Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0015729

Physical Location & Seq

Genomic Coordinates Reverse (-)

26357694 .. 26359426

Gene Structure 1733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G011790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGAAGTGGATGCAGCAGACGACCCGGAGGTTATAGGATGTATGGTGTCTTTGACAACCAGCTGCCTGCTGCTTTGAGGAGGCTTCCATTTGATCGACATCTGTCTATGCAGAATGTAAGGAGAGCGGTTTCAGAGGCCGATGGTTATCAGCCTCACTTAATTGCCCCAGAGCAAGGTTACCGCCGCCTTACTGAGGGATCACTGAATTATTTTAGAGGTCCAGGTGATGAGGTCTTTGTCGATGCTGTAAGGAAGTGGAGTAACCAGTTGGCCCAGGAGGAAAACCAGGAAACCCGGGAGGATATCCAGCTGCCAATGCTGCTGTGGACCGCTATTCAGAGGTTCACTTTCAGAGGATATATAGGATCGAACATGTCCTCTTATGTGAGAATGGTGTCGGAGACACTGAGGAATACGATTCCCAAGGCTGTTGTTCACTGTCAACGTAAGCAGTTGGGTCAGATGCTTGATGAAGATTTGATGGAGAGGAGGCTACAGTGTGCTAAAAGGCTTGAATTATACGTACAAGTCAGCTGGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

181

Amino Acids

21.03

Weight (kDa)

