RchiOBHm_Chr4g0405061

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016976
Physical Location & Seq
Forward (+)
25153879 .. 25155068
1190 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37657

Sequence Viewer

Length: 489 bp
ATGCTTTGTAGGCAGGGACAATTTCTTCACGAGCTCTACAAATGCGTACCCAATGACCGGATACTCCACATCGAGAACATACATCTTTGTGCTCAGACTCCATTGATTGAGGGGCTCTTAAGGATGGCTCTTAGTGTTGGTGGCGCCACCAACATGGCCAGAGGCGTTGCGTCCCTCTCTCTTTCCACGTTAACCTCTTCTGTTCCGTGTTCGCCTATTTTGGCGGTTACCTTCCTTAATAGAGCGATTATATGGACCAGAACGTCCAGAAGTATTCCTAAGATTAGAGTTTCGCTCTTGGCGCCCTCTCTTAGGGGTGCAACTATAATTGGACTCCGGAATATGCTTTGTTTTCACAGATCTCGAATTATAGTTCTTCACAAGGATGTTGTCATGCTTTTCAGCGACATTCATAGCTTCAATGAGCTTATGAAACCTTGTGGTCCGTCCTGCTGTAACATCGATTTGATAGTTCTTAGCAACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.93

Weight (kDa)

