Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0015729

Physical Location & Seq

Genomic Coordinates Reverse (-)

29456882 .. 29460431

Gene Structure 3550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG134500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAGCCAGAACTTGATCAGGCACTGGTTAAAACAAGAAGAAGCCAACCAATCGCTACATCTGATGCTACCGAACTTGCATGGGAAGTGGATGCAGCAGGTGAACGAACGTTTGGGGTGATGACAAAGCTTGATTTGATGGGCAAAGGAACTAATATTATGGATGGGGAAAGGAACTTGCATTACCCGCGACCCGGAGGTTATAGGATGTATGGTGTCTTTGACAACCAGCTGCCTGCTGCTTTGAGGAGGCTTCCATTTGATCGACATCTGTCTATGCAGAATGTAAGGAGAGTGGTTTCAGAGGCTGATGGTTATCAGCCTCACTTAATTGCCCCAGAGCAAGGTTACCGTCGCCTTACTGAGGGATCACTGAATTATTTTAGAGGTCCAGGTCCACTTTGTCTTGAAAGAACTTTTATTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

142

Amino Acids

16.16

Weight (kDa)

6.84

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	51 - 137	3.3e-07	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015729)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0335201 RchiOBHm_Chr1g0335211
rosa_multiflora	Rmu_sc0006746.1_g000019 Rmu_ssc0000259.1_g000039
rosa_rugosa	Rorug01G0121000
rosa_samantha	Rh1AG142100 Rh1AG142500 Rh1BG111000 Rh1CG134100 Rh1CG134400 Rh1CG134500 Rh1DG147100 Rh1DG147600 Rh1DG147900
rosa_wichuraiana	Rw1G011780 Rw1G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	89
Acc36I	ACCTGC	1 cut(s)	89
AccII	CGCG	1 cut(s)	190
AciI	CCGC	1 cut(s)	188
AclI	AACGTT	1 cut(s)	110
AclWI	GGATC	1 cut(s)	376
AfiI	CCNNNNNNNGG	3 cut(s)	194, 344, 364
AgsI	TTSAA	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	391
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AluBI	AGCT	2 cut(s)	130, 232
AluI	AGCT	2 cut(s)	130, 232
AlwI	GGATC	1 cut(s)	376
AlwNI	CAGNNNCTG	2 cut(s)	25, 308
ApeKI	GCWGC	3 cut(s)	95, 232, 239
AspS9I	GGNCC	2 cut(s)	389, 395
AsuC2I	CCSGG	1 cut(s)	195
AsuHPI	GGTGA	2 cut(s)	113, 130
AvaII	GGWCC	2 cut(s)	389, 395
BbvI	GCAGC	3 cut(s)	107, 219, 226
BccI	CCATC	3 cut(s)	133, 158, 305
BciT130I	CCWGG	1 cut(s)	393
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	89
BisI	GCNGC	3 cut(s)	96, 233, 240
BlsI	GCNGC	3 cut(s)	97, 234, 241
Bme1390I	CCNGG	2 cut(s)	195, 393
Bme18I	GGWCC	2 cut(s)	389, 395
BmgT120I	GGNCC	2 cut(s)	389, 395
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	195, 393
BmsI	GCATC	2 cut(s)	55, 82
BoxI	GACNNNNGTC	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	195
BsaBI	GATNNNNATC	2 cut(s)	267, 315
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 344, 364
Bse1I	ACTGG	1 cut(s)	30
Bse8I	GATNNNNATC	2 cut(s)	267, 315
BseBI	CCWGG	1 cut(s)	393
BseGI	GGATG	3 cut(s)	97, 169, 213
BseJI	GATNNNNATC	2 cut(s)	267, 315
BseLI	CCNNNNNNNGG	3 cut(s)	194, 344, 364
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	262
BseXI	GCAGC	3 cut(s)	107, 219, 226
Bsh1236I	CGCG	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	3 cut(s)	194, 344, 364
Bsp143I	GATC	3 cut(s)	16, 262, 368
BspACI	CCGC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	355
BspFNI	CGCG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	30
BssMI	GATC	3 cut(s)	16, 262, 368
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	363
BstEII	GGTNACC	1 cut(s)	347
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	3 cut(s)	97, 169, 213
BstFNI	CGCG	1 cut(s)	190
BstKTI	GATC	3 cut(s)	19, 265, 371
BstMBI	GATC	3 cut(s)	16, 262, 368
