RchiOBHm_Chr5g0045561

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016976
Physical Location & Seq
Reverse (-)
41591547 .. 41592238
692 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32363

Sequence Viewer

Length: 390 bp
ATGTCCAGAATTGTCCATTTCCTTAGGGTTCCGCTCCTTGCGCCCTCCCTTAGGGGCTTGACTATAGTTAGACTCTGGAATGGACTTAGTTCCCATGGGTCTAGATTTATAGATCTTCACAAGCATGTTGTCGTGTTTTTCAGCTACGCTCATGGCTCCAATAAGCTCATGAAATCTAGTGATGCGTCCGGCATTGACATCAATCTGATAGTTCTTAGTTATCATCAATGCAGAGACGGGGAGGGTAGAGAGAGTCTTCTCGATCAACATCATATTAGTGATTTTCTGCCCACAAAGTTCCATCAAAGACTTGATACGAAGTGCTTCCGAATTGTAGTCAAGTACAGACTTGAAATCACAGAAGCGGAGGCTATGCCATCTCACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.84

Weight (kDa)

9.34

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 34
AciI CCGC 2 cut(s) 32, 365
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 1 cut(s) 353
AluBI AGCT 2 cut(s) 144, 166
AluI AGCT 2 cut(s) 144, 166
Alw26I GTCTC 1 cut(s) 228
Asp700I GAANNNNTTC 1 cut(s) 323
AspLEI GCGC 1 cut(s) 43
AxyI CCTNAGG 2 cut(s) 23, 50
BbsI GAAGAC 1 cut(s) 248
BccI CCATC 2 cut(s) 309, 385
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 2 cut(s) 102, 177
BfmI CTRYAG 1 cut(s) 63
BglII AGATCT 1 cut(s) 112
BmiI GGNNCC 2 cut(s) 30, 157
BmsI GCATC 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 248
BsaBI GATNNNNATC 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse21I CCTNAGG 2 cut(s) 23, 50
Bse8I GATNNNNATC 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 94
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 51
BsiSI CCGG 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 228
BsmBI CGTCTC 1 cut(s) 228
Bsp143I GATC 2 cut(s) 112, 262
Bsp19I CCATGG 1 cut(s) 94
BspACI CCGC 2 cut(s) 32, 365
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 2 cut(s) 30, 157
BsrBI CCGCTC 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 2 cut(s) 112, 262
BssT1I CCWWGG 1 cut(s) 94
BstDEI CTNAG 4 cut(s) 23, 50, 86, 215
BstDSI CCRYGG 1 cut(s) 94
BstENI CCTNNNNNAGG 1 cut(s) 49
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 2 cut(s) 115, 265
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 2 cut(s) 112, 262
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNSI RCATGY 1 cut(s) 128
BstSFI CTRYAG 1 cut(s) 63
BstV2I GAAGAC 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
Bsu36I CCTNAGG 2 cut(s) 23, 50
BtgI CCRYGG 1 cut(s) 94
CciI TCATGA 1 cut(s) 168
CfoI GCGC 1 cut(s) 43
CseI GACGC 1 cut(s) 174
Csp6I GTAC 1 cut(s) 343
CviAII CATG 4 cut(s) 95, 125, 152, 169
CviJI RGCY 5 cut(s) 57, 144, 156, 166, 371
CviKI_1 RGCY 5 cut(s) 57, 144, 156, 166, 371
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 4 cut(s) 23, 50, 86, 215
DpnI GATC 2 cut(s) 114, 264
DpnII GATC 2 cut(s) 112, 262
Eco130I CCWWGG 1 cut(s) 94
Eco81I CCTNAGG 2 cut(s) 23, 50
EcoNI CCTNNNNNAGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
Esp3I CGTCTC 1 cut(s) 228
FaeI CATG 4 cut(s) 98, 128, 155, 172
FaiI YATR 8 cut(s) 65, 96, 110, 126, 153, 170, 273, 374
FatI CATG 4 cut(s) 94, 124, 151, 168
FspBI CTAG 2 cut(s) 102, 177
GlaI GCGC 1 cut(s) 42
HapII CCGG 1 cut(s) 189
HgaI GACGC 1 cut(s) 174
HhaI GCGC 1 cut(s) 43
Hin1II CATG 4 cut(s) 98, 128, 155, 172
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HinfI GANTC 2 cut(s) 72, 253
HpaII CCGG 1 cut(s) 189
Hpy188I TCNGA 2 cut(s) 207, 329
Hpy188III TCNNGA 5 cut(s) 6, 76, 102, 169, 260
HpyCH4V TGCA 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 4 cut(s) 23, 50, 86, 215
Hsp92II CATG 4 cut(s) 98, 128, 155, 172
HspAI GCGC 1 cut(s) 41
Kzo9I GATC 2 cut(s) 112, 262
LmnI GCTCC 2 cut(s) 39, 161
LpnPI CCDG 3 cut(s) 19, 61, 202
LweI GCATC 1 cut(s) 172
MaeI CTAG 2 cut(s) 102, 177
MalI GATC 2 cut(s) 114, 264
MbiI CCGCTC 1 cut(s) 34
MboI GATC 2 cut(s) 112, 262
MboII GAAGA 2 cut(s) 107, 248
MflI RGATCY 1 cut(s) 112
MluCI AATT 2 cut(s) 9, 330
MlyI GAGTC 2 cut(s) 66, 262
MnlI CCTC 3 cut(s) 55, 235, 361
MroXI GAANNNNTTC 1 cut(s) 323
MslI CAYNNNNRTG 2 cut(s) 123, 276
MspI CCGG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 40
NcoI CCATGG 1 cut(s) 94
NdeII GATC 2 cut(s) 112, 262
NlaIII CATG 4 cut(s) 98, 128, 155, 172
NlaIV GGNNCC 2 cut(s) 30, 157
NspI RCATGY 1 cut(s) 128
PagI TCATGA 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 323
PleI GAGTC 2 cut(s) 66, 261
PpsI GAGTC 2 cut(s) 66, 261
PspN4I GGNNCC 2 cut(s) 30, 157
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
RseI CAYNNNNRTG 2 cut(s) 123, 276
Sau3AI GATC 2 cut(s) 112, 262
SchI GAGTC 2 cut(s) 66, 262
SetI ASST 2 cut(s) 146, 168
SfaNI GCATC 1 cut(s) 172
SfcI CTRYAG 1 cut(s) 63
SmiMI CAYNNNNRTG 2 cut(s) 123, 276
Sse9I AATT 2 cut(s) 9, 330
SsiI CCGC 2 cut(s) 32, 365
SspMI CTAG 2 cut(s) 102, 177
StyI CCWWGG 1 cut(s) 94
TaqI TCGA 1 cut(s) 261
TasI AATT 2 cut(s) 9, 330
TatI WGTACW 1 cut(s) 342
TspDTI ATGAA 1 cut(s) 185
XagI CCTNNNNNAGG 1 cut(s) 49
XbaI TCTAGA 1 cut(s) 101
XceI RCATGY 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 323
XspI CTAG 2 cut(s) 102, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.