RchiOBHm_Chr2g0132411

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016976
Physical Location & Seq
Reverse (-)
48916909 .. 48917372
464 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50368

Sequence Viewer

Length: 444 bp
ATGGCTCTTAGTGTTGGTGGCGCCACCAACATGGCCAGAGGCATTGCCTCCCTCTCTCTTTCCACGTTTACCTCTTCGGTTCCGTGTTCGCCTATTTTGGCTGTTACCTTCCCAAGTAGAGCAATTATATGGATCAGAATGTCCAGAAGTATACCTAAGATTAGGGTTTTGCTCTTGGCGCCCTCTCTTAGAGGTGCGACTATAATTGGATTCCGGAATATGCTCTGTTTCCACGGATCTCGAATTATAGTTCTTCACAAGGATATTGTCATGCTTTTCAGCGACATTTATAGCTCCAATGAGCTCATGAAACCTTGTGATCCGTCTTGCATTTACATCGATTCGATAGTTCTTAGCAACCATCAATGCAGAGATGGGGAAGGTAGAGAGAGTCTTCTCAATCAACATCGCATCTGTGATCTCTTTACCACAGAATTCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.28

Weight (kDa)

8.9

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 20, 178
AccI GTMKAC 1 cut(s) 151
AccIII TCCGGA 1 cut(s) 213
AclWI GGATC 3 cut(s) 140, 244, 314
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 1 cut(s) 434
AcyI GRCGYC 2 cut(s) 21, 179
AluBI AGCT 2 cut(s) 294, 304
AluI AGCT 2 cut(s) 294, 304
Alw21I GWGCWC 1 cut(s) 306
AlwI GGATC 3 cut(s) 140, 244, 314
Aor13HI TCCGGA 1 cut(s) 213
AoxI GGCC 1 cut(s) 33
ApoI RAATTY 1 cut(s) 434
AspLEI GCGC 2 cut(s) 23, 181
BalI TGGCCA 1 cut(s) 35
BanI GGYRCC 2 cut(s) 20, 178
BanII GRGCYC 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 386
Bbv12I GWGCWC 1 cut(s) 306
BccI CCATC 2 cut(s) 368, 369
BcgI CGANNNNNNTGC 2 cut(s) 319, 353
BfoI RGCGCY 2 cut(s) 24, 182
BmiI GGNNCC 3 cut(s) 22, 81, 180
BmsI GCATC 1 cut(s) 420
BpiI GAAGAC 1 cut(s) 386
Bsa29I ATCGAT 1 cut(s) 339
BsaHI GRCGYC 2 cut(s) 21, 179
BsaJI CCNNGG 1 cut(s) 232
BsaWI WCCGGW 1 cut(s) 213
Bse3DI GCAATG 1 cut(s) 42
BseAI TCCGGA 1 cut(s) 213
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 1 cut(s) 232
BseMI GCAATG 1 cut(s) 42
BshFI GGCC 1 cut(s) 35
BshNI GGYRCC 2 cut(s) 20, 178
BshVI ATCGAT 1 cut(s) 339
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 1 cut(s) 214
BsnI GGCC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 306
Bsp13I TCCGGA 1 cut(s) 213
Bsp143I GATC 4 cut(s) 132, 236, 319, 418
BspANI GGCC 1 cut(s) 35
BspDI ATCGAT 1 cut(s) 339
BspEI TCCGGA 1 cut(s) 213
BspHI TCATGA 1 cut(s) 306
BspLI GGNNCC 3 cut(s) 22, 81, 180
BspPI GGATC 3 cut(s) 140, 244, 314
BspT107I GGYRCC 2 cut(s) 20, 178
BsrDI GCAATG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 4 cut(s) 132, 236, 319, 418
BssNAI GTATAC 1 cut(s) 152
BssNI GRCGYC 2 cut(s) 21, 179
Bst1107I GTATAC 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 79
BstACI GRCGYC 2 cut(s) 21, 179
BstDEI CTNAG 4 cut(s) 8, 156, 188, 353
BstDSI CCRYGG 1 cut(s) 232
BstH2I RGCGCY 2 cut(s) 24, 182
BstHHI GCGC 2 cut(s) 23, 181
BstKTI GATC 4 cut(s) 135, 239, 322, 421
BstMBI GATC 4 cut(s) 132, 236, 319, 418
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 386
BstX2I RGATCY 1 cut(s) 236
BstXI CCANNNNNNTGG 1 cut(s) 31
BstYI RGATCY 1 cut(s) 236
BstZ17I GTATAC 1 cut(s) 152
Bsu15I ATCGAT 1 cut(s) 339
BsuRI GGCC 1 cut(s) 35
BsuTUI ATCGAT 1 cut(s) 339
BtgI CCRYGG 1 cut(s) 232
BtgZI GCGATG 1 cut(s) 392
CciI TCATGA 1 cut(s) 306
CfoI GCGC 2 cut(s) 23, 181
ClaI ATCGAT 1 cut(s) 339
CviAII CATG 3 cut(s) 31, 271, 307
CviJI RGCY 5 cut(s) 5, 35, 101, 294, 304
CviKI_1 RGCY 5 cut(s) 5, 35, 101, 294, 304
DdeI CTNAG 4 cut(s) 8, 156, 188, 353
