RchiOBHm_Chr3g0451461

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016976
Physical Location & Seq
Forward (+)
2519506 .. 2520093
588 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41872

Sequence Viewer

Length: 354 bp
ATGACACACGTCATTGTGGTTGACTTTCTTTATTTGAGGTGCACGTTGTGGATATTCCCTAGGCGGGTTGTTGCTGCTACTTCCACGGCGTATTATGCGACCTCCACGGCCCAAAGTGTTACGGCCCATGGTGTTGTTATATTCTCCTCTCCCACGTGTGGATTTGCCACCACGTGTGCCCGCTCCAAAGTTGCGGTTTCCTTCCTTATTGGGGCGGTTGTATGGACCCATGCGTCCGTCATGTCCCTTGTTAGGGTATACATGCCCCTTATTAGTAGGGTACCGCTCCTTGCGCCCTTTCTTGGGTGCATTATAATTCGCCTCACGAACGCTTTTGGTTCCTACGGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.68

Weight (kDa)

9.84

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 314
AasI GACNNNNNNGTC 1 cut(s) 232
Acc65I GGTACC 1 cut(s) 280
AccB1I GGYRCC 1 cut(s) 280
AccBSI CCGCTC 2 cut(s) 183, 286
AccI GTMKAC 1 cut(s) 258
AciI CCGC 5 cut(s) 64, 181, 194, 215, 284
AcvI CACGTG 2 cut(s) 156, 174
AdeI CACNNNGTG 2 cut(s) 48, 174
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 7 cut(s) 64, 158, 211, 252, 253, 302, 303
AflIII ACRYGT 3 cut(s) 7, 155, 173
AjiI CACGTC 1 cut(s) 10
Alw21I GWGCWC 1 cut(s) 44
Alw44I GTGCAC 1 cut(s) 40
AoxI GGCC 3 cut(s) 108, 123, 347
ApaLI GTGCAC 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 74
Asp718I GGTACC 1 cut(s) 280
AspA2I CCTAGG 1 cut(s) 59
AspLEI GCGC 1 cut(s) 295
AspS9I GGNCC 4 cut(s) 109, 124, 225, 347
AvaII GGWCC 1 cut(s) 225
AvrII CCTAGG 1 cut(s) 59
BaeGI GKGCMC 2 cut(s) 44, 181
BanI GGYRCC 1 cut(s) 280
BbrPI CACGTG 2 cut(s) 156, 174
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 61
BceAI ACGGC 3 cut(s) 102, 123, 138
BfaI CTAG 1 cut(s) 60
BisI GCNGC 1 cut(s) 75
BlnI CCTAGG 1 cut(s) 59
BlsI GCNGC 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 225
BmgBI CACGTC 1 cut(s) 10
BmgT120I GGNCC 4 cut(s) 109, 124, 225, 347
BmiI GGNNCC 3 cut(s) 227, 282, 340
BoxI GACNNNNGTC 1 cut(s) 8
BsaAI YACGTR 2 cut(s) 156, 174
BsaJI CCNNGG 4 cut(s) 59, 84, 105, 127
Bsc4I CCNNNNNNNGG 7 cut(s) 64, 158, 211, 252, 253, 302, 303
BseDI CCNNGG 4 cut(s) 59, 84, 105, 127
BseLI CCNNNNNNNGG 7 cut(s) 64, 158, 211, 252, 253, 302, 303
BseRI GAGGAG 1 cut(s) 136
BseSI GKGCMC 2 cut(s) 44, 181
BseXI GCAGC 1 cut(s) 61
BshFI GGCC 3 cut(s) 110, 125, 349
BshNI GGYRCC 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 44
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 7 cut(s) 64, 158, 211, 252, 253, 302, 303
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 3 cut(s) 110, 125, 349
Bsp1286I GDGCHC 2 cut(s) 44, 181
Bsp19I CCATGG 1 cut(s) 127
BspACI CCGC 5 cut(s) 64, 181, 194, 215, 284
BspANI GGCC 3 cut(s) 110, 125, 349
BspLI GGNNCC 3 cut(s) 227, 282, 340
BspT107I GGYRCC 1 cut(s) 280
BsrBI CCGCTC 2 cut(s) 183, 286
BssECI CCNNGG 4 cut(s) 59, 84, 105, 127
BssNAI GTATAC 1 cut(s) 259
BssT1I CCWWGG 2 cut(s) 59, 127
Bst1107I GTATAC 1 cut(s) 259
BstBAI YACGTR 2 cut(s) 156, 174
BstC8I GCNNGC 1 cut(s) 181
BstDSI CCRYGG 3 cut(s) 84, 105, 127
BstHHI GCGC 1 cut(s) 295
BstMWI GCNNNNNNNGC 2 cut(s) 95, 292
