Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016976

Physical Location & Seq

Genomic Coordinates Forward (+)

72816546 .. 72817172

Gene Structure 627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52489

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGTCTATTTCCACGGATCTCGAATTATAGTTCTTCACAAGGATGTTGTCATGCTTTTCAGCGTCATTCATAGCTCCAATGAGCTCATGAAACCTTGTGATCCGTCCTGTAGCAATATCGATTCGATAGTTCTTAGCAACAATCAATGCAGAGACGGGGAAGGTACAGAGAGTCTTCTCAATCAACGACAGTATGGGAGATGTTTGGGTTCTGCGGATGATGCTTACCGGGCTTTTTGTGAGATCAAGTTTAGAAATCTAGTGTCTTGGAATTCTATTATTTCGGTTTACTGCCAAAGAGGGGATGCAGTGTTTGCTTATAAGCTTTTCTCAAACATGCAGAAGGATGGTCAAATGCCGAGCAGGGTCAGCAAAGCTGGATTTTTACAGGATTTGTACGTAGGAAGTGCTTTGGTTAGTGGATTGGCTAGGGTTGGATTAGTTGATTACGCTAGGAAGATTTTTGAGCAGATGGGTGAGAGGAATGTAGTTTTGATGAATGGGTTGATGGTTGGACTGGTGAGGCAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

177

Amino Acids

19.85

Weight (kDa)

8.76

Isoelectric Point (pI)