DinI GGCGCC 2 cut(s) 22, 180
DpnI GATC 4 cut(s) 134, 238, 321, 420
DpnII GATC 4 cut(s) 132, 236, 319, 418
EaeI YGGCCR 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Ecl136II GAGCTC 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 306
Eco53kI GAGCTC 1 cut(s) 304
EcoICRI GAGCTC 1 cut(s) 304
EcoRI GAATTC 1 cut(s) 434
EcoT38I GRGCYC 1 cut(s) 306
EgeI GGCGCC 2 cut(s) 22, 180
EheI GGCGCC 2 cut(s) 22, 180
FaeI CATG 3 cut(s) 34, 274, 310
FatI CATG 3 cut(s) 30, 270, 306
FblI GTMKAC 1 cut(s) 151
FriOI GRGCYC 1 cut(s) 306
GlaI GCGC 2 cut(s) 22, 180
HaeII RGCGCY 2 cut(s) 24, 182
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 214
HhaI GCGC 2 cut(s) 23, 181
Hin1I GRCGYC 2 cut(s) 21, 179
Hin1II CATG 3 cut(s) 34, 274, 310
Hin6I GCGC 2 cut(s) 21, 179
HinP1I GCGC 2 cut(s) 21, 179
HinfI GANTC 3 cut(s) 210, 341, 391
HpaII CCGG 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 69, 152
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 4 cut(s) 144, 214, 240, 307
Hpy8I GTNNAC 2 cut(s) 69, 152
HpyAV CCTTC 2 cut(s) 118, 374
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 2 cut(s) 330, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 4 cut(s) 8, 156, 188, 353
HpySE526I ACGT 1 cut(s) 65
Hsp92I GRCGYC 2 cut(s) 21, 179
Hsp92II CATG 3 cut(s) 34, 274, 310
HspAI GCGC 2 cut(s) 21, 179
KasI GGCGCC 2 cut(s) 20, 178
Kpn2I TCCGGA 1 cut(s) 213
Kzo9I GATC 4 cut(s) 132, 236, 319, 418
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 3 cut(s) 49, 157, 227
LweI GCATC 1 cut(s) 420
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 103
MalI GATC 4 cut(s) 134, 238, 321, 420
MboI GATC 4 cut(s) 132, 236, 319, 418
MboII GAAGA 3 cut(s) 66, 245, 386
MflI RGATCY 1 cut(s) 236
MhlI GDGCHC 1 cut(s) 306
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 4 cut(s) 123, 204, 243, 434
MluNI TGGCCA 1 cut(s) 35
Mly113I GGCGCC 2 cut(s) 21, 179
MlyI GAGTC 1 cut(s) 400
MnlI CCTC 6 cut(s) 32, 58, 62, 82, 185, 193
Mox20I TGGCCA 1 cut(s) 35
MroI TCCGGA 1 cut(s) 213
MscI TGGCCA 1 cut(s) 35
MseI TTAA 1 cut(s) 442
MslI CAYNNNNRTG 1 cut(s) 29
Msp20I TGGCCA 1 cut(s) 35
MspI CCGG 1 cut(s) 214
MwoI GCNNNNNNNGC 1 cut(s) 178
NarI GGCGCC 2 cut(s) 21, 179
NdeII GATC 4 cut(s) 132, 236, 319, 418
NlaIII CATG 3 cut(s) 34, 274, 310
NlaIV GGNNCC 3 cut(s) 22, 81, 180
PagI TCATGA 1 cut(s) 306
PfeI GAWTC 2 cut(s) 210, 341
PleI GAGTC 1 cut(s) 399
PluTI GGCGCC 2 cut(s) 24, 182
PpsI GAGTC 1 cut(s) 399
Psp124BI GAGCTC 1 cut(s) 306
PspN4I GGNNCC 3 cut(s) 22, 81, 180
PsuI RGATCY 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 29
SacI GAGCTC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 442
Sau3AI GATC 4 cut(s) 132, 236, 319, 418
SchI GAGTC 1 cut(s) 400
SduI GDGCHC 1 cut(s) 306
SetI ASST 9 cut(s) 68, 74, 110, 157, 196, 296, 306, 316, 385
SfaNI GCATC 1 cut(s) 420
SfoI GGCGCC 2 cut(s) 22, 180
SmiMI CAYNNNNRTG 1 cut(s) 29
Sse9I AATT 4 cut(s) 123, 204, 243, 434
SspDI GGCGCC 2 cut(s) 20, 178
SstI GAGCTC 1 cut(s) 306
TaiI ACGT 1 cut(s) 68
TaqI TCGA 3 cut(s) 241, 339, 344
TasI AATT 4 cut(s) 123, 204, 243, 434
TfiI GAWTC 2 cut(s) 210, 341
Tru1I TTAA 1 cut(s) 442
Tru9I TTAA 1 cut(s) 442
TspDTI ATGAA 1 cut(s) 323
TspGWI ACGGA 3 cut(s) 72, 249, 312
XapI RAATTY 1 cut(s) 434
XmiI GTMKAC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.