BstNSI RCATGY 1 cut(s) 265
BstPAI GACNNNNGTC 1 cut(s) 8
BstSLI GKGCMC 2 cut(s) 44, 181
BstV1I GCAGC 1 cut(s) 61
BstZ17I GTATAC 1 cut(s) 259
BsuRI GGCC 3 cut(s) 110, 125, 349
BtgI CCRYGG 3 cut(s) 84, 105, 127
BtrI CACGTC 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 181
CfoI GCGC 1 cut(s) 295
Cfr13I GGNCC 4 cut(s) 109, 124, 225, 347
CseI GACGC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 281
CviAII CATG 4 cut(s) 128, 230, 241, 262
CviJI RGCY 3 cut(s) 110, 125, 349
CviKI_1 RGCY 3 cut(s) 110, 125, 349
CviQI GTAC 1 cut(s) 281
DraIII CACNNNGTG 2 cut(s) 48, 174
DrdI GACNNNNNNGTC 1 cut(s) 232
DseDI GACNNNNNNGTC 1 cut(s) 232
Eco130I CCWWGG 2 cut(s) 59, 127
Eco47I GGWCC 1 cut(s) 225
Eco72I CACGTG 2 cut(s) 156, 174
EcoT14I CCWWGG 2 cut(s) 59, 127
ErhI CCWWGG 2 cut(s) 59, 127
FaeI CATG 4 cut(s) 131, 233, 244, 265
FaiI YATR 9 cut(s) 96, 129, 140, 223, 231, 242, 259, 263, 314
FaqI GGGAC 1 cut(s) 229
FatI CATG 4 cut(s) 127, 229, 240, 261
FauI CCCGC 2 cut(s) 57, 188
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 60
GlaI GCGC 1 cut(s) 294
GluI GCNGC 1 cut(s) 75
HaeIII GGCC 3 cut(s) 110, 125, 349
HgaI GACGC 1 cut(s) 222
HhaI GCGC 1 cut(s) 295
Hin1II CATG 4 cut(s) 131, 233, 244, 265
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
Hpy166II GTNNAC 3 cut(s) 22, 42, 259
Hpy188III TCNNGA 1 cut(s) 325
Hpy8I GTNNAC 3 cut(s) 22, 42, 259
HpyAV CCTTC 1 cut(s) 211
HpyCH4IV ACGT 4 cut(s) 9, 44, 155, 173
HpyCH4V TGCA 2 cut(s) 42, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 292
HpySE526I ACGT 4 cut(s) 9, 44, 155, 173
Hsp92II CATG 4 cut(s) 131, 233, 244, 265
HspAI GCGC 1 cut(s) 293
KpnI GGTACC 1 cut(s) 284
LmnI GCTCC 2 cut(s) 188, 291
Lsp1109I GCAGC 1 cut(s) 61
MaeI CTAG 1 cut(s) 60
MaeII ACGT 4 cut(s) 9, 44, 155, 173
MaeIII GTNAC 1 cut(s) 118
MbiI CCGCTC 2 cut(s) 183, 286
MhlI GDGCHC 2 cut(s) 44, 181
MluCI AATT 1 cut(s) 315
MnlI CCTC 4 cut(s) 30, 112, 157, 332
MwoI GCNNNNNNNGC 2 cut(s) 95, 292
NcoI CCATGG 1 cut(s) 127
NlaIII CATG 4 cut(s) 131, 233, 244, 265
NlaIV GGNNCC 3 cut(s) 227, 282, 340
NspI RCATGY 1 cut(s) 265
PkrI GCNGC 1 cut(s) 76
PmaCI CACGTG 2 cut(s) 156, 174
PmlI CACGTG 2 cut(s) 156, 174
Ppu21I YACGTR 2 cut(s) 156, 174
PshAI GACNNNNGTC 1 cut(s) 8
PsiI TTATAA 1 cut(s) 314
PspCI CACGTG 2 cut(s) 156, 174
PspN4I GGNNCC 3 cut(s) 227, 282, 340
PspPI GGNCC 4 cut(s) 109, 124, 225, 347
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
SatI GCNGC 1 cut(s) 75
Sau96I GGNCC 4 cut(s) 109, 124, 225, 347
SduI GDGCHC 2 cut(s) 44, 181
SetI ASST 6 cut(s) 12, 41, 47, 104, 158, 176
SinI GGWCC 1 cut(s) 225
Sse9I AATT 1 cut(s) 315
SsiI CCGC 5 cut(s) 64, 181, 194, 215, 284
SspMI CTAG 1 cut(s) 60
StyI CCWWGG 2 cut(s) 59, 127
TaiI ACGT 4 cut(s) 12, 47, 158, 176
TasI AATT 1 cut(s) 315
TseI GCWGC 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 226
VneI GTGCAC 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 225
XceI RCATGY 1 cut(s) 265
XmaJI CCTAGG 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 258
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.