RchiOBHm_Chr1g0316161

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016976
Physical Location & Seq
Forward (+)
3436606 .. 3437499
894 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54662

Sequence Viewer

Length: 342 bp
ATGACACTCATCATTGTGGTTGCCTCCCTTCAATTGAGGTGCACGTTGTGCACGTTGTGGGCGTTCCCTAGGAGGATTTGCGCCTCCACCACGACCCATGGCGCCACCACCACGAGCCATGGCTCCATTATCACGGATAGGGTTGCCACGACCTCCTCTCCCACGTGTGGTGTTGCCACCACGTGTATCCGCTCCAAACTTGCGGTTTCCTTCCTGATTAGGGCGGTTATATGGACCCATACGTCCCTCATGTCCCTTATGCCTAGGGTTCCGCTCCTTGCGCCCTCTTTTGGGTGCATTATAATTCGCCTCATGAACGCTCTTAGTTCCAATGGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.08

Weight (kDa)

10.63

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 302
AasI GACNNNNNNGTC 1 cut(s) 241
AccB1I GGYRCC 1 cut(s) 101
AccBSI CCGCTC 2 cut(s) 192, 274
AciI CCGC 4 cut(s) 190, 203, 224, 272
AcvI CACGTG 2 cut(s) 165, 183
AcyI GRCGYC 1 cut(s) 102
AdeI CACNNNGTG 3 cut(s) 48, 57, 183
AfiI CCNNNNNNNGG 4 cut(s) 167, 220, 290, 291
AflIII ACRYGT 2 cut(s) 164, 182
AgsI TTSAA 1 cut(s) 32
Alw21I GWGCWC 2 cut(s) 44, 53
Alw44I GTGCAC 2 cut(s) 40, 49
AoxI GGCC 1 cut(s) 335
ApaLI GTGCAC 2 cut(s) 40, 49
AspA2I CCTAGG 2 cut(s) 68, 263
AspLEI GCGC 3 cut(s) 83, 104, 283
AspS9I GGNCC 2 cut(s) 234, 335
AvaII GGWCC 1 cut(s) 234
AvrII CCTAGG 2 cut(s) 68, 263
BaeGI GKGCMC 2 cut(s) 44, 53
BanI GGYRCC 1 cut(s) 101
BauI CACGAG 1 cut(s) 112
BbrPI CACGTG 2 cut(s) 165, 183
Bbv12I GWGCWC 2 cut(s) 44, 53
BciVI GTATCC 1 cut(s) 197
BfaI CTAG 2 cut(s) 69, 264
BfoI RGCGCY 1 cut(s) 105
BfuI GTATCC 1 cut(s) 197
BlnI CCTAGG 2 cut(s) 68, 263
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 2 cut(s) 234, 335
BmiI GGNNCC 4 cut(s) 103, 124, 236, 270
BsaAI YACGTR 2 cut(s) 165, 183
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 4 cut(s) 68, 97, 118, 263
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 4 cut(s) 167, 220, 290, 291
BseDI CCNNGG 4 cut(s) 68, 97, 118, 263
BseLI CCNNNNNNNGG 4 cut(s) 167, 220, 290, 291
BseRI GAGGAG 1 cut(s) 145
BseSI GKGCMC 2 cut(s) 44, 53
BshFI GGCC 1 cut(s) 337
BshNI GGYRCC 1 cut(s) 101
BsiHKAI GWGCWC 2 cut(s) 44, 53
BslFI GGGAC 2 cut(s) 229, 238
BslI CCNNNNNNNGG 4 cut(s) 167, 220, 290, 291
BsmFI GGGAC 2 cut(s) 229, 238
BsnI GGCC 1 cut(s) 337
Bsp1286I GDGCHC 2 cut(s) 44, 53
Bsp19I CCATGG 2 cut(s) 97, 118
BspACI CCGC 4 cut(s) 190, 203, 224, 272
BspANI GGCC 1 cut(s) 337
BspHI TCATGA 1 cut(s) 312
BspLI GGNNCC 4 cut(s) 103, 124, 236, 270
BspT107I GGYRCC 1 cut(s) 101
BsrBI CCGCTC 2 cut(s) 192, 274
BssECI CCNNGG 4 cut(s) 68, 97, 118, 263
BssNI GRCGYC 1 cut(s) 102
BssSI CACGAG 1 cut(s) 112
BssT1I CCWWGG 4 cut(s) 68, 97, 118, 263
Bst2BI CACGAG 1 cut(s) 112
BstACI GRCGYC 1 cut(s) 102
BstAPI GCANNNNNTGC 1 cut(s) 48
BstBAI YACGTR 2 cut(s) 165, 183
BstDEI CTNAG 1 cut(s) 323
BstDSI CCRYGG 2 cut(s) 97, 118
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 3 cut(s) 83, 104, 283
BstMWI GCNNNNNNNGC 2 cut(s) 48, 280
BstSLI GKGCMC 2 cut(s) 44, 53
BsuI GTATCC 1 cut(s) 197
BsuRI GGCC 1 cut(s) 337
BtgI CCRYGG 2 cut(s) 97, 118
CciI TCATGA 1 cut(s) 312
