RchiOBHm_Chr3g0491571

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016976
Physical Location & Seq
Forward (+)
38316992 .. 38317352
361 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45454

Sequence Viewer

Length: 327 bp
ATGGTCGGAGGCTCCGCCTCTCTCTCTCTTCACACGTTGACCTCCACGGTTCCGTGCACGCCTCTCTTGGCGATTTCCTTCCTCTTTAGGGCGAACATATGGACCAGAACGTCCAGAATTGTCCCTATCTTTAGGGTTTCGCTCCTTGCGTCCTCCATTGGGGGCGCGACTATAGTTAGACTCCGGAATAGGCTTAGTTCCCACGGGTCTAGCATTATAGTTCTTCACAAGGATATTATCGTGCTTTTCAGCTACGTTCATGGCGCCAATGAGCTCATGAAACCTTGTGATACGTCCTGCATTTACATCAATCCGATAATTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.74

Weight (kDa)

10.07

Isoelectric Point (pI)

28.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 109
AccB1I GGYRCC 1 cut(s) 263
AccII CGCG 1 cut(s) 167
AccIII TCCGGA 1 cut(s) 183
AciI CCGC 1 cut(s) 15
AcyI GRCGYC 1 cut(s) 264
AfiI CCNNNNNNNGG 2 cut(s) 88, 159
AflIII ACRYGT 1 cut(s) 33
AluBI AGCT 2 cut(s) 252, 274
AluI AGCT 2 cut(s) 252, 274
Alw21I GWGCWC 2 cut(s) 59, 276
Alw44I GTGCAC 1 cut(s) 55
Aor13HI TCCGGA 1 cut(s) 183
ApaLI GTGCAC 1 cut(s) 55
AspLEI GCGC 2 cut(s) 167, 266
AspS9I GGNCC 1 cut(s) 102
AvaII GGWCC 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 59
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 276
Bbv12I GWGCWC 2 cut(s) 59, 276
BfaI CTAG 1 cut(s) 210
BfmI CTRYAG 1 cut(s) 171
BfoI RGCGCY 1 cut(s) 267
Bme18I GGWCC 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 102
BmiI GGNNCC 3 cut(s) 13, 51, 265
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 2 cut(s) 45, 202
BsaWI WCCGGW 1 cut(s) 183
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 159
BseAI TCCGGA 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 45, 202
BseLI CCNNNNNNNGG 2 cut(s) 88, 159
BseSI GKGCMC 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 167
BshNI GGYRCC 1 cut(s) 263
BsiHKAI GWGCWC 2 cut(s) 59, 276
BsiSI CCGG 1 cut(s) 184
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 88, 159
BsmFI GGGAC 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 59, 276
Bsp13I TCCGGA 1 cut(s) 183
BspACI CCGC 1 cut(s) 15
BspEI TCCGGA 1 cut(s) 183
BspFNI CGCG 1 cut(s) 167
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 3 cut(s) 13, 51, 265
BspT107I GGYRCC 1 cut(s) 263
BssECI CCNNGG 2 cut(s) 45, 202
BssNI GRCGYC 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 33
BstACI GRCGYC 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 194
BstDSI CCRYGG 2 cut(s) 45, 202
BstFNI CGCG 1 cut(s) 167
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 2 cut(s) 167, 266
BstSFI CTRYAG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 59
BstUI CGCG 1 cut(s) 167
BtgI CCRYGG 2 cut(s) 45, 202
Cac8I GCNNGC 1 cut(s) 59
CciI TCATGA 1 cut(s) 276
CfoI GCGC 2 cut(s) 167, 266
Cfr13I GGNCC 1 cut(s) 102
CseI GACGC 1 cut(s) 138
