Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0015729

Physical Location & Seq

Genomic Coordinates Reverse (-)

30968079 .. 30969212

Gene Structure 1134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG147900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGACAAAGCTTGATTTCATGGGCAAAGGAACTAATATTATGGATGGGCAAAGGAACTTGCATTACCCGCGACCCGGAGGTTATAGGATGTATGGTGTCTTTGACAACCAGCTGCCTGCTGCTTTGAGGAGGCTTCCATTTGATCGACATCTGTCTATGCAGAATGTAAGGAGAGTGGTTTCAGAGGCTGATGGTTATCAGCCTCACTTAATTGCCCCAGAGCAAGGTTACCGCCGCCTTACTGAGGGATCACTGAATTATTTTAGAGGTCCAGGTGAGGTTTCTGTCGATGCTGAATTGAGACGGTTTTCCGACTCTGCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

108

Amino Acids

12.35

Weight (kDa)

9.51

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	9 - 92	3.3e-07	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015729)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0335201 RchiOBHm_Chr1g0335211
rosa_multiflora	Rmu_sc0006746.1_g000019 Rmu_ssc0000259.1_g000039
rosa_rugosa	Rorug01G0121000
rosa_samantha	Rh1AG142100 Rh1AG142500 Rh1BG111000 Rh1CG134100 Rh1CG134400 Rh1CG134500 Rh1DG147100 Rh1DG147600 Rh1DG147900
rosa_wichuraiana	Rw1G011780 Rw1G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	70
AciI	CCGC	3 cut(s)	68, 232, 235
AclWI	GGATC	1 cut(s)	256
AfiI	CCNNNNNNNGG	3 cut(s)	74, 224, 244
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	3 cut(s)	10, 112, 324
AluI	AGCT	3 cut(s)	10, 112, 324
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	1 cut(s)	256
AlwNI	CAGNNNCTG	1 cut(s)	188
ApeKI	GCWGC	2 cut(s)	112, 119
AspS9I	GGNCC	1 cut(s)	269
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	269
BbvI	GCAGC	2 cut(s)	99, 106
BccI	CCATC	2 cut(s)	38, 185
BciT130I	CCWGG	1 cut(s)	273
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	295
BisI	GCNGC	3 cut(s)	113, 120, 235
BlsI	GCNGC	3 cut(s)	114, 121, 236
Bme1390I	CCNGG	2 cut(s)	75, 273
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmrFI	CCNGG	2 cut(s)	75, 273
BmsI	GCATC	1 cut(s)	280
BoxI	GACNNNNGTC	1 cut(s)	151
BpuMI	CCSGG	1 cut(s)	75
BsaBI	GATNNNNATC	2 cut(s)	147, 195
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 224, 244
Bse8I	GATNNNNATC	2 cut(s)	147, 195
BseBI	CCWGG	1 cut(s)	273
BseGI	GGATG	2 cut(s)	49, 93
BseJI	GATNNNNATC	2 cut(s)	147, 195
BseLI	CCNNNNNNNGG	3 cut(s)	74, 224, 244
BseMII	CTCAG	1 cut(s)	234
BseRI	GAGGAG	1 cut(s)	142
BseXI	GCAGC	2 cut(s)	99, 106
Bsh1236I	CGCG	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	75
BslI	CCNNNNNNNGG	3 cut(s)	74, 224, 244
BsmAI	GTCTC	1 cut(s)	295
BsmBI	CGTCTC	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	142, 248
BspACI	CCGC	3 cut(s)	68, 232, 235
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	70
BspPI	GGATC	1 cut(s)	256
BssMI	GATC	2 cut(s)	142, 248
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	117, 322
BstDEI	CTNAG	1 cut(s)	243
BstEII	GGTNACC	1 cut(s)	227
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	49, 93
BstFNI	CGCG	1 cut(s)	70
BstKTI	GATC	2 cut(s)	145, 251
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	2 cut(s)	142, 248
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	273
BstPAI	GACNNNNGTC	1 cut(s)	151
BstPI	GGTNACC	1 cut(s)	227
BstSCI	CCNGG	2 cut(s)	73, 271
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	99, 106
BtsCI	GGATG	2 cut(s)	49, 93
BtsIMutI	CAGTG	1 cut(s)	251
Cac8I	GCNNGC	2 cut(s)	117, 322
CaiI	CAGNNNCTG	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	269
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	6 cut(s)	10, 112, 133, 188, 202, 324
CviKI_1	RGCY	6 cut(s)	10, 112, 133, 188, 202, 324
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	2 cut(s)	144, 250
DpnII	GATC	2 cut(s)	142, 248
Eco47I	GGWCC	1 cut(s)	269
Eco91I	GGTNACC	1 cut(s)	227
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoO65I	GGTNACC	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	271
Esp3I	CGTCTC	1 cut(s)	295
FaeI	CATG	1 cut(s)	22
FaiI	YATR	5 cut(s)	20, 41, 84, 93, 158
FatI	CATG	1 cut(s)	18
FauI	CCCGC	1 cut(s)	75
Fnu4HI	GCNGC	3 cut(s)	113, 120, 235
FokI	GGATG	2 cut(s)	56, 100
Fsp4HI	GCNGC	3 cut(s)	113, 120, 235
GluI	GCNGC	3 cut(s)	113, 120, 235
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	287
Hpy188I	TCNGA	2 cut(s)	184, 313
HpyCH4III	ACNGT	1 cut(s)	306
HpyCH4V	TGCA	3 cut(s)	61, 160, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	1 cut(s)	22
Kzo9I	GATC	2 cut(s)	142, 248
LpnPI	CCDG	6 cut(s)	88, 122, 129, 231, 258, 285
Lsp1109I	GCAGC	2 cut(s)	99, 106
LweI	GCATC	1 cut(s)	280
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	2 cut(s)	144, 250
MboI	GATC	2 cut(s)	142, 248
MluCI	AATT	3 cut(s)	210, 256, 296
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	8 cut(s)	71, 120, 123, 178, 213, 238, 260, 271
MseI	TTAA	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	112
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	2 cut(s)	75, 273
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	75
NdeII	GATC	2 cut(s)	142, 248
NlaIII	CATG	1 cut(s)	22
PkrI	GCNGC	3 cut(s)	114, 121, 236
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
PshAI	GACNNNNGTC	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	271
PspEI	GGTNACC	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	269
PsrI	GAACNNNNNNTAC	2 cut(s)	47, 79
PstNI	CAGNNNCTG	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	3 cut(s)	113, 120, 235
Sau3AI	GATC	2 cut(s)	142, 248
Sau96I	GGNCC	1 cut(s)	269
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	2 cut(s)	75, 273
SetI	ASST	8 cut(s)	12, 82, 114, 229, 271, 277, 282, 326
SfaNI	GCATC	1 cut(s)	280
SinI	GGWCC	1 cut(s)	269
Sse9I	AATT	3 cut(s)	210, 256, 296
SsiI	CCGC	3 cut(s)	68, 232, 235
SspI	AATATT	1 cut(s)	37
StyD4I	CCNGG	2 cut(s)	73, 271
TaaI	ACNGT	1 cut(s)	306
TaqI	TCGA	2 cut(s)	145, 288
TasI	AATT	3 cut(s)	210, 256, 296
TauI	GCSGC	1 cut(s)	237
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TscAI	CASTG	1 cut(s)	258
TseI	GCWGC	2 cut(s)	112, 119
TspDTI	ATGAA	1 cut(s)	7
TspRI	CASTG	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	269
XagI	CCTNNNNNAGG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.