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	393
BstPAI	GACNNNNGTC	1 cut(s)	271
BstPI	GGTNACC	1 cut(s)	347
BstSCI	CCNGG	2 cut(s)	193, 391
BstUI	CGCG	1 cut(s)	190
BstV1I	GCAGC	3 cut(s)	107, 219, 226
BtsCI	GGATG	3 cut(s)	97, 169, 213
BtsIMutI	CAGTG	2 cut(s)	23, 371
BveI	ACCTGC	1 cut(s)	89
Cac8I	GCNNGC	1 cut(s)	237
CaiI	CAGNNNCTG	2 cut(s)	25, 308
Cfr13I	GGNCC	2 cut(s)	389, 395
CviAII	CATG	1 cut(s)	81
CviJI	RGCY	7 cut(s)	7, 45, 130, 232, 253, 308, 322
CviKI_1	RGCY	7 cut(s)	7, 45, 130, 232, 253, 308, 322
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	3 cut(s)	18, 264, 370
DpnII	GATC	3 cut(s)	16, 262, 368
Eco47I	GGWCC	2 cut(s)	389, 395
Eco91I	GGTNACC	1 cut(s)	347
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoO65I	GGTNACC	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	391
FaeI	CATG	1 cut(s)	84
FaiI	YATR	5 cut(s)	82, 161, 204, 213, 278
FatI	CATG	1 cut(s)	80
FauI	CCCGC	1 cut(s)	195
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	3 cut(s)	96, 233, 240
FokI	GGATG	3 cut(s)	104, 176, 220
Fsp4HI	GCNGC	3 cut(s)	96, 233, 240
GluI	GCNGC	3 cut(s)	96, 233, 240
HapII	CCGG	1 cut(s)	195
Hin1II	CATG	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	128
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	2 cut(s)	113, 130
Hpy166II	GTNNAC	2 cut(s)	104, 398
Hpy188I	TCNGA	2 cut(s)	64, 304
Hpy188III	TCNNGA	1 cut(s)	407
Hpy8I	GTNNAC	2 cut(s)	104, 398
Hpy99I	CGWCG	1 cut(s)	357
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	4 cut(s)	80, 95, 181, 280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	16, 262, 368
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	3 cut(s)	107, 219, 226
LweI	GCATC	2 cut(s)	55, 82
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	3 cut(s)	18, 264, 370
MboI	GATC	3 cut(s)	16, 262, 368
MboII	GAAGA	1 cut(s)	51
MluCI	AATT	2 cut(s)	330, 376
MnlI	CCTC	7 cut(s)	191, 240, 243, 298, 333, 358, 380
MseI	TTAA	2 cut(s)	30, 329
MspA1I	CMGCKG	1 cut(s)	232
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	195, 393
MvaI	CCWGG	1 cut(s)	393
MvnI	CGCG	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	187
NciI	CCSGG	1 cut(s)	195
NdeII	GATC	3 cut(s)	16, 262, 368
NlaIII	CATG	1 cut(s)	84
NlaIV	GGNNCC	1 cut(s)	6
PaqCI	CACCTGC	1 cut(s)	89
PkrI	GCNGC	3 cut(s)	97, 234, 241
PshAI	GACNNNNGTC	1 cut(s)	271
Psp1406I	AACGTT	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	391
PspEI	GGTNACC	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	389, 395
PsrI	GAACNNNNNNTAC	2 cut(s)	167, 199
PstNI	CAGNNNCTG	2 cut(s)	25, 308
PvuII	CAGCTG	1 cut(s)	232
SaqAI	TTAA	2 cut(s)	30, 329
SatI	GCNGC	3 cut(s)	96, 233, 240
Sau3AI	GATC	3 cut(s)	16, 262, 368
Sau96I	GGNCC	2 cut(s)	389, 395
ScrFI	CCNGG	2 cut(s)	195, 393
SetI	ASST	8 cut(s)	103, 113, 132, 202, 234, 349, 391, 397
SfaNI	GCATC	2 cut(s)	55, 82
SinI	GGWCC	2 cut(s)	389, 395
Sse9I	AATT	2 cut(s)	330, 376
SsiI	CCGC	1 cut(s)	188
SspI	AATATT	1 cut(s)	157
StyD4I	CCNGG	2 cut(s)	193, 391
TaaI	ACNGT	1 cut(s)	353
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	265
TasI	AATT	2 cut(s)	330, 376
Tru1I	TTAA	2 cut(s)	30, 329
Tru9I	TTAA	2 cut(s)	30, 329
TscAI	CASTG	2 cut(s)	30, 378
TseI	GCWGC	3 cut(s)	95, 232, 239
TspRI	CASTG	2 cut(s)	30, 378
VpaK11BI	GGWCC	2 cut(s)	389, 395
XagI	CCTNNNNNAGG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.