9.29

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	10 - 94	1.7e-06	Dynamin central region
GED	PF02212	122 - 163	3.2e-07	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015729)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0335201 RchiOBHm_Chr1g0335211
rosa_multiflora	Rmu_sc0006746.1_g000019 Rmu_ssc0000259.1_g000039
rosa_rugosa	Rorug01G0121000
rosa_samantha	Rh1AG142100 Rh1AG142500 Rh1BG111000 Rh1CG134100 Rh1CG134400 Rh1CG134500 Rh1DG147100 Rh1DG147600 Rh1DG147900
rosa_wichuraiana	Rw1G011780 Rw1G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	128
AciI	CCGC	4 cut(s)	128, 184, 187, 333
AclWI	GGATC	2 cut(s)	208, 376
AfaI	GTAC	1 cut(s)	528
AfiI	CCNNNNNNNGG	2 cut(s)	176, 196
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	1 cut(s)	518
AjnI	CCWGG	3 cut(s)	223, 276, 288
AluBI	AGCT	3 cut(s)	64, 313, 537
AluI	AGCT	3 cut(s)	64, 313, 537
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	2 cut(s)	208, 376
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	2 cut(s)	138, 273
ApeKI	GCWGC	5 cut(s)	15, 64, 71, 313, 322
AspS9I	GGNCC	3 cut(s)	221, 274, 330
AsuC2I	CCSGG	3 cut(s)	27, 298, 299
AsuHPI	GGTGA	1 cut(s)	239
AvaI	CYCGRG	1 cut(s)	297
AvaII	GGWCC	2 cut(s)	221, 330
BbvI	GCAGC	5 cut(s)	27, 51, 58, 300, 309
BccI	CCATC	2 cut(s)	137, 478
BciT130I	CCWGG	3 cut(s)	225, 278, 290
BcnI	CCSGG	3 cut(s)	27, 298, 299
BcoDI	GTCTC	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	497
BisI	GCNGC	6 cut(s)	16, 65, 72, 187, 314, 323
BlsI	GCNGC	6 cut(s)	17, 66, 73, 188, 315, 324
Bme1390I	CCNGG	6 cut(s)	27, 225, 278, 290, 298, 299
Bme18I	GGWCC	2 cut(s)	221, 330
BmeT110I	CYCGRG	1 cut(s)	297
BmgT120I	GGNCC	3 cut(s)	221, 274, 330
BmrFI	CCNGG	6 cut(s)	27, 225, 278, 290, 298, 299
BmsI	GCATC	3 cut(s)	2, 235, 456
BoxI	GACNNNNGTC	1 cut(s)	103
BpuMI	CCSGG	3 cut(s)	27, 298, 299
BsaAI	YACGTR	1 cut(s)	526
BsaBI	GATNNNNATC	2 cut(s)	99, 147
BsaJI	CCNNGG	3 cut(s)	276, 297, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 196
Bse1I	ACTGG	1 cut(s)	268
Bse8I	GATNNNNATC	2 cut(s)	99, 147
BseBI	CCWGG	3 cut(s)	225, 278, 290
BseDI	CCNNGG	3 cut(s)	276, 297, 426
BseGI	GGATG	2 cut(s)	17, 45
BseJI	GATNNNNATC	2 cut(s)	99, 147
BseLI	CCNNNNNNNGG	2 cut(s)	176, 196
BseMII	CTCAG	2 cut(s)	186, 401
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	2 cut(s)	94, 505
BseXI	GCAGC	5 cut(s)	27, 51, 58, 300, 309
BseYI	CCCAGC	1 cut(s)	537
BshFI	GGCC	2 cut(s)	140, 275
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	2 cut(s)	27, 298
BslI	CCNNNNNNNGG	2 cut(s)	176, 196
BsmAI	GTCTC	1 cut(s)	398
BsnI	GGCC	2 cut(s)	140, 275
BsoBI	CYCGRG	1 cut(s)	297
Bsp143I	GATC	3 cut(s)	94, 200, 368
BspACI	CCGC	4 cut(s)	128, 184, 187, 333
BspANI	GGCC	2 cut(s)	140, 275
BspCNI	CTCAG	2 cut(s)	187, 402
BspPI	GGATC	2 cut(s)	208, 376
BsrBI	CCGCTC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	3 cut(s)	276, 297, 426
BssMI	GATC	3 cut(s)	94, 200, 368
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	3 cut(s)	225, 278, 290
Bst4CI	ACNGT	2 cut(s)	443, 501
BstBAI	YACGTR	1 cut(s)	526
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	2 cut(s)	195, 410
BstEII	GGTNACC	1 cut(s)	179
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	2 cut(s)	17, 45
BstKTI	GATC	3 cut(s)	97, 203, 371
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	3 cut(s)	94, 200, 368
BstMWI	GCNNNNNNNGC	2 cut(s)	319, 322
BstNI	CCWGG	3 cut(s)	225, 278, 290
BstNSI	RCATGY	1 cut(s)	379
BstPAI	GACNNNNGTC	1 cut(s)	103
BstPI	GGTNACC	1 cut(s)	179
BstSCI	CCNGG	6 cut(s)	25, 223, 276, 288, 296, 297
BstSFI	CTRYAG	1 cut(s)	497
BstSNI	TACGTA	1 cut(s)	526
BstV1I	GCAGC	5 cut(s)	27, 51, 58, 300, 309
BsuRI	GGCC	2 cut(s)	140, 275
BtsCI	GGATG	2 cut(s)	17, 45
