Rorug01G0121000
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
21073602 .. 21073793
192 bp
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UTR
Exon/CDS
Intron
Rorug01G0121000.1

Sequence Viewer

Length: 192 bp
ATGATCCGAAGTACTGGGGTGACTCAAGATATACATTGTATTGTGAGAACAACATTACCGTATTATACCTGCATTCTGGAAAGTACTACGTGCAGGAAATCAATTACCTCAATCTTTTTTACAATGAAATCCAAGTCGTTGATCCTGGCATTCAGAGGAACAATTGCTCTTCCATTCCTCATTATTCTTTAG

Protein Analysis

63

Amino Acids

7.13

Weight (kDa)

9.65

Isoelectric Point (pI)

35.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 77
AclWI GGATC 1 cut(s) 136
AfaI GTAC 2 cut(s) 13, 85
AjnI CCWGG 1 cut(s) 144
AlwI GGATC 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 146
BfuAI ACCTGC 1 cut(s) 77
BmcAI AGTACT 2 cut(s) 13, 85
Bme1390I CCNGG 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 146
BmrI ACTGGG 1 cut(s) 24
BmuI ACTGGG 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 9
BsaAI YACGTR 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 146
BseNI ACTGG 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 112
BsmI GAATGC 2 cut(s) 72, 149
Bsp143I GATC 2 cut(s) 3, 141
BspMI ACCTGC 1 cut(s) 77
BspPI GGATC 1 cut(s) 136
BspQI GCTCTTC 1 cut(s) 174
BsrI ACTGG 1 cut(s) 19
BssMI GATC 2 cut(s) 3, 141
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 174
BstBAI YACGTR 1 cut(s) 90
BstKTI GATC 2 cut(s) 6, 144
BstMBI GATC 2 cut(s) 3, 141
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BveI ACCTGC 1 cut(s) 77
Csp6I GTAC 2 cut(s) 12, 84
CviQI GTAC 2 cut(s) 12, 84
DpnI GATC 2 cut(s) 5, 143
DpnII GATC 2 cut(s) 3, 141
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 144
FaiI YATR 2 cut(s) 32, 66
HinfI GANTC 1 cut(s) 22
HphI GGTGA 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 8, 155
Hpy188III TCNNGA 2 cut(s) 26, 77
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 2 cut(s) 72, 93
HpySE526I ACGT 1 cut(s) 89
Kzo9I GATC 2 cut(s) 3, 141
LguI GCTCTTC 1 cut(s) 174
LpnPI CCDG 5 cut(s) 62, 79, 82, 131, 158
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 19
MalI GATC 2 cut(s) 5, 143
MboI GATC 2 cut(s) 3, 141
MboII GAAGA 1 cut(s) 161
MfeI CAATTG 1 cut(s) 162
MluCI AATT 2 cut(s) 102, 162
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 3 cut(s) 118, 149, 188
MspR9I CCNGG 1 cut(s) 146
MunI CAATTG 1 cut(s) 162
Mva1269I GAATGC 2 cut(s) 72, 149
MvaI CCWGG 1 cut(s) 146
NdeII GATC 2 cut(s) 3, 141
NmuCI GTSAC 1 cut(s) 19
PciSI GCTCTTC 1 cut(s) 174
PctI GAATGC 2 cut(s) 72, 149
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Ppu21I YACGTR 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
RsaI GTAC 2 cut(s) 13, 85
RsaNI GTAC 2 cut(s) 12, 84
SapI GCTCTTC 1 cut(s) 174
Sau3AI GATC 2 cut(s) 3, 141
ScaI AGTACT 2 cut(s) 13, 85
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 146
SetI ASST 3 cut(s) 71, 92, 110
SgeI CNNG 9 cut(s) 27, 38, 81, 89, 102, 106, 145, 157, 158
SmlI CTYRAG 1 cut(s) 24
SmoI CTYRAG 1 cut(s) 24
Sse9I AATT 2 cut(s) 102, 162
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 60
TaiI ACGT 1 cut(s) 92
TasI AATT 2 cut(s) 102, 162
TatI WGTACW 2 cut(s) 11, 83
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 140
ZrmI AGTACT 2 cut(s) 13, 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.