CfoI GCGC 3 cut(s) 83, 104, 283
Cfr13I GGNCC 2 cut(s) 234, 335
CviAII CATG 4 cut(s) 98, 119, 250, 313
CviJI RGCY 3 cut(s) 117, 123, 337
CviKI_1 RGCY 3 cut(s) 117, 123, 337
DdeI CTNAG 1 cut(s) 323
DinI GGCGCC 1 cut(s) 103
DraIII CACNNNGTG 3 cut(s) 48, 57, 183
DrdI GACNNNNNNGTC 1 cut(s) 241
DseDI GACNNNNNNGTC 1 cut(s) 241
Eco130I CCWWGG 4 cut(s) 68, 97, 118, 263
Eco47I GGWCC 1 cut(s) 234
Eco72I CACGTG 2 cut(s) 165, 183
EcoT14I CCWWGG 4 cut(s) 68, 97, 118, 263
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
ErhI CCWWGG 4 cut(s) 68, 97, 118, 263
FaeI CATG 4 cut(s) 101, 122, 253, 316
FaiI YATR 9 cut(s) 99, 120, 230, 232, 240, 251, 260, 302, 314
FaqI GGGAC 2 cut(s) 229, 238
FatI CATG 4 cut(s) 97, 118, 249, 312
FspBI CTAG 2 cut(s) 69, 264
GlaI GCGC 3 cut(s) 82, 103, 282
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 1 cut(s) 337
HhaI GCGC 3 cut(s) 83, 104, 283
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 4 cut(s) 101, 122, 253, 316
Hin6I GCGC 3 cut(s) 81, 102, 281
HinP1I GCGC 3 cut(s) 81, 102, 281
Hpy166II GTNNAC 2 cut(s) 42, 51
Hpy188III TCNNGA 2 cut(s) 214, 313
Hpy8I GTNNAC 2 cut(s) 42, 51
HpyAV CCTTC 2 cut(s) 38, 220
HpyCH4IV ACGT 5 cut(s) 44, 53, 164, 182, 242
HpyCH4V TGCA 3 cut(s) 42, 51, 297
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 280
HpyF3I CTNAG 1 cut(s) 323
HpySE526I ACGT 5 cut(s) 44, 53, 164, 182, 242
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 4 cut(s) 101, 122, 253, 316
HspAI GCGC 3 cut(s) 81, 102, 281
KasI GGCGCC 1 cut(s) 101
LmnI GCTCC 3 cut(s) 128, 197, 279
LpnPI CCDG 1 cut(s) 227
MaeI CTAG 2 cut(s) 69, 264
MaeII ACGT 5 cut(s) 44, 53, 164, 182, 242
MbiI CCGCTC 2 cut(s) 192, 274
MfeI CAATTG 1 cut(s) 32
MhlI GDGCHC 2 cut(s) 44, 53
MluCI AATT 2 cut(s) 32, 303
Mly113I GGCGCC 1 cut(s) 102
MnlI CCTC 9 cut(s) 30, 34, 66, 94, 163, 166, 257, 295, 320
MslI CAYNNNNRTG 1 cut(s) 14
MunI CAATTG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 48, 280
NarI GGCGCC 1 cut(s) 102
NcoI CCATGG 2 cut(s) 97, 118
NlaIII CATG 4 cut(s) 101, 122, 253, 316
NlaIV GGNNCC 4 cut(s) 103, 124, 236, 270
PagI TCATGA 1 cut(s) 312
PcsI WCGNNNNNNNCGW 2 cut(s) 50, 59
PluTI GGCGCC 1 cut(s) 105
PmaCI CACGTG 2 cut(s) 165, 183
PmlI CACGTG 2 cut(s) 165, 183
Ppu21I YACGTR 2 cut(s) 165, 183
PsiI TTATAA 1 cut(s) 302
PspCI CACGTG 2 cut(s) 165, 183
PspN4I GGNNCC 4 cut(s) 103, 124, 236, 270
PspPI GGNCC 2 cut(s) 234, 335
RseI CAYNNNNRTG 1 cut(s) 14
Sau96I GGNCC 2 cut(s) 234, 335
SduI GDGCHC 2 cut(s) 44, 53
SetI ASST 7 cut(s) 41, 47, 56, 155, 167, 185, 245
SfoI GGCGCC 1 cut(s) 103
SinI GGWCC 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 2 cut(s) 32, 303
SsiI CCGC 4 cut(s) 190, 203, 224, 272
SspDI GGCGCC 1 cut(s) 101
SspMI CTAG 2 cut(s) 69, 264
StyI CCWWGG 4 cut(s) 68, 97, 118, 263
TaiI ACGT 5 cut(s) 47, 56, 167, 185, 245
TasI AATT 2 cut(s) 32, 303
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 1 cut(s) 149
VneI GTGCAC 2 cut(s) 40, 49
VpaK11BI GGWCC 1 cut(s) 234
XmaJI CCTAGG 2 cut(s) 68, 263
XspI CTAG 2 cut(s) 69, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.