BtsIMutI	CAGTG	4 cut(s)	203, 407, 439, 506
Cac8I	GCNNGC	1 cut(s)	69
Cfr13I	GGNCC	3 cut(s)	221, 274, 330
Cfr9I	CCCGGG	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	527
CviAII	CATG	1 cut(s)	376
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	2 cut(s)	195, 410
DpnI	GATC	3 cut(s)	96, 202, 370
DpnII	GATC	3 cut(s)	94, 200, 368
Eco105I	TACGTA	1 cut(s)	526
Eco130I	CCWWGG	1 cut(s)	426
Eco32I	GATATC	1 cut(s)	307
Eco47I	GGWCC	2 cut(s)	221, 330
Eco88I	CYCGRG	1 cut(s)	297
Eco91I	GGTNACC	1 cut(s)	179
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoO65I	GGTNACC	1 cut(s)	179
EcoRII	CCWGG	3 cut(s)	223, 276, 288
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	1 cut(s)	379
FaiI	YATR	8 cut(s)	36, 45, 110, 363, 365, 377, 387, 523
FatI	CATG	1 cut(s)	375
Fnu4HI	GCNGC	6 cut(s)	16, 65, 72, 187, 314, 323
FokI	GGATG	2 cut(s)	24, 52
Fsp4HI	GCNGC	6 cut(s)	16, 65, 72, 187, 314, 323
GluI	GCNGC	6 cut(s)	16, 65, 72, 187, 314, 323
GsaI	CCCAGC	1 cut(s)	541
HaeIII	GGCC	2 cut(s)	140, 275
HapII	CCGG	2 cut(s)	27, 298
Hin1II	CATG	1 cut(s)	379
HincII	GTYRAC	1 cut(s)	446
HindII	GTYRAC	1 cut(s)	446
HinfI	GANTC	1 cut(s)	421
HpaII	CCGG	2 cut(s)	27, 298
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	4 cut(s)	330, 348, 439, 446
Hpy188I	TCNGA	5 cut(s)	136, 342, 356, 403, 465
Hpy8I	GTNNAC	4 cut(s)	330, 348, 439, 446
HpyCH4III	ACNGT	2 cut(s)	443, 501
HpyCH4IV	ACGT	2 cut(s)	448, 525
HpyCH4V	TGCA	2 cut(s)	15, 112
HpyF10VI	GCNNNNNNNGC	2 cut(s)	319, 322
HpyF3I	CTNAG	2 cut(s)	195, 410
HpySE526I	ACGT	2 cut(s)	448, 525
Hsp92II	CATG	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	94, 200, 368
Lsp1109I	GCAGC	5 cut(s)	27, 51, 58, 300, 309
LweI	GCATC	3 cut(s)	2, 235, 456
MaeII	ACGT	2 cut(s)	448, 525
MaeIII	GTNAC	2 cut(s)	179, 263
MalI	GATC	3 cut(s)	96, 202, 370
MbiI	CCGCTC	1 cut(s)	128
MboI	GATC	3 cut(s)	94, 200, 368
MboII	GAAGA	1 cut(s)	488
MluCI	AATT	3 cut(s)	162, 208, 518
MmeI	TCCRAC	1 cut(s)	381
MseI	TTAA	1 cut(s)	161
MspA1I	CMGCKG	3 cut(s)	64, 313, 537
MspI	CCGG	2 cut(s)	27, 298
MspR9I	CCNGG	6 cut(s)	27, 225, 278, 290, 298, 299
MvaI	CCWGG	3 cut(s)	225, 278, 290
MwoI	GCNNNNNNNGC	2 cut(s)	319, 322
NciI	CCSGG	3 cut(s)	27, 298, 299
NdeII	GATC	3 cut(s)	94, 200, 368
NlaIII	CATG	1 cut(s)	379
NspI	RCATGY	1 cut(s)	379
PciI	ACATGT	1 cut(s)	375
PfeI	GAWTC	1 cut(s)	421
PkrI	GCNGC	6 cut(s)	17, 66, 73, 188, 315, 324
Ppu21I	YACGTR	1 cut(s)	526
PscI	ACATGT	1 cut(s)	375
PshAI	GACNNNNGTC	1 cut(s)	103
Psp6I	CCWGG	3 cut(s)	223, 276, 288
PspEI	GGTNACC	1 cut(s)	179
PspFI	CCCAGC	1 cut(s)	537
PspGI	CCWGG	3 cut(s)	223, 276, 288
PspPI	GGNCC	3 cut(s)	221, 274, 330
PvuII	CAGCTG	3 cut(s)	64, 313, 537
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	6 cut(s)	16, 65, 72, 187, 314, 323
Sau3AI	GATC	3 cut(s)	94, 200, 368
Sau96I	GGNCC	3 cut(s)	221, 274, 330
ScrFI	CCNGG	6 cut(s)	27, 225, 278, 290, 298, 299
SfaNI	GCATC	3 cut(s)	2, 235, 456
SfcI	CTRYAG	1 cut(s)	497
SinI	GGWCC	2 cut(s)	221, 330
SmaI	CCCGGG	1 cut(s)	299
SnaBI	TACGTA	1 cut(s)	526
Sse9I	AATT	3 cut(s)	162, 208, 518
SsiI	CCGC	4 cut(s)	128, 184, 187, 333
StyD4I	CCNGG	6 cut(s)	25, 223, 276, 288, 296, 297
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	2 cut(s)	443, 501
TaiI	ACGT	2 cut(s)	451, 528
TaqI	TCGA	3 cut(s)	97, 243, 371
TasI	AATT	3 cut(s)	162, 208, 518
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	4 cut(s)	210, 414, 446, 506
TseI	GCWGC	5 cut(s)	15, 64, 71, 313, 322
TspDTI	ATGAA	1 cut(s)	489
TspMI	CCCGGG	1 cut(s)	297
TspRI	CASTG	4 cut(s)	210, 414, 446, 506
VpaK11BI	GGWCC	2 cut(s)	221, 330
XagI	CCTNNNNNAGG	1 cut(s)	194
XceI	RCATGY	1 cut(s)	379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	324
XmaI	CCCGGG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.