Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0015729

Physical Location & Seq

Genomic Coordinates Reverse (-)

26340121 .. 26341236

Gene Structure 1116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G011780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCAGAATGTAAGGAGAGTGGTTTCAGAGGCTGATGGTTATCAGCCTCACTTTATTGCCCCAGAGCAAGGTTACCACCACCTTATTGAGGGATCACTGAATTATTTTAGAGGCCCAGCTGAGGTTTCTGTTGATGCTGAATTGAGACAGTTTCCGACTCTGCAATCTGAAATAGCTGCTGCAGCTAATGAAGCATTGGAAAGGTTCCGTGATGAGAGTAAGAAGGCAGCTCTGCGCTTAGTGGACATGGAATCCTCATACTTGACTGTGGATCTCTTTCGAAGACTTCCACAGGAAGTGGAGAAACCAGTTGGCCCAGGAGGAAAACCAGGAAACCCGGGAGGATATCCAGCTGCCAATGCTGCTGTGGACCGCTATTCAGAGGGTCACTTTCAGAGGATAGGATCGAACATGTCCTCTTATGTGAGAATGGTGTCTGAGAGACTGAGGAATATGATTCCCAAGGCTGTCGTTCACTGTCAAGTCAGGGAGGCAAAAATTTCATTGCTAAATCACTTCTATTTAGAAAGAGAAAGGCTCTCTCTCTCTCTCTCTCTCTCAATACACACAAGCACACGCTCTTGGAGCTCATTGACTTCTAAGGGTCATGCAGTATATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

207

Amino Acids

23.26

Weight (kDa)

