Rh6DG245300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0016976
Physical Location & Seq
Reverse (-)
43257621 .. 43258079
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG245300.1

Sequence Viewer

Length: 198 bp
ATGGCTCTTAGTGTTGGTGGTGCCACCAATATGGCCAGCGGCGTTGCCTCCCTCTCTCTTTCCACGTTGACCTCTTCAGTTCCATGTTCGCCTATTTTGGCTATTACCTTCCCAAGTAGAGCGATTATATGGACCAGAAAGTCTAGAAGTATCCTAAGGTTAGGTTTTCGCTCTTGGCGCCTTCTCTTAGGGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

6.85

Weight (kDa)

12.0

Isoelectric Point (pI)

54.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 139
AccB1I GGYRCC 2 cut(s) 20, 177
AciI CCGC 1 cut(s) 39
AcoI YGGCCR 1 cut(s) 33
AcuI CTGAAG 1 cut(s) 60
AcyI GRCGYC 1 cut(s) 178
AoxI GGCC 1 cut(s) 33
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 132
AvaII GGWCC 1 cut(s) 132
AxyI CCTNAGG 1 cut(s) 155
BalI TGGCCA 1 cut(s) 35
BanI GGYRCC 2 cut(s) 20, 177
BciVI GTATCC 1 cut(s) 161
BfaI CTAG 1 cut(s) 144
BfoI RGCGCY 1 cut(s) 181
BfuI GTATCC 1 cut(s) 161
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 2 cut(s) 22, 179
BsaHI GRCGYC 1 cut(s) 178
Bse21I CCTNAGG 1 cut(s) 155
BshFI GGCC 1 cut(s) 35
BshNI GGYRCC 2 cut(s) 20, 177
BsnI GGCC 1 cut(s) 35
BspACI CCGC 1 cut(s) 39
BspANI GGCC 1 cut(s) 35
BspLI GGNNCC 2 cut(s) 22, 179
BspT107I GGYRCC 2 cut(s) 20, 177
BssNI GRCGYC 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 79
BstACI GRCGYC 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 3 cut(s) 8, 155, 187
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 1 cut(s) 180
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstXI CCANNNNNNTGG 1 cut(s) 31
Bsu36I CCTNAGG 1 cut(s) 155
BsuI GTATCC 1 cut(s) 161
BsuRI GGCC 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 37
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 132
CviAII CATG 1 cut(s) 84
CviJI RGCY 3 cut(s) 5, 35, 101
CviKI_1 RGCY 3 cut(s) 5, 35, 101
DdeI CTNAG 3 cut(s) 8, 155, 187
DinI GGCGCC 1 cut(s) 179
DrdI GACNNNNNNGTC 1 cut(s) 139
DseDI GACNNNNNNGTC 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 60
Eco81I CCTNAGG 1 cut(s) 155
EgeI GGCGCC 1 cut(s) 179
EheI GGCGCC 1 cut(s) 179
FaeI CATG 1 cut(s) 87
FaiI YATR 4 cut(s) 32, 85, 128, 130
FatI CATG 1 cut(s) 83
Fnu4HI GCNGC 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 1 cut(s) 144
GlaI GCGC 1 cut(s) 179
GluI GCNGC 1 cut(s) 40
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 1 cut(s) 35
HhaI GCGC 1 cut(s) 180
Hin1I GRCGYC 1 cut(s) 178
Hin1II CATG 1 cut(s) 87
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
Hpy166II GTNNAC 1 cut(s) 69
Hpy188III TCNNGA 1 cut(s) 144
Hpy8I GTNNAC 1 cut(s) 69
HpyAV CCTTC 2 cut(s) 118, 191
HpyCH4IV ACGT 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpyF3I CTNAG 3 cut(s) 8, 155, 187
HpySE526I ACGT 1 cut(s) 65
Hsp92I GRCGYC 1 cut(s) 178
Hsp92II CATG 1 cut(s) 87
HspAI GCGC 1 cut(s) 178
KasI GGCGCC 1 cut(s) 177
LpnPI CCDG 2 cut(s) 49, 148
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 65
MboII GAAGA 1 cut(s) 66
MlsI TGGCCA 1 cut(s) 35
MluNI TGGCCA 1 cut(s) 35
Mly113I GGCGCC 1 cut(s) 178
MnlI CCTC 3 cut(s) 58, 62, 82
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 29
Msp20I TGGCCA 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 177
NarI GGCGCC 1 cut(s) 178
NlaIII CATG 1 cut(s) 87
NlaIV GGNNCC 2 cut(s) 22, 179
PkrI GCNGC 1 cut(s) 41
PluTI GGCGCC 1 cut(s) 181
PspN4I GGNNCC 2 cut(s) 22, 179
PspPI GGNCC 1 cut(s) 132
RseI CAYNNNNRTG 1 cut(s) 29
SatI GCNGC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 132
SetI ASST 5 cut(s) 68, 74, 110, 161, 166
SfoI GGCGCC 1 cut(s) 179
SgeI CNNG 7 cut(s) 48, 76, 96, 126, 147, 156, 186
SinI GGWCC 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 29
SsiI CCGC 1 cut(s) 39
SspDI GGCGCC 1 cut(s) 177
SspMI CTAG 1 cut(s) 144
TaiI ACGT 1 cut(s) 68
TauI GCSGC 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 132
XbaI TCTAGA 1 cut(s) 143
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.