Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0004471

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGCAAGGAGTTAGATTCAGTAGTGGAGCAGCTTCTTTTTCTTTGGAGGCTGATGCTGAGAATGTTCTGAGAGCAATCACACCGACCCTTGATCCAAATAGGCACAAGGGTCAGGCTGAAAGGAGCAAATCTCTCTTATGGGTTTGTACTGAAGAAAGGAGCAAATCTGCTAATATTTCCTCTCTGTTCTGGTCAGGAAATATAGCTGTTATTGGTGGGTGCCGTGAGTACACTGGTGCTCCATATTTTGCTGCTATCTCAGCATTAAAAATTGGTGCGGATCTGTCCCATGTTTTCTGTACAAGAGATGCTGCTTCGGTTATAAAAAGCTACAGTCCTGAGTTGATCGTACACCCAATTTTAGAAGAGTCATACAGTGTTAGGGATGAGGACAAGAGCTTTATCTTAGAAAACGTTCTTGGTGAAGTTGATAAGTGGATGGAAAGATTTGATTGTCTTGTAATTGGTCCGGGCCTTGGAAGGGACCCATTTCTTCTGGATTGTGTTAGCAAAATCATAAAGCATGCAAGACAGTCCAATGTTCCAATTGTCATAGATGGGGATGGACTCTTTCTTATTACAAACTGGCTTGATCTTGTAAGTGGATATCACTTGGCTGTCCTGACTCCAAATGTAAATGAATACAAGCGACTTGTACAAAAAGTTTTGAGTTGTGAAGTAAATGATGAAGATGCACGTGAGCAATTACTATCTCTTGCAAAAAGGATTGGTGGTGTCACTATACTTAGGAAAGGAAAAGCTGACCTCATTAGTGATGGTGAGACAGTTGAATCAGTGAGCATATATGGTTCTCCTCGAAGATGTGGTGGACAGGGAGATATACTTTTGGAAGGCAAGTTTTTGTTTCCGAGTTTCAGACTTTTTTTTTGTGAATGGCTTCTTTTTGTATGTGTTAACTGCGTTGCTATATTTCTTTCATGGGCCCGTCAAATTGTCACAGATGAGAATCTGAGTATCAGTTCCCGAAACCCCACAATGTTGGGTTGCATTGCTGGCTCCACTTTAATGAGGAAGGCTGCATCCCTCGCTTTTGAGAATAAGAAAAGGTCAACTCTTACTACTGACATCATAGAATGCTTGGGAAGAAGTTTGCAGGATATTTGTCCGGTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0016835 GO:0016836 GO:0016853 GO:0016854 GO:0019362 GO:0019637 GO:0019674 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0047453 GO:0051186 GO:0052856 GO:0052857 GO:0055086 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Carb_kinase

Protein Analysis

378

Amino Acids

41.66

Weight (kDa)