9.44

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 262
AccB1I GGYRCC 2 cut(s) 143, 301
AccIII TCCGGA 1 cut(s) 336
AciI CCGC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 156
AcyI GRCGYC 2 cut(s) 144, 302
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 2 cut(s) 57, 312
AflII CTTAAG 1 cut(s) 118
AgsI TTSAA 1 cut(s) 421
AluBI AGCT 3 cut(s) 34, 417, 427
AluI AGCT 3 cut(s) 34, 417, 427
Alw21I GWGCWC 2 cut(s) 36, 94
Aor13HI TCCGGA 1 cut(s) 336
AoxI GGCC 1 cut(s) 156
AspLEI GCGC 2 cut(s) 146, 304
AspS9I GGNCC 2 cut(s) 255, 443
AvaII GGWCC 2 cut(s) 255, 443
BalI TGGCCA 1 cut(s) 158
BanI GGYRCC 2 cut(s) 143, 301
BanII GRGCYC 2 cut(s) 36, 117
BauI CACGAG 1 cut(s) 29
Bbv12I GWGCWC 2 cut(s) 36, 94
BccI CCATC 1 cut(s) 118
BciVI GTATCC 1 cut(s) 54
BfoI RGCGCY 2 cut(s) 147, 305
BfrI CTTAAG 1 cut(s) 118
BfuI GTATCC 1 cut(s) 54
BglII AGATCT 1 cut(s) 359
Bme18I GGWCC 2 cut(s) 255, 443
BmgT120I GGNCC 2 cut(s) 255, 443
BmiI GGNNCC 2 cut(s) 145, 303
BplI GAGNNNNNCTC 2 cut(s) 279, 311
Bsa29I ATCGAT 1 cut(s) 462
BsaHI GRCGYC 2 cut(s) 144, 302
BsaWI WCCGGW 2 cut(s) 57, 336
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 312
BseAI TCCGGA 1 cut(s) 336
BseCI ATCGAT 1 cut(s) 462
BseGI GGATG 2 cut(s) 129, 391
BseLI CCNNNNNNNGG 2 cut(s) 57, 312
BseMII CTCAG 1 cut(s) 107
BshFI GGCC 1 cut(s) 158
BshNI GGYRCC 2 cut(s) 143, 301
BshVI ATCGAT 1 cut(s) 462
BsiHKAI GWGCWC 2 cut(s) 36, 94
BsiSI CCGG 2 cut(s) 58, 337
BslFI GGGAC 2 cut(s) 30, 157
BslI CCNNNNNNNGG 2 cut(s) 57, 312
BsmFI GGGAC 2 cut(s) 30, 157
BsnI GGCC 1 cut(s) 158
Bsp1286I GDGCHC 3 cut(s) 36, 94, 117
Bsp13I TCCGGA 1 cut(s) 336
Bsp143I GATC 1 cut(s) 359
BspACI CCGC 1 cut(s) 224
BspANI GGCC 1 cut(s) 158
BspCNI CTCAG 1 cut(s) 106
BspDI ATCGAT 1 cut(s) 462
BspEI TCCGGA 1 cut(s) 336
BspLI GGNNCC 2 cut(s) 145, 303
BspT107I GGYRCC 2 cut(s) 143, 301
BspTI CTTAAG 1 cut(s) 118
BssMI GATC 1 cut(s) 359
BssNI GRCGYC 2 cut(s) 144, 302
BssSI CACGAG 1 cut(s) 29
Bst2BI CACGAG 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 202
BstACI GRCGYC 2 cut(s) 144, 302
BstAFI CTTAAG 1 cut(s) 118
BstDEI CTNAG 5 cut(s) 93, 131, 279, 311, 476
BstEII GGTNACC 1 cut(s) 226
BstENI CCTNNNNNAGG 1 cut(s) 310
BstF5I GGATG 2 cut(s) 129, 391
BstH2I RGCGCY 2 cut(s) 147, 305
BstHHI GCGC 2 cut(s) 146, 304
BstKTI GATC 1 cut(s) 362
BstMBI GATC 1 cut(s) 359
BstMWI GCNNNNNNNGC 2 cut(s) 10, 301
BstPI GGTNACC 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 359
BstXI CCANNNNNNTGG 1 cut(s) 154
BstYI RGATCY 1 cut(s) 359
Bsu15I ATCGAT 1 cut(s) 462
BsuI GTATCC 1 cut(s) 54
BsuRI GGCC 1 cut(s) 158
BsuTUI ATCGAT 1 cut(s) 462
BtsCI GGATG 2 cut(s) 129, 391
CfoI GCGC 2 cut(s) 146, 304
Cfr13I GGNCC 2 cut(s) 255, 443
ClaI ATCGAT 1 cut(s) 462
CseI GACGC 1 cut(s) 159
Csp6I GTAC 1 cut(s) 47
CviAII CATG 2 cut(s) 154, 394
CviJI RGCY 6 cut(s) 34, 115, 128, 158, 417, 427
CviKI_1 RGCY 6 cut(s) 34, 115, 128, 158, 417, 427
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 5 cut(s) 93, 131, 279, 311, 476
DinI GGCGCC 2 cut(s) 145, 303
DpnI GATC 1 cut(s) 361
DpnII GATC 1 cut(s) 359
DrdI GACNNNNNNGTC 1 cut(s) 262
DseDI GACNNNNNNGTC 1 cut(s) 262
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 202
EarI CTCTTC 1 cut(s) 202
Ecl136II GAGCTC 1 cut(s) 34
Eco24I GRGCYC 2 cut(s) 36, 117
Eco47I GGWCC 2 cut(s) 255, 443
Eco53kI GAGCTC 1 cut(s) 34