8.99

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GED	PF02212	127 - 174	8.4e-11	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0015729)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0335201 RchiOBHm_Chr1g0335211
rosa_multiflora	Rmu_sc0006746.1_g000019 Rmu_ssc0000259.1_g000039
rosa_rugosa	Rorug01G0121000
rosa_samantha	Rh1AG142100 Rh1AG142500 Rh1BG111000 Rh1CG134100 Rh1CG134400 Rh1CG134500 Rh1DG147100 Rh1DG147600 Rh1DG147900
rosa_wichuraiana	Rw1G011780 Rw1G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	373
AclWI	GGATC	3 cut(s)	100, 279, 412
AcsI	RAATTY	1 cut(s)	498
AfiI	CCNNNNNNNGG	3 cut(s)	68, 88, 121
AflIII	ACRYGT	1 cut(s)	411
AjnI	CCWGG	2 cut(s)	316, 328
AluBI	AGCT	6 cut(s)	119, 176, 185, 230, 353, 588
AluI	AGCT	6 cut(s)	119, 176, 185, 230, 353, 588
Alw21I	GWGCWC	1 cut(s)	590
Alw26I	GTCTC	2 cut(s)	139, 436
AlwI	GGATC	3 cut(s)	100, 279, 412
AlwNI	CAGNNNCTG	1 cut(s)	32
Ama87I	CYCGRG	1 cut(s)	337
AoxI	GGCC	2 cut(s)	112, 313
ApeKI	GCWGC	6 cut(s)	176, 179, 182, 227, 353, 362
ApoI	RAATTY	1 cut(s)	498
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	3 cut(s)	113, 314, 370
AsuC2I	CCSGG	2 cut(s)	338, 339
AsuII	TTCGAA	1 cut(s)	280
AvaI	CYCGRG	1 cut(s)	337
AvaII	GGWCC	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	590
BbsI	GAAGAC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	590
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	6 cut(s)	163, 166, 194, 239, 340, 349
BccI	CCATC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	318, 330
BcnI	CCSGG	2 cut(s)	338, 339
BcoDI	GTCTC	2 cut(s)	139, 436
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	6 cut(s)	177, 180, 183, 228, 354, 363
BlsI	GCNGC	6 cut(s)	178, 181, 184, 229, 355, 364
Bme1390I	CCNGG	4 cut(s)	318, 330, 338, 339
Bme18I	GGWCC	1 cut(s)	370
BmeT110I	CYCGRG	1 cut(s)	337
BmgT120I	GGNCC	3 cut(s)	113, 314, 370
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	4 cut(s)	318, 330, 338, 339
BmsI	GCATC	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	289
BplI	GAGNNNNNCTC	2 cut(s)	522, 554
Bpu10I	CCTNAGC	1 cut(s)	120
Bpu14I	TTCGAA	1 cut(s)	280
BpuMI	CCSGG	2 cut(s)	338, 339
BsaBI	GATNNNNATC	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	316, 337, 462
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 88, 121
Bse1I	ACTGG	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	503
Bse8I	GATNNNNATC	1 cut(s)	39
BseBI	CCWGG	2 cut(s)	318, 330
BseDI	CCNNGG	3 cut(s)	316, 337, 462
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	3 cut(s)	68, 88, 121
BseMI	GCAATG	1 cut(s)	503
BseMII	CTCAG	3 cut(s)	111, 429, 437
BseNI	ACTGG	1 cut(s)	308
BseXI	GCAGC	6 cut(s)	163, 166, 194, 239, 340, 349
BseYI	CCCAGC	1 cut(s)	115
BshFI	GGCC	2 cut(s)	114, 315
BsiHKAI	GWGCWC	1 cut(s)	590
BsiHKCI	CYCGRG	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	338
BslI	CCNNNNNNNGG	3 cut(s)	68, 88, 121
BsmAI	GTCTC	2 cut(s)	139, 436
BsnI	GGCC	2 cut(s)	114, 315
BsoBI	CYCGRG	1 cut(s)	337
Bsp119I	TTCGAA	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	590
Bsp143I	GATC	3 cut(s)	92, 271, 404
BspACI	CCGC	1 cut(s)	373
BspANI	GGCC	2 cut(s)	114, 315
BspCNI	CTCAG	3 cut(s)	112, 430, 438
BspLI	GGNNCC	1 cut(s)	206
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	3 cut(s)	100, 279, 412
BspT104I	TTCGAA	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	503
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	3 cut(s)	316, 337, 462
BssMI	GATC	3 cut(s)	92, 271, 404
BssT1I	CCWWGG	1 cut(s)	462
Bst2UI	CCWGG	2 cut(s)	318, 330
Bst4CI	ACNGT	3 cut(s)	150, 268, 479
BstBI	TTCGAA	1 cut(s)	280
BstDEI	CTNAG	5 cut(s)	120, 238, 438, 446, 600
BstEII	GGTNACC	1 cut(s)	71
BstENI	CCTNNNNNAGG	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	3 cut(s)	95, 274, 407
BstMAI	GTCTC	2 cut(s)	139, 436
BstMBI	GATC	3 cut(s)	92, 271, 404
BstMWI	GCNNNNNNNGC	5 cut(s)	182, 191, 359, 362, 585
BstNI	CCWGG	2 cut(s)	318, 330
BstNSI	RCATGY	1 cut(s)	415
BstPI	GGTNACC	1 cut(s)	71
BstSCI	CCNGG	4 cut(s)	316, 328, 336, 337
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	6 cut(s)	163, 166, 194, 239, 340, 349
BstV2I	GAAGAC	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	114, 315
BtsIMutI	CAGTG	2 cut(s)	95, 475
CaiI	CAGNNNCTG	1 cut(s)	32
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	3 cut(s)	113, 314, 370
