Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015729

Physical Location & Seq

Genomic Coordinates Reverse (-)

27353936 .. 27358843

Gene Structure 4908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56386

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGGAATTAGTCAAATACAGAGGGCCTGTACTGTGCTCGGCGACTACGGTGGTGGCAATAGCACTTTCTCATCCTCGTGGGAAGCCCTGCCTTCTGTTGCCGTCGTCGGCGGCCAGCCGCGGTTCGGAAGGAAATTCAGGATGAAACTGATAAGACTAGCAGGAAGGTCAAAAATGATATCTTCTGTTCCTATCCATCTCAGTATCTACTCGCCCAACGGTGTGCGACCCGGGGGTTATAGGATTTATGGTGTCTTTGACAACCAGCTGCCTGCTGCTTTGAGGAGGCTTCCATTTGATCGACATCTGTCTATGCAGAATGTAAGGAGAGTGGTTTCAGAGGCTGATGGTTATCAGCCTCACTTAATTGCCCCAGAGCAAGGTTACCACCGCCTTATTGAGGGATCACTGAATTATTTTAGAGGCCCAGCTGAGGTTTCTGTTGATGCTAGTTTGTGTCTTGAAAGAACTTGTGAGGAAGTCATTAGTGGAAACTCAGGAAATGAGACGGTTTCTGACTCTGCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

176

Amino Acids

19.22

Weight (kDa)

