACGTR	1 cut(s)	1907
PpuMI	RGGWCCY	2 cut(s)	429, 1182
PscI	ACATGT	1 cut(s)	1143
PshAI	GACNNNNGTC	1 cut(s)	1144
PsiI	TTATAA	1 cut(s)	212
Psp5II	RGGWCCY	2 cut(s)	429, 1182
PspEI	GGTNACC	1 cut(s)	221
PspLI	CGTACG	1 cut(s)	235
PspN4I	GGNNCC	4 cut(s)	59, 430, 1183, 1184
PspPI	GGNCC	3 cut(s)	429, 955, 1182
PspPPI	RGGWCCY	2 cut(s)	429, 1182
PspXI	VCTCGAGB	1 cut(s)	1969
PstI	CTGCAG	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	914
PsuI	RGATCY	2 cut(s)	737, 985
PvuII	CAGCTG	2 cut(s)	75, 383
RsaI	GTAC	7 cut(s)	237, 546, 805, 993, 1005, 1363, 1596
RsaNI	GTAC	7 cut(s)	236, 545, 804, 992, 1004, 1362, 1595
RseI	CAYNNNNRTG	1 cut(s)	1896
SaqAI	TTAA	5 cut(s)	1008, 1124, 1479, 1665, 1701
SatI	GCNGC	8 cut(s)	76, 170, 339, 368, 885, 1327, 1338, 1965
Sau96I	GGNCC	3 cut(s)	429, 955, 1182
SchI	GAGTC	1 cut(s)	1874
SfaNI	GCATC	7 cut(s)	572, 1172, 1192, 1324, 1435, 1949, 2033
SfcI	CTRYAG	5 cut(s)	24, 70, 336, 1035, 1759
Sfr274I	CTCGAG	1 cut(s)	1969
SinI	GGWCC	3 cut(s)	429, 955, 1182
SlaI	CTCGAG	1 cut(s)	1969
SmiMI	CAYNNNNRTG	1 cut(s)	1896
SmlI	CTYRAG	3 cut(s)	809, 1007, 1969
SmoI	CTYRAG	3 cut(s)	809, 1007, 1969
SseBI	AGGCCT	1 cut(s)	1492
SsiI	CCGC	5 cut(s)	172, 958, 1329, 1390, 1592
SspMI	CTAG	4 cut(s)	497, 1427, 1848, 2028
StuI	AGGCCT	1 cut(s)	1492
StyI	CCWWGG	1 cut(s)	712
TaaI	ACNGT	4 cut(s)	88, 217, 227, 1294
TaiI	ACGT	1 cut(s)	1909
TaqI	TCGA	3 cut(s)	1159, 1817, 1970
TatI	WGTACW	2 cut(s)	1003, 1361
TfiI	GAWTC	5 cut(s)	317, 478, 692, 1720, 1873
Tru1I	TTAA	5 cut(s)	1008, 1124, 1479, 1665, 1701
Tru9I	TTAA	5 cut(s)	1008, 1124, 1479, 1665, 1701
TscAI	CASTG	2 cut(s)	793, 967
TseFI	GTSAC	5 cut(s)	192, 221, 376, 655, 728
TseI	GCWGC	8 cut(s)	75, 169, 338, 367, 884, 1326, 1337, 1964
Tsp45I	GTSAC	5 cut(s)	192, 221, 376, 655, 728
TspGWI	ACGGA	1 cut(s)	1993
TspRI	CASTG	2 cut(s)	793, 967
Vha464I	CTTAAG	1 cut(s)	1007
VpaK11BI	GGWCC	3 cut(s)	429, 955, 1182
XapI	RAATTY	6 cut(s)	240, 247, 437, 491, 859, 1668
XceI	RCATGY	2 cut(s)	1147, 1781
XhoI	CTCGAG	1 cut(s)	1969
XmiI	GTMKAC	1 cut(s)	1770
XmnI	GAANNNNTTC	1 cut(s)	441
XspI	CTAG	4 cut(s)	497, 1427, 1848, 2028
Zsp2I	ATGCAT	2 cut(s)	1064, 1250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.