Cfr9I	CCCGGG	1 cut(s)	337
CviAII	CATG	3 cut(s)	247, 412, 608
DdeI	CTNAG	5 cut(s)	120, 238, 438, 446, 600
DpnI	GATC	3 cut(s)	94, 273, 406
DpnII	GATC	3 cut(s)	92, 271, 404
Ecl136II	GAGCTC	1 cut(s)	588
Eco130I	CCWWGG	1 cut(s)	462
Eco24I	GRGCYC	1 cut(s)	590
Eco32I	GATATC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	370
Eco53kI	GAGCTC	1 cut(s)	588
Eco88I	CYCGRG	1 cut(s)	337
Eco91I	GGTNACC	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	588
EcoNI	CCTNNNNNAGG	1 cut(s)	86
EcoO65I	GGTNACC	1 cut(s)	71
EcoRII	CCWGG	2 cut(s)	316, 328
EcoRV	GATATC	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	590
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	3 cut(s)	250, 415, 611
FaiI	YATR	8 cut(s)	248, 259, 413, 423, 455, 609, 616, 618
FatI	CATG	3 cut(s)	246, 411, 607
Fnu4HI	GCNGC	6 cut(s)	177, 180, 183, 228, 354, 363
FriOI	GRGCYC	1 cut(s)	590
Fsp4HI	GCNGC	6 cut(s)	177, 180, 183, 228, 354, 363
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	6 cut(s)	177, 180, 183, 228, 354, 363
GsaI	CCCAGC	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	114, 315
HapII	CCGG	1 cut(s)	338
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	3 cut(s)	250, 415, 611
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HinfI	GANTC	3 cut(s)	157, 251, 457
HpaII	CCGG	1 cut(s)	338
Hpy166II	GTNNAC	3 cut(s)	244, 370, 475
Hpy188I	TCNGA	6 cut(s)	28, 156, 169, 382, 396, 439
Hpy8I	GTNNAC	3 cut(s)	244, 370, 475
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	3 cut(s)	150, 268, 479
HpyCH4V	TGCA	4 cut(s)	4, 163, 182, 611
HpyF10VI	GCNNNNNNNGC	5 cut(s)	182, 191, 359, 362, 585
HpyF3I	CTNAG	5 cut(s)	120, 238, 438, 446, 600
Hsp92II	CATG	3 cut(s)	250, 415, 611
HspAI	GCGC	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	92, 271, 404
LmnI	GCTCC	1 cut(s)	585
Lsp1109I	GCAGC	6 cut(s)	163, 166, 194, 239, 340, 349
LweI	GCATC	1 cut(s)	124
MaeIII	GTNAC	2 cut(s)	71, 386
MalI	GATC	3 cut(s)	94, 273, 406
MboI	GATC	3 cut(s)	92, 271, 404
MboII	GAAGA	1 cut(s)	294
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	590
MluCI	AATT	3 cut(s)	100, 140, 498
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	1 cut(s)	179
MspA1I	CMGCKG	2 cut(s)	119, 353
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	4 cut(s)	318, 330, 338, 339
MvaI	CCWGG	2 cut(s)	318, 330
MwoI	GCNNNNNNNGC	5 cut(s)	182, 191, 359, 362, 585
NciI	CCSGG	2 cut(s)	338, 339
NdeII	GATC	3 cut(s)	92, 271, 404
NlaIII	CATG	3 cut(s)	250, 415, 611
NlaIV	GGNNCC	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	386
NspI	RCATGY	1 cut(s)	415
NspV	TTCGAA	1 cut(s)	280
PciI	ACATGT	1 cut(s)	411
PfeI	GAWTC	2 cut(s)	251, 457
PkrI	GCNGC	6 cut(s)	178, 181, 184, 229, 355, 364
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PscI	ACATGT	1 cut(s)	411
Psp124BI	GAGCTC	1 cut(s)	590
Psp6I	CCWGG	2 cut(s)	316, 328
PspEI	GGTNACC	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	115
PspGI	CCWGG	2 cut(s)	316, 328
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	3 cut(s)	113, 314, 370
PstI	CTGCAG	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	271
PvuII	CAGCTG	2 cut(s)	119, 353
SacI	GAGCTC	1 cut(s)	590
SatI	GCNGC	6 cut(s)	177, 180, 183, 228, 354, 363
Sau3AI	GATC	3 cut(s)	92, 271, 404
Sau96I	GGNCC	3 cut(s)	113, 314, 370
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	4 cut(s)	318, 330, 338, 339
SduI	GDGCHC	1 cut(s)	590
SfaNI	GCATC	1 cut(s)	124
SfcI	CTRYAG	1 cut(s)	180
SfuI	TTCGAA	1 cut(s)	280
SinI	GGWCC	1 cut(s)	370
SmaI	CCCGGG	1 cut(s)	339
Sse9I	AATT	3 cut(s)	100, 140, 498
SsiI	CCGC	1 cut(s)	373
SstI	GAGCTC	1 cut(s)	590
StyD4I	CCNGG	4 cut(s)	316, 328, 336, 337
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	3 cut(s)	150, 268, 479
TaqI	TCGA	2 cut(s)	280, 407
TasI	AATT	3 cut(s)	100, 140, 498
TfiI	GAWTC	2 cut(s)	251, 457
TscAI	CASTG	2 cut(s)	102, 482
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	6 cut(s)	176, 179, 182, 227, 353, 362
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	2 cut(s)	204, 492
TspGWI	ACGGA	1 cut(s)	197
TspMI	CCCGGG	1 cut(s)	337
TspRI	CASTG	2 cut(s)	102, 482
VpaK11BI	GGWCC	1 cut(s)	370
XagI	CCTNNNNNAGG	1 cut(s)	86
XapI	RAATTY	1 cut(s)	498
XceI	RCATGY	1 cut(s)	415
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XmaI	CCCGGG	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.