Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0015729

Physical Location & Seq

Genomic Coordinates Reverse (-)

29404450 .. 29404884

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG134100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAAGCATTGGAAAGGTTCCGTGATGAGTAAGAAGGCAGCTCTGCGCTTAGTGGACATGGAATCCTCATACTTGACTGTGGATCTCTTTCGAAGACTTTCACAGGAAGTGGAGAAACCAGTTGGCCCAGGAGGAAAACCAGGAAACCCGGGAGGATATCCAGCTGCCAATGCTGCTGTGGACCGCTATTCAGAGGGTCACTTTCAGAGGATAGGATCAAACATGTCCTCTTATGTGAGAATGGTGTCTGAGAGACTGAGGAATATGATTCCCAAGGCTGTCGTTCACTGTCAAGTCAGGGAGGCAAAAATGTCATTGCTAAATCACTTCTATTTAGAAAGAGAAAGGCTCTCTCTCGCTCTCTCTCTCTCAATACACACAAGCACACGCTCTTGGAGCTCATTGACTTCTAAGGGTCATGCAGTATATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

144

Amino Acids

16.18

Weight (kDa)

10.1

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GED	PF02212	64 - 111	2.8e-11	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015729)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0335201 RchiOBHm_Chr1g0335211
rosa_multiflora	Rmu_sc0006746.1_g000019 Rmu_ssc0000259.1_g000039
rosa_rugosa	Rorug01G0121000
rosa_samantha	Rh1AG142100 Rh1AG142500 Rh1BG111000 Rh1CG134100 Rh1CG134400 Rh1CG134500 Rh1DG147100 Rh1DG147600 Rh1DG147900
rosa_wichuraiana	Rw1G011780 Rw1G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	184
AclWI	GGATC	2 cut(s)	90, 223
AflIII	ACRYGT	1 cut(s)	222
AjnI	CCWGG	2 cut(s)	127, 139
AluBI	AGCT	3 cut(s)	41, 164, 399
AluI	AGCT	3 cut(s)	41, 164, 399
Alw21I	GWGCWC	1 cut(s)	401
Alw26I	GTCTC	1 cut(s)	247
AlwI	GGATC	2 cut(s)	90, 223
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	3 cut(s)	38, 164, 173
Asp700I	GAANNNNTTC	1 cut(s)	97
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	2 cut(s)	125, 181
AsuC2I	CCSGG	2 cut(s)	149, 150
AsuII	TTCGAA	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	3 cut(s)	50, 151, 160
BciT130I	CCWGG	2 cut(s)	129, 141
BcnI	CCSGG	2 cut(s)	149, 150
BcoDI	GTCTC	1 cut(s)	247
BisI	GCNGC	3 cut(s)	39, 165, 174
BlsI	GCNGC	3 cut(s)	40, 166, 175
Bme1390I	CCNGG	4 cut(s)	129, 141, 149, 150
Bme18I	GGWCC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	125, 181
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	4 cut(s)	129, 141, 149, 150
BpiI	GAAGAC	1 cut(s)	100
BplI	GAGNNNNNCTC	2 cut(s)	333, 365
Bpu14I	TTCGAA	1 cut(s)	91
BpuMI	CCSGG	2 cