Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016976

Physical Location & Seq

Genomic Coordinates Reverse (-)

38291590 .. 38292374

Gene Structure 785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38438

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGACACACGTCATTATGGTTGCCTCCTTTCATTGGAGGTGCAGTTTGTCCACGTTGTGGATATTCCCTAGGAGGGTTACTGCTACTACCACGTCTTATGATGCGACCTCCACGGCCCTTATTGTTATCGTATCCACCTCTCCCACGTGTGGAGTTGCCACCACGTGTGAAGCCACCACGTGTGGAGTTACCACCACGTGTGTCCGCTTTAAAGTTGCGGTTTCTCTCTTTATTGGAGTGGTTATATGGGCCCGTACGCCTTTCATGTCCCCTGTTATTAGGGTATTGCTGCTTGCGCCCTCTTTTGGGTGCATTATAATTTGCCTCACGGACGCTCTTGGTTCCGATGGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

12.6

Weight (kDa)

8.59

Isoelectric Point (pI)

31.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016976)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0316161 RchiOBHm_Chr1g0364491 RchiOBHm_Chr1g0376361 RchiOBHm_Chr2g0132411 RchiOBHm_Chr2g0156051 RchiOBHm_Chr2g0170051 RchiOBHm_Chr3g0451461 RchiOBHm_Chr3g0491571 RchiOBHm_Chr4g0405061 RchiOBHm_Chr4g0413921 RchiOBHm_Chr5g0045561 RchiOBHm_Chr6g0263491
rosa_rugosa	Rorug05G0309300
rosa_samantha	Rh6DG245300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	317
AccB7I	CCANNNNNTGG	1 cut(s)	57
AciI	CCGC	2 cut(s)	205, 218
AcvI	CACGTG	4 cut(s)	147, 165, 180, 198
AdeI	CACNNNGTG	4 cut(s)	57, 165, 180, 198
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	6 cut(s)	33, 57, 73, 149, 305, 306
AflIII	ACRYGT	5 cut(s)	7, 146, 164, 179, 197
AjiI	CACGTC	2 cut(s)	10, 93
AoxI	GGCC	3 cut(s)	114, 249, 350
ApaI	GGGCCC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	289
AspA2I	CCTAGG	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	4 cut(s)	115, 249, 250, 350
AvrII	CCTAGG	1 cut(s)	68
BaeGI	GKGCMC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	253
BbrPI	CACGTG	4 cut(s)	147, 165, 180, 198
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	1 cut(s)	341
BceAI	ACGGC	1 cut(s)	129
BciVI	GTATCC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	69
BfuI	GTATCC	1 cut(s)	142
BisI	GCNGC	1 cut(s)	290
BlnI	CCTAGG	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	291
BmgBI	CACGTC	2 cut(s)	10, 93
BmgT120I	GGNCC	4 cut(s)	115, 249, 250, 350
BmiI	GGNNCC	2 cut(s)	251, 343
BmsI	GCATC	1 cut(s)	91
BoxI	GACNNNNGTC	1 cut(s)	8
BsaAI	YACGTR	4 cut(s)	147, 165, 180, 198
BsaJI	CCNNGG	2 cut(s)	68, 111
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 58
Bsc4I	CCNNNNNNNGG	6 cut(s)	33, 57, 73, 149, 305, 306
BseDI	CCNNGG	2 cut(s)	68, 111
BseLI	CCNNNNNNNGG	6 cut(s)	33, 57, 73, 149, 305, 306
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	276
BsgI	GTGCAG	1 cut(s)	61
BshFI	GGCC	3 cut(s)	116, 251, 352
BsiWI	CGTACG	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	6 cut(s)	33, 57, 73, 149, 305, 306
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	3 cut(s)	116, 251, 352
Bsp120I	GGGCCC	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	253
BspACI	CCGC	2 cut(s)	205, 218
BspANI	GGCC	3 cut(s)	116, 251, 352
BspLI	GGNNCC	2 cut(s)	251, 343
BssECI	CCNNGG	2 cut(s)	68, 111
BssT1I	CCWWGG	1 cut(s)	68
BstBAI	YACGTR	4 cut(s)	147, 165, 180, 198
BstC8I	GCNNGC	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSLI	GKGCMC	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	3 cut(s)	116, 251, 352
BtgI	CCRYGG	1 cut(s)	111
BtrI	CACGTC	2 cut(s)	10, 93
Cac8I	GCNNGC	1 cut(s)	294
CfoI	GCGC	1 cut(s)	298
Cfr13I	GGNCC	4 cut(s)	115, 249, 250, 350
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	4 cut(s)	116, 173, 251, 352
CviKI_1	RGCY	4 cut(s)	116, 173, 251, 352
CviQI	GTAC	1 cut(s)	255
DraI	TTTAAA	1 cut(s)	211
DraIII	CACNNNGTG	4 cut(s)	57, 165, 180, 198
Eco130I	CCWWGG	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	253
Eco72I	CACGTG	4 cut(s)	147, 165, 180, 198
EcoT14I	CCWWGG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	1 cut(s)	268
FaiI	YATR	6 cut(s)	17, 99, 245, 247, 266, 317
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	253
Fsp4HI	GCNGC	1 cut(s)	290
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	1 cut(s)	290
HaeIII	GGCC	3 cut(s)	116, 251, 352
HgaI	GACGC	1 cut(s)	341
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	1 cut(s)	346
Hpy8I	GTNNAC	1 cut(s)	51
HpyCH4IV	ACGT	7 cut(s)	9, 53, 92, 146, 164, 179, 197
HpyCH4V	TGCA	2 cut(s)	42, 312
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpySE526I	ACGT	7 cut(s)	9, 53, 92, 146, 164, 179, 197
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	1 cut(s)	296
LpnPI	CCDG	1 cut(s)	285
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	7 cut(s)	9, 53, 92, 146, 164, 179, 197
MaeIII	GTNAC	2 cut(s)	76, 187
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	1 cut(s)	318
MnlI	CCTC	7 cut(s)	30, 34, 66, 118, 148, 310, 335
MseI	TTAA	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	295
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	2 cut(s)	251, 343
Pfl23II	CGTACG	1 cut(s)	254
PflMI	CCANNNNNTGG	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	291
PmaCI	CACGTG	4 cut(s)	147, 165, 180, 198
PmlI	CACGTG	4 cut(s)	147, 165, 180, 198
Ppu21I	YACGTR	4 cut(s)	147, 165, 180, 198
PshAI	GACNNNNGTC	1 cut(s)	8
PsiI	TTATAA	1 cut(s)	317
PspCI	CACGTG	4 cut(s)	147, 165, 180, 198
PspLI	CGTACG	1 cut(s)	254
PspN4I	GGNNCC	2 cut(s)	251, 343
PspOMI	GGGCCC	1 cut(s)	249
PspPI	GGNCC	4 cut(s)	115, 249, 250, 350
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	1 cut(s)	290
Sau96I	GGNCC	4 cut(s)	115, 249, 250, 350
SduI	GDGCHC	1 cut(s)	253
SfaNI	GCATC	1 cut(s)	91
Sse9I	AATT	1 cut(s)	318
SsiI	CCGC	2 cut(s)	205, 218
SspMI	CTAG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	68
TaiI	ACGT	7 cut(s)	12, 56, 95, 149, 167, 182, 200
TasI	AATT	1 cut(s)	318
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TseI	GCWGC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	20, 253
TspGWI	ACGGA	1 cut(s)	344
Van91I	CCANNNNNTGG	1 cut(s)	57
XmaJI	CCTAGG	1 cut(s)	68
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.