5.86

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_kinase	PF01256	69 - 282	6.1e-40	NAD(P)H-hydrate dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19150 AT5G19150
fragaria_vesca	FvH4_4g14760 FvH4_4g14760 FvH4_4g14760 FvH4_4g14760
malus_domestica	MD16G1186000.v1.1
prunus_persica	Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1
pyrus_communis	pycom16g15570
rosa_chinensis	RchiOBHm_Chr0c32g0501471 RchiOBHm_Chr0c32g0501661 RchiOBHm_Chr3g0483801 RchiOBHm_Chr4g0417841
rosa_laevigata	RLG00000007895 RLG00000023259
rosa_multiflora	Rmu_sc0001333.1_g000001
rosa_roxburghii	Rroxscaffold_5G00361250 Rroxscaffold_6G00398130
rosa_rugosa	Rorug04G0149500
rosa_samantha	Rh3AG256800 Rh3CG291600 Rh4AG212000 Rh4BG219000 Rh4CG222700 Rh4DG209800
rosa_wichuraiana	Rw3G023200 Rw4G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	219
AciI	CCGC	1 cut(s)	278
AclI	AACGTT	1 cut(s)	414
AclWI	GGATC	2 cut(s)	86, 288
AcuI	CTGAAG	1 cut(s)	171
AcvI	CACGTG	1 cut(s)	698
AfaI	GTAC	5 cut(s)	148, 230, 301, 351, 657
AfiI	CCNNNNNNNGG	2 cut(s)	476, 481
AgsI	TTSAA	1 cut(s)	791
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AluBI	AGCT	5 cut(s)	32, 206, 330, 399, 761
AluI	AGCT	5 cut(s)	32, 206, 330, 399, 761
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	776
AlwI	GGATC	2 cut(s)	86, 288
AoxI	GGCC	2 cut(s)	472, 942
ApaI	GGGCCC	1 cut(s)	946
ApeKI	GCWGC	4 cut(s)	29, 251, 311, 1037
ArsI	GACNNNNNNTTYG	2 cut(s)	870, 902
Asp700I	GAANNNNTTC	2 cut(s)	414, 897
AspS9I	GGNCC	5 cut(s)	467, 472, 484, 942, 943
AsuC2I	CCSGG	1 cut(s)	471
AsuHPI	GGTGA	2 cut(s)	434, 791
AvaII	GGWCC	2 cut(s)	467, 484
BaeGI	GKGCMC	1 cut(s)	946
BanI	GGYRCC	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	946
BbrPI	CACGTG	1 cut(s)	698
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	4 cut(s)	41, 238, 298, 1024
BccI	CCATC	4 cut(s)	433, 551, 557, 770
BceAI	ACGGC	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	471
BcoDI	GTCTC	1 cut(s)	776
BfmI	CTRYAG	1 cut(s)	331
BisI	GCNGC	4 cut(s)	30, 252, 312, 1038
BlsI	GCNGC	4 cut(s)	31, 253, 313, 1039
Bme1390I	CCNGG	1 cut(s)	471
Bme18I	GGWCC	2 cut(s)	467, 484
BmgT120I	GGNCC	5 cut(s)	467, 472, 484, 942, 943
BmiI	GGNNCC	6 cut(s)	221, 485, 486, 944, 1018, 1131
BmrFI	CCNGG	1 cut(s)	471
BmsI	GCATC	4 cut(s)	43, 298, 682, 1049
BplI	GAGNNNNNCTC	2 cut(s)	115, 147
BpuMI	CCSGG	1 cut(s)	471
BsaAI	YACGTR	1 cut(s)	698
BsaBI	GATNNNNATC	1 cut(s)	966
BsaJI	CCNNGG	1 cut(s)	475
BsaWI	WCCGGW	1 cut(s)	1126
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	2 cut(s)	476, 481
Bse1I	ACTGG	2 cut(s)	238, 590
Bse3DI	GCAATG	1 cut(s)	1008
Bse8I	GATNNNNATC	1 cut(s)	966
BseDI	CCNNGG	1 cut(s)	475
BseGI	GGATG	4 cut(s)	391, 444, 568, 1040
BseJI	GATNNNNATC	1 cut(s)	966
BseLI	CCNNNNNNNGG	2 cut(s)	476, 481
BseMI	GCAATG	1 cut(s)	1008
BseMII	CTCAG	5 cut(s)	48, 59, 273, 330, 962
BseNI	ACTGG	2 cut(s)	238, 590
BseRI	GAGGAG	1 cut(s)	804
BseSI	GKGCMC	1 cut(s)	946
BseXI	GCAGC	4 cut(s)	41, 238, 298, 1024
BshFI	GGCC	2 cut(s)	474, 944
BshNI	GGYRCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	2 cut(s)	470, 1127
BslFI	GGGAC	2 cut(s)	271, 497
BslI	CCNNNNNNNGG	2 cut(s)	476, 481
BsmAI	GTCTC	1 cut(s)	776
BsmFI	GGGAC	2 cut(s)	271, 497