26.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	86 - 123	2.5e-08	PPR repeat family
PPR	PF01535	88 - 117	3.9e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016976)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0316161 RchiOBHm_Chr1g0364491 RchiOBHm_Chr1g0376361 RchiOBHm_Chr2g0132411 RchiOBHm_Chr2g0156051 RchiOBHm_Chr2g0170051 RchiOBHm_Chr3g0451461 RchiOBHm_Chr3g0491571 RchiOBHm_Chr4g0405061 RchiOBHm_Chr4g0413921 RchiOBHm_Chr5g0045561 RchiOBHm_Chr6g0263491
rosa_rugosa	Rorug05G0309300
rosa_samantha	Rh6DG245300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	321
AciI	CCGC	1 cut(s)	215
AclWI	GGATC	2 cut(s)	25, 95
AcsI	RAATTY	1 cut(s)	271
AfaI	GTAC	2 cut(s)	166, 398
AfiI	CCNNNNNNNGG	1 cut(s)	301
AluBI	AGCT	4 cut(s)	75, 85, 325, 377
AluI	AGCT	4 cut(s)	75, 85, 325, 377
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	2 cut(s)	25, 95
ApoI	RAATTY	1 cut(s)	271
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	488, 532
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	87
BccI	CCATC	3 cut(s)	341, 466, 502
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	3 cut(s)	260, 429, 453
BfmI	CTRYAG	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	2 cut(s)	211, 295
BpiI	GAAGAC	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	230
Bsa29I	ATCGAT	1 cut(s)	120
BsaAI	YACGTR	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	522
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	4 cut(s)	49, 223, 310, 352
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseNI	ACTGG	1 cut(s)	522
BshVI	ATCGAT	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	147
BsmBI	CGTCTC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	3 cut(s)	17, 100, 243
BspACI	CCGC	1 cut(s)	215
BspDI	ATCGAT	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	87
BspPI	GGATC	2 cut(s)	25, 95
BsrI	ACTGG	1 cut(s)	522
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	3 cut(s)	17, 100, 243
Bst4CI	ACNGT	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstBAI	YACGTR	1 cut(s)	400
BstDEI	CTNAG	1 cut(s)	134
BstDSI	CCRYGG	1 cut(s)	13
BstF5I	GGATG	4 cut(s)	49, 223, 310, 352
BstKTI	GATC	3 cut(s)	20, 103, 246
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	3 cut(s)	17, 100, 243
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 230, 314, 369
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	1 cut(s)	109
BstSNI	TACGTA	1 cut(s)	400
BstV2I	GAAGAC	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
Bsu15I	ATCGAT	1 cut(s)	120
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	13
BtsCI	GGATG	4 cut(s)	49, 223, 310, 352
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	315
CciI	TCATGA	1 cut(s)	87
ClaI	ATCGAT	1 cut(s)	120
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	165, 397
CviAII	CATG	3 cut(s)	52, 88, 337
CviJI	RGCY	6 cut(s)	75, 85, 233, 325, 377, 428
CviKI_1	RGCY	6 cut(s)	75, 85, 233, 325, 377, 428
CviQI	GTAC	2 cut(s)	165, 397
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	3 cut(s)	19, 102, 245
DpnII	GATC	3 cut(s)	17, 100, 243
Ecl136II	GAGCTC	1 cut(s)	85
Eco105I	TACGTA	1 cut(s)	400
Eco24I	GRGCYC	1 cut(s)	87
Eco53kI	GAGCTC	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	85
EcoRI	GAATTC	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	3 cut(s)	55, 91, 340
FaiI	YATR	7 cut(s)	29, 53, 72, 89, 195, 321, 338
FatI	CATG	3 cut(s)	51, 87, 336
FokI	GGATG	4 cut(s)	56, 230, 317, 359
FriOI	GRGCYC	1 cut(s)	87
FspBI	CTAG	3 cut(s)	260, 429, 453
HapII	CCGG	1 cut(s)	229
HgaI	GACGC	1 cut(s)	52
Hin1II	CATG	3 cut(s)	55, 91, 340
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	2 cut(s)	122, 172
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	2 cut(s)	488, 532
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188III	TCNNGA	2 cut(s)	21, 88
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	2 cut(s)	155, 337
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	3 cut(s)	150, 308, 340
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 230, 314, 369
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	3 cut(s)	55, 91, 340
Kzo9I	GATC	3 cut(s)	17, 100, 243
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	6 cut(s)	121, 242, 349, 363, 374, 503
LweI	GCATC	2 cut(s)	211, 295
MaeI	CTAG	3 cut(s)	260, 429, 453
MaeII	ACGT	1 cut(s)	399
MalI	GATC	3 cut(s)	19, 102, 245
MboI	GATC	3 cut(s)	17, 100, 243
MboII	GAAGA	3 cut(s)	26, 167, 469
MflI	RGATCY	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	2 cut(s)	24, 271
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	2 cut(s)	415, 493
MnlI	CCTC	3 cut(s)	293, 474, 516
MslI	CAYNNNNRTG	1 cut(s)	42
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	4 cut(s)	221, 230, 314, 369
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	3 cut(s)	17, 100, 243
NlaIII	CATG	3 cut(s)	55, 91, 340
NmeAIII	GCCGAG	1 cut(s)	384
NspI	RCATGY	1 cut(s)	340
PagI	TCATGA	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	122
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
Ppu21I	YACGTR	1 cut(s)	400
PsiI	TTATAA	1 cut(s)	321
Psp124BI	GAGCTC	1 cut(s)	87
PsuI	RGATCY	1 cut(s)	17
RsaI	GTAC	2 cut(s)	166, 398
RsaNI	GTAC	2 cut(s)	165, 397
RseI	CAYNNNNRTG	1 cut(s)	42
SacI	GAGCTC	1 cut(s)	87
Sau3AI	GATC	3 cut(s)	17, 100, 243
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	7 cut(s)	77, 87, 97, 166, 327, 379, 402
SfaNI	GCATC	2 cut(s)	211, 295
SfcI	CTRYAG	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	42
SnaBI	TACGTA	1 cut(s)	400
Sse9I	AATT	2 cut(s)	24, 271
SsiI	CCGC	1 cut(s)	215
SspMI	CTAG	3 cut(s)	260, 429, 453
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	3 cut(s)	22, 120, 125
TasI	AATT	2 cut(s)	24, 271
TfiI	GAWTC	1 cut(s)	122
TscAI	CASTG	1 cut(s)	315
TspDTI	ATGAA	3 cut(s)	59, 104, 512
TspGWI	ACGGA	2 cut(s)	30, 93
TspRI	CASTG	1 cut(s)	315
XapI	RAATTY	1 cut(s)	271
XceI	RCATGY	1 cut(s)	340
XspI	CTAG	3 cut(s)	260, 429, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.