9.15

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	78 - 149	1.6e-07	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0015729)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0335201 RchiOBHm_Chr1g0335211
rosa_multiflora	Rmu_sc0006746.1_g000019 Rmu_ssc0000259.1_g000039
rosa_rugosa	Rorug01G0121000
rosa_samantha	Rh1AG142100 Rh1AG142500 Rh1BG111000 Rh1CG134100 Rh1CG134400 Rh1CG134500 Rh1DG147100 Rh1DG147600 Rh1DG147900
rosa_wichuraiana	Rw1G011780 Rw1G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	121
AciI	CCGC	4 cut(s)	111, 119, 121, 391
AclWI	GGATC	1 cut(s)	412
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	134
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	4 cut(s)	125, 380, 400, 433
AgsI	TTSAA	1 cut(s)	464
AluBI	AGCT	3 cut(s)	268, 431, 528
AluI	AGCT	3 cut(s)	268, 431, 528
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	1 cut(s)	412
AlwNI	CAGNNNCTG	1 cut(s)	344
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	3 cut(s)	24, 112, 424
ApeKI	GCWGC	2 cut(s)	268, 275
ApoI	RAATTY	1 cut(s)	134
AspS9I	GGNCC	2 cut(s)	24, 425
AsuC2I	CCSGG	2 cut(s)	231, 232
AvaI	CYCGRG	1 cut(s)	230
BauI	CACGAG	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	39
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	2 cut(s)	255, 262
BccI	CCATC	2 cut(s)	204, 341
BceAI	ACGGC	1 cut(s)	86
BcnI	CCSGG	2 cut(s)	231, 232
BcoDI	GTCTC	1 cut(s)	500
BfaI	CTAG	2 cut(s)	158, 450
BisI	GCNGC	4 cut(s)	112, 119, 269, 276
BlsI	GCNGC	4 cut(s)	113, 120, 270, 277
Bme1390I	CCNGG	2 cut(s)	231, 232
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	24, 425
BmrFI	CCNGG	2 cut(s)	231, 232
BmsI	GCATC	1 cut(s)	436
BoxI	GACNNNNGTC	1 cut(s)	307
Bpu10I	CCTNAGC	1 cut(s)	432
BpuMI	CCSGG	2 cut(s)	231, 232
BsaBI	GATNNNNATC	2 cut(s)	303, 351
BsaJI	CCNNGG	3 cut(s)	119, 230, 231
Bsc4I	CCNNNNNNNGG	4 cut(s)	125, 380, 400, 433
Bse8I	GATNNNNATC	2 cut(s)	303, 351
BseDI	CCNNGG	3 cut(s)	119, 230, 231
BseGI	GGATG	2 cut(s)	71, 147
BseJI	GATNNNNATC	2 cut(s)	303, 351
BseLI	CCNNNNNNNGG	4 cut(s)	125, 380, 400, 433
BseMII	CTCAG	3 cut(s)	214, 423, 510
BseRI	GAGGAG	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	255, 262
BseYI	CCCAGC	1 cut(s)	427
Bsh1236I	CGCG	1 cut(s)	121
BshFI	GGCC	3 cut(s)	26, 114, 426
BsiHKAI	GWGCWC	1 cut(s)	39
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	231
BslI	CCNNNNNNNGG	4 cut(s)	125, 380, 400, 433
BsmAI	GTCTC	1 cut(s)	500
BsmBI	CGTCTC	1 cut(s)	500
BsnI	GGCC	3 cut(s)	26, 114, 426
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	298, 404
BspACI	CCGC	4 cut(s)	111, 119, 121, 391
BspANI	GGCC	3 cut(s)	26, 114, 426
BspCNI	CTCAG	3 cut(s)	213, 424, 509
BspFNI	CGCG	1 cut(s)	121
BspPI	GGATC	1 cut(s)	412
BssECI	CCNNGG	3 cut(s)	119, 230, 231
BssMI	GATC	2 cut(s)	298, 404
BssSI	CACGAG	1 cut(s)	76
Bst2BI	CACGAG	1 cut(s)	76
Bst4CI	ACNGT	4 cut(s)	34, 50, 221, 511
BstC8I	GCNNGC	3 cut(s)	116, 273, 526
BstDEI	CTNAG	3 cut(s)	200, 432, 496
BstDSI	CCRYGG	1 cut(s)	119
BstEII	GGTNACC	1 cut(s)	383
BstENI	CCTNNNNNAGG	1 cut(s)	398
BstF5I	GGATG	2 cut(s)	71, 147
BstFNI	CGCG	1 cut(s)	121
BstKTI	GATC	2 cut(s)	301, 407
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	2 cut(s)	298, 404
BstPAI	GACNNNNGTC	1 cut(s)	307
BstPI	GGTNACC	1 cut(s)	383
BstSCI	CCNGG	2 cut(s)	229, 230
BstUI	CGCG	1 cut(s)	121
BstV1I	GCAGC	2 cut(s)	255, 262
BsuRI	GGCC	3 cut(s)	26, 114, 426
BtgI	CCRYGG	1 cut(s)	119
BtsCI	GGATG	2 cut(s)	71, 147
BtsIMutI	CAGTG	1 cut(s)	407
Cac8I	GCNNGC	3 cut(s)	116, 273, 526
CaiI	CAGNNNCTG	1 cut(s)	344
Cfr13I	GGNCC	2 cut(s)	24, 425
Cfr42I	CCGCGG	1 cut(s)	122
Cfr9I	CCCGGG	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	30
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	3 cut(s)	200, 432, 496
DpnI	GATC	2 cut(s)	300, 406
DpnII	GATC	2 cut(s)	298, 404
EaeI	YGGCCR	1 cut(s)	112
Eco32I	GATATC	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	230
Eco91I	GGTNACC	1 cut(s)	383
EcoNI	CCTNNNNNAGG	1 cut(s)	398
EcoO109I	RGGNCCY	1 cut(s)	24
EcoO65I	GGTNACC	1 cut(s)	383
EcoRV	GATATC	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	500
FaiI	YATR	3 cut(s)	240, 249, 314
Fnu4HI	GCNGC	4 cut(s)	112, 119, 269, 276
FokI	GGATG	2 cut(s)	58, 154
Fsp4HI	GCNGC	4 cut(s)	112, 119, 269, 276
FspBI	CTAG	2 cut(s)	158, 450
GluI	GCNGC	4 cut(s)	112, 119, 269, 276
GsaI	CCCAGC	1 cut(s)	431
HaeIII	GGCC	3 cut(s)	26, 114, 426
HapII	CCGG	1 cut(s)	231
HinfI	GANTC	1 cut(s)	518
HpaII	CCGG	1 cut(s)	231
Hpy188I	TCNGA	3 cut(s)	128, 340, 517
Hpy188III	TCNNGA	3 cut(s)	139, 461, 498
Hpy99I	CGWCG	2 cut(s)	107, 110
HpyAV	CCTTC	3 cut(s)	102, 123, 159
HpyCH4III	ACNGT	4 cut(s)	34, 50, 221, 511
HpyCH4V	TGCA	2 cut(s)	316, 524
HpyF3I	CTNAG	3 cut(s)	200, 432, 496
KspI	CCGCGG	1 cut(s)	122
Kzo9I	GATC	2 cut(s)	298, 404
Lsp1109I	GCAGC	2 cut(s)	255, 262
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	2 cut(s)	158, 450
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	2 cut(s)	300, 406
MboI	GATC	2 cut(s)	298, 404
MboII	GAAGA	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	4 cut(s)	6, 134, 366, 412
MlyI	GAGTC	1 cut(s)	512
MseI	TTAA	1 cut(s)	365
MslI	CAYNNNNRTG	1 cut(s)	76
MspA1I	CMGCKG	3 cut(s)	121, 268, 431
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	2 cut(s)	231, 232
MvnI	CGCG	1 cut(s)	121
NciI	CCSGG	2 cut(s)	231, 232
NdeII	GATC	2 cut(s)	298, 404
NmeAIII	GCCGAG	1 cut(s)	18
PkrI	GCNGC	4 cut(s)	113, 120, 270, 277
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
PshAI	GACNNNNGTC	1 cut(s)	307
PspEI	GGTNACC	1 cut(s)	383
PspFI	CCCAGC	1 cut(s)	427
PspPI	GGNCC	2 cut(s)	24, 425
PstNI	CAGNNNCTG	1 cut(s)	344
PvuII	CAGCTG	2 cut(s)	268, 431
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	76
SacII	CCGCGG	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	365
SatI	GCNGC	4 cut(s)	112, 119, 269, 276
Sau3AI	GATC	2 cut(s)	298, 404
Sau96I	GGNCC	2 cut(s)	24, 425
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	2 cut(s)	231, 232
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	6 cut(s)	170, 270, 385, 433, 438, 530
SfaNI	GCATC	1 cut(s)	436
Sfr303I	CCGCGG	1 cut(s)	122
SgrBI	CCGCGG	1 cut(s)	122
SmaI	CCCGGG	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	76
Sse9I	AATT	4 cut(s)	6, 134, 366, 412
SsiI	CCGC	4 cut(s)	111, 119, 121, 391
SspMI	CTAG	2 cut(s)	158, 450
StyD4I	CCNGG	2 cut(s)	229, 230
TaaI	ACNGT	4 cut(s)	34, 50, 221, 511
TaqI	TCGA	1 cut(s)	301
TasI	AATT	4 cut(s)	6, 134, 366, 412
TatI	WGTACW	1 cut(s)	29
TauI	GCSGC	2 cut(s)	114, 121
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TscAI	CASTG	1 cut(s)	414
TseI	GCWGC	2 cut(s)	268, 275
TspDTI	ATGAA	1 cut(s)	158
TspMI	CCCGGG	1 cut(s)	230
TspRI	CASTG	1 cut(s)	414
XagI	CCTNNNNNAGG	1 cut(s)	398
XapI	RAATTY	1 cut(s)	134
XmaI	CCCGGG	1 cut(s)	230
XspI	CTAG	2 cut(s)	158, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.