BsmI	GAATGC	1 cut(s)	1100
BsnI	GGCC	2 cut(s)	474, 944
Bsp120I	GGGCCC	1 cut(s)	942
Bsp1286I	GDGCHC	2 cut(s)	241, 946
Bsp1407I	TGTACA	2 cut(s)	299, 655
Bsp143I	GATC	4 cut(s)	91, 280, 345, 592
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	2 cut(s)	474, 944
BspCNI	CTCAG	5 cut(s)	49, 60, 272, 331, 963
BspLI	GGNNCC	6 cut(s)	221, 485, 486, 944, 1018, 1131
BspPI	GGATC	2 cut(s)	86, 288
BspT107I	GGYRCC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	1008
BsrGI	TGTACA	2 cut(s)	299, 655
BsrI	ACTGG	2 cut(s)	238, 590
BssECI	CCNNGG	1 cut(s)	475
BssMI	GATC	4 cut(s)	91, 280, 345, 592
BssT1I	CCWWGG	1 cut(s)	475
Bst4CI	ACNGT	4 cut(s)	335, 377, 534, 787
Bst6I	CTCTTC	1 cut(s)	360
BstAUI	TGTACA	2 cut(s)	299, 655
BstBAI	YACGTR	1 cut(s)	698
BstC8I	GCNNGC	2 cut(s)	525, 1015
BstDEI	CTNAG	7 cut(s)	57, 68, 259, 339, 406, 746, 971
BstF5I	GGATG	4 cut(s)	391, 444, 568, 1040
BstKTI	GATC	4 cut(s)	94, 283, 348, 595
BstMAI	GTCTC	1 cut(s)	776
BstMBI	GATC	4 cut(s)	91, 280, 345, 592
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 1014, 1046
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	469
BstSFI	CTRYAG	1 cut(s)	331
BstSLI	GKGCMC	1 cut(s)	946
BstV1I	GCAGC	4 cut(s)	41, 238, 298, 1024
BstX2I	RGATCY	1 cut(s)	280
BstXI	CCANNNNNNTGG	1 cut(s)	1000
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	474, 944
BtsCI	GGATG	4 cut(s)	391, 444, 568, 1040
BtsIMutI	CAGTG	3 cut(s)	231, 382, 801
Cac8I	GCNNGC	2 cut(s)	525, 1015
Cfr13I	GGNCC	5 cut(s)	467, 472, 484, 942, 943
Csp6I	GTAC	5 cut(s)	147, 229, 300, 350, 656
CviAII	CATG	3 cut(s)	290, 524, 939
CviQI	GTAC	5 cut(s)	147, 229, 300, 350, 656
DdeI	CTNAG	7 cut(s)	57, 68, 259, 339, 406, 746, 971
DpnI	GATC	4 cut(s)	93, 282, 347, 594
DpnII	GATC	4 cut(s)	91, 280, 345, 592
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	475
Eco24I	GRGCYC	1 cut(s)	946
Eco32I	GATATC	1 cut(s)	608
Eco47I	GGWCC	2 cut(s)	467, 484
Eco57I	CTGAAG	1 cut(s)	171
Eco72I	CACGTG	1 cut(s)	698
EcoO109I	RGGNCCY	1 cut(s)	484
EcoRV	GATATC	1 cut(s)	608
EcoT14I	CCWWGG	1 cut(s)	475
EcoT38I	GRGCYC	1 cut(s)	946
ErhI	CCWWGG	1 cut(s)	475
FaeI	CATG	3 cut(s)	293, 527, 942
FaqI	GGGAC	2 cut(s)	271, 497
FatI	CATG	3 cut(s)	289, 523, 938
Fnu4HI	GCNGC	4 cut(s)	30, 252, 312, 1038
FokI	GGATG	4 cut(s)	398, 451, 575, 1027
FriOI	GRGCYC	1 cut(s)	946
Fsp4HI	GCNGC	4 cut(s)	30, 252, 312, 1038
GluI	GCNGC	4 cut(s)	30, 252, 312, 1038
HaeIII	GGCC	2 cut(s)	474, 944
HapII	CCGG	2 cut(s)	470, 1127
Hin1II	CATG	3 cut(s)	293, 527, 942
HincII	GTYRAC	2 cut(s)	916, 1071
HindII	GTYRAC	2 cut(s)	916, 1071
HinfI	GANTC	6 cut(s)	15, 368, 567, 625, 791, 967
HpaI	GTTAAC	1 cut(s)	916
HpaII	CCGG	2 cut(s)	470, 1127
HphI	GGTGA	2 cut(s)	434, 791
Hpy166II	GTNNAC	5 cut(s)	231, 352, 830, 916, 1071
Hpy188I	TCNGA	4 cut(s)	69, 870, 878, 972
Hpy188III	TCNNGA	5 cut(s)	195, 338, 497, 622, 984
Hpy8I	GTNNAC	5 cut(s)	231, 352, 830, 916, 1071
HpyAV	CCTTC	3 cut(s)	474, 845, 1027
HpyCH4III	ACNGT	4 cut(s)	335, 377, 534, 787
HpyCH4IV	ACGT	2 cut(s)	414, 697
HpyCH4V	TGCA	7 cut(s)	4, 527, 695, 719, 1008, 1040, 1114
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 1014, 1046
HpyF3I	CTNAG	7 cut(s)	57, 68, 259, 339, 406, 746, 971