Eco91I GGTNACC 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 34
EcoNI CCTNNNNNAGG 1 cut(s) 310
EcoO65I GGTNACC 1 cut(s) 226
EcoT38I GRGCYC 2 cut(s) 36, 117
EgeI GGCGCC 2 cut(s) 145, 303
EheI GGCGCC 2 cut(s) 145, 303
FaeI CATG 2 cut(s) 157, 397
FaqI GGGAC 2 cut(s) 30, 157
FatI CATG 2 cut(s) 153, 393
FokI GGATG 2 cut(s) 136, 398
FriOI GRGCYC 2 cut(s) 36, 117
GlaI GCGC 2 cut(s) 145, 303
HaeII RGCGCY 2 cut(s) 147, 305
HaeIII GGCC 1 cut(s) 158
HapII CCGG 2 cut(s) 58, 337
HgaI GACGC 1 cut(s) 159
HhaI GCGC 2 cut(s) 146, 304
Hin1I GRCGYC 2 cut(s) 144, 302
Hin1II CATG 2 cut(s) 157, 397
Hin6I GCGC 2 cut(s) 144, 302
HinP1I GCGC 2 cut(s) 144, 302
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HinfI GANTC 2 cut(s) 97, 333
HpaI GTTAAC 1 cut(s) 192
HpaII CCGG 2 cut(s) 58, 337
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 5 cut(s) 29, 73, 267, 337, 363
Hpy8I GTNNAC 1 cut(s) 192
HpyAV CCTTC 1 cut(s) 241
HpyCH4IV ACGT 2 cut(s) 188, 263
HpyCH4V TGCA 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 301
HpyF3I CTNAG 5 cut(s) 93, 131, 279, 311, 476
HpySE526I ACGT 2 cut(s) 188, 263
Hsp92I GRCGYC 2 cut(s) 144, 302
Hsp92II CATG 2 cut(s) 157, 397
HspAI GCGC 2 cut(s) 144, 302
KasI GGCGCC 2 cut(s) 143, 301
Kpn2I TCCGGA 1 cut(s) 336
KspAI GTTAAC 1 cut(s) 192
Kzo9I GATC 1 cut(s) 359
LpnPI CCDG 6 cut(s) 71, 172, 271, 280, 350, 463
MaeII ACGT 2 cut(s) 188, 263
MaeIII GTNAC 2 cut(s) 226, 455
MalI GATC 1 cut(s) 361
MboI GATC 1 cut(s) 359
MboII GAAGA 3 cut(s) 17, 189, 368
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 3 cut(s) 36, 94, 117
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 3 cut(s) 20, 327, 366
MluNI TGGCCA 1 cut(s) 158
Mly113I GGCGCC 2 cut(s) 144, 302
MlyI GAGTC 2 cut(s) 91, 327
MnlI CCTC 5 cut(s) 103, 155, 185, 205, 316
Mox20I TGGCCA 1 cut(s) 158
MroI TCCGGA 1 cut(s) 336
MscI TGGCCA 1 cut(s) 158
MseI TTAA 4 cut(s) 119, 191, 237, 487
MslI CAYNNNNRTG 3 cut(s) 87, 152, 384
Msp20I TGGCCA 1 cut(s) 158
MspCI CTTAAG 1 cut(s) 118
MspI CCGG 2 cut(s) 58, 337
MwoI GCNNNNNNNGC 2 cut(s) 10, 301
NarI GGCGCC 2 cut(s) 144, 302
NdeII GATC 1 cut(s) 359
NlaIII CATG 2 cut(s) 157, 397
NlaIV GGNNCC 2 cut(s) 145, 303
PleI GAGTC 2 cut(s) 91, 327
PluTI GGCGCC 2 cut(s) 147, 305
PpsI GAGTC 2 cut(s) 91, 327
Psp124BI GAGCTC 1 cut(s) 36
PspEI GGTNACC 1 cut(s) 226
PspN4I GGNNCC 2 cut(s) 145, 303
PspPI GGNCC 2 cut(s) 255, 443
PsuI RGATCY 1 cut(s) 359
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
RseI CAYNNNNRTG 3 cut(s) 87, 152, 384
SacI GAGCTC 1 cut(s) 36
SaqAI TTAA 4 cut(s) 119, 191, 237, 487
Sau3AI GATC 1 cut(s) 359
Sau96I GGNCC 2 cut(s) 255, 443
SchI GAGTC 2 cut(s) 91, 327
SduI GDGCHC 3 cut(s) 36, 94, 117
SetI ASST 8 cut(s) 36, 191, 197, 233, 266, 419, 429, 439
SfoI GGCGCC 2 cut(s) 145, 303
SinI GGWCC 2 cut(s) 255, 443
SmiMI CAYNNNNRTG 3 cut(s) 87, 152, 384
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 3 cut(s) 20, 327, 366
SsiI CCGC 1 cut(s) 224
SspDI GGCGCC 2 cut(s) 143, 301
SstI GAGCTC 1 cut(s) 36
TaiI ACGT 2 cut(s) 191, 266
TaqI TCGA 3 cut(s) 72, 364, 462
TasI AATT 3 cut(s) 20, 327, 366
Tru1I TTAA 4 cut(s) 119, 191, 237, 487
Tru9I TTAA 4 cut(s) 119, 191, 237, 487
TspDTI ATGAA 2 cut(s) 401, 446
TspGWI ACGGA 2 cut(s) 195, 435
Vha464I CTTAAG 1 cut(s) 118
VpaK11BI GGWCC 2 cut(s) 255, 443
XagI CCTNNNNNAGG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.