CviAII CATG 2 cut(s) 260, 277
CviJI RGCY 4 cut(s) 12, 193, 252, 274
CviKI_1 RGCY 4 cut(s) 12, 193, 252, 274
DdeI CTNAG 1 cut(s) 194
DinI GGCGCC 1 cut(s) 265
DrdI GACNNNNNNGTC 1 cut(s) 109
DseDI GACNNNNNNGTC 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
EciI GGCGGA 1 cut(s) 4
Ecl136II GAGCTC 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 276
EgeI GGCGCC 1 cut(s) 265
EheI GGCGCC 1 cut(s) 265
FaeI CATG 2 cut(s) 263, 280
FaiI YATR 6 cut(s) 98, 100, 173, 218, 261, 278
FaqI GGGAC 1 cut(s) 107
FatI CATG 2 cut(s) 259, 276
FauNDI CATATG 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 276
FspBI CTAG 1 cut(s) 210
GlaI GCGC 2 cut(s) 166, 265
HaeII RGCGCY 1 cut(s) 267
HapII CCGG 1 cut(s) 184
HgaI GACGC 1 cut(s) 138
HhaI GCGC 2 cut(s) 167, 266
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 2 cut(s) 263, 280
Hin6I GCGC 2 cut(s) 165, 264
HinP1I GCGC 2 cut(s) 165, 264
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HinfI GANTC 1 cut(s) 180
HpaII CCGG 1 cut(s) 184
Hpy166II GTNNAC 2 cut(s) 39, 57
Hpy188I TCNGA 2 cut(s) 8, 315
Hpy188III TCNNGA 3 cut(s) 114, 184, 277
Hpy8I GTNNAC 2 cut(s) 39, 57
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 4 cut(s) 35, 110, 255, 293
HpyCH4V TGCA 2 cut(s) 57, 300
HpyF3I CTNAG 1 cut(s) 194
HpySE526I ACGT 4 cut(s) 35, 110, 255, 293
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 2 cut(s) 263, 280
HspAI GCGC 2 cut(s) 165, 264
KasI GGCGCC 1 cut(s) 263
Kpn2I TCCGGA 1 cut(s) 183
LmnI GCTCC 2 cut(s) 17, 147
LpnPI CCDG 4 cut(s) 118, 127, 197, 310
MaeI CTAG 1 cut(s) 210
MaeII ACGT 4 cut(s) 35, 110, 255, 293
MboII GAAGA 2 cut(s) 20, 215
MhlI GDGCHC 2 cut(s) 59, 276
MluCI AATT 2 cut(s) 117, 318
Mly113I GGCGCC 1 cut(s) 264
MlyI GAGTC 1 cut(s) 174
MnlI CCTC 5 cut(s) 28, 52, 72, 92, 163
MroI TCCGGA 1 cut(s) 183
MspI CCGG 1 cut(s) 184
MvnI CGCG 1 cut(s) 167
NarI GGCGCC 1 cut(s) 264
NdeI CATATG 1 cut(s) 98
NlaIII CATG 2 cut(s) 263, 280
NlaIV GGNNCC 3 cut(s) 13, 51, 265
PagI TCATGA 1 cut(s) 276
PcsI WCGNNNNNNNCGW 1 cut(s) 146
PleI GAGTC 1 cut(s) 174
PluTI GGCGCC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 276
PspN4I GGNNCC 3 cut(s) 13, 51, 265
PspPI GGNCC 1 cut(s) 102
SacI GAGCTC 1 cut(s) 276
Sau96I GGNCC 1 cut(s) 102
SchI GAGTC 1 cut(s) 174
SduI GDGCHC 2 cut(s) 59, 276
SetI ASST 8 cut(s) 38, 44, 113, 254, 258, 276, 286, 296
SfcI CTRYAG 1 cut(s) 171
SfoI GGCGCC 1 cut(s) 265
SinI GGWCC 1 cut(s) 102
Sse9I AATT 2 cut(s) 117, 318
SsiI CCGC 1 cut(s) 15
SspDI GGCGCC 1 cut(s) 263
SspMI CTAG 1 cut(s) 210
SstI GAGCTC 1 cut(s) 276
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 4 cut(s) 38, 113, 258, 296
TasI AATT 2 cut(s) 117, 318
TspDTI ATGAA 2 cut(s) 248, 293
TspGWI ACGGA 1 cut(s) 42
VneI GTGCAC 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 102
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.