HpySE526I	ACGT	2 cut(s)	414, 697
Hsp92II	CATG	3 cut(s)	293, 527, 942
KflI	GGGWCCC	1 cut(s)	484
KspAI	GTTAAC	1 cut(s)	916
Kzo9I	GATC	4 cut(s)	91, 280, 345, 592
LmnI	GCTCC	5 cut(s)	26, 123, 159, 244, 1022
Lsp1109I	GCAGC	4 cut(s)	41, 238, 298, 1024
LweI	GCATC	4 cut(s)	43, 298, 682, 1049
MaeII	ACGT	2 cut(s)	414, 697
MaeIII	GTNAC	2 cut(s)	736, 955
MalI	GATC	4 cut(s)	93, 282, 347, 594
MboI	GATC	4 cut(s)	91, 280, 345, 592
MboII	GAAGA	6 cut(s)	164, 377, 485, 701, 831, 1116
MfeI	CAATTG	1 cut(s)	546
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	2 cut(s)	241, 946
MluCI	AATT	6 cut(s)	270, 357, 462, 546, 704, 951
MlyI	GAGTC	3 cut(s)	377, 561, 619
MnlI	CCTC	7 cut(s)	40, 190, 382, 776, 825, 1023, 1055
MroXI	GAANNNNTTC	2 cut(s)	414, 897
MseI	TTAA	3 cut(s)	266, 915, 1025
MslI	CAYNNNNRTG	1 cut(s)	1025
MspI	CCGG	2 cut(s)	470, 1127
MspR9I	CCNGG	1 cut(s)	471
MunI	CAATTG	1 cut(s)	546
Mva1269I	GAATGC	1 cut(s)	1100
MwoI	GCNNNNNNNGC	3 cut(s)	260, 1014, 1046
NciI	CCSGG	1 cut(s)	471
NdeII	GATC	4 cut(s)	91, 280, 345, 592
NlaIII	CATG	3 cut(s)	293, 527, 942
NlaIV	GGNNCC	6 cut(s)	221, 485, 486, 944, 1018, 1131
NmuCI	GTSAC	2 cut(s)	736, 955
NspI	RCATGY	1 cut(s)	527
PaeI	GCATGC	1 cut(s)	527
PctI	GAATGC	1 cut(s)	1100
PdmI	GAANNNNTTC	2 cut(s)	414, 897
PfeI	GAWTC	3 cut(s)	15, 791, 967
PkrI	GCNGC	4 cut(s)	31, 253, 313, 1039
PleI	GAGTC	3 cut(s)	376, 561, 619
PmaCI	CACGTG	1 cut(s)	698
PmlI	CACGTG	1 cut(s)	698
PpsI	GAGTC	3 cut(s)	376, 561, 619
Ppu21I	YACGTR	1 cut(s)	698
PpuMI	RGGWCCY	1 cut(s)	484
PsiI	TTATAA	1 cut(s)	323
Psp1406I	AACGTT	1 cut(s)	414
Psp5II	RGGWCCY	1 cut(s)	484
PspCI	CACGTG	1 cut(s)	698
PspN4I	GGNNCC	6 cut(s)	221, 485, 486, 944, 1018, 1131
PspOMI	GGGCCC	1 cut(s)	942
PspPI	GGNCC	5 cut(s)	467, 472, 484, 942, 943
PspPPI	RGGWCCY	1 cut(s)	484
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	5 cut(s)	148, 230, 301, 351, 657
RsaNI	GTAC	5 cut(s)	147, 229, 300, 350, 656
RseI	CAYNNNNRTG	1 cut(s)	1025
SaqAI	TTAA	3 cut(s)	266, 915, 1025
SatI	GCNGC	4 cut(s)	30, 252, 312, 1038
Sau3AI	GATC	4 cut(s)	91, 280, 345, 592
Sau96I	GGNCC	5 cut(s)	467, 472, 484, 942, 943
SchI	GAGTC	3 cut(s)	377, 561, 619
ScrFI	CCNGG	1 cut(s)	471
SduI	GDGCHC	2 cut(s)	241, 946
SetI	ASST	9 cut(s)	34, 208, 332, 401, 417, 700, 763, 768, 1070
SfaNI	GCATC	4 cut(s)	43, 298, 682, 1049
SfcI	CTRYAG	1 cut(s)	331
SinI	GGWCC	2 cut(s)	467, 484
SmiMI	CAYNNNNRTG	1 cut(s)	1025
SphI	GCATGC	1 cut(s)	527
Sse9I	AATT	6 cut(s)	270, 357, 462, 546, 704, 951
SsiI	CCGC	1 cut(s)	278
SspI	AATATT	1 cut(s)	175
StyD4I	CCNGG	1 cut(s)	469
StyI	CCWWGG	1 cut(s)	475
TaaI	ACNGT	4 cut(s)	335, 377, 534, 787
TaiI	ACGT	2 cut(s)	417, 700
TaqI	TCGA	1 cut(s)	817
TasI	AATT	6 cut(s)	270, 357, 462, 546, 704, 951
TatI	WGTACW	4 cut(s)	146, 228, 299, 655
TfiI	GAWTC	3 cut(s)	15, 791, 967
Tru1I	TTAA	3 cut(s)	266, 915, 1025
Tru9I	TTAA	3 cut(s)	266, 915, 1025
TscAI	CASTG	3 cut(s)	238, 382, 801
TseFI	GTSAC	2 cut(s)	736, 955
TseI	GCWGC	4 cut(s)	29, 251, 311, 1037
Tsp45I	GTSAC	2 cut(s)	736, 955
TspDTI	ATGAA	3 cut(s)	654, 702, 927
TspRI	CASTG	3 cut(s)	238, 382, 801
VpaK11BI	GGWCC	2 cut(s)	467, 484
XceI	RCATGY	1 cut(s)	527
XmnI	GAANNNNTTC	2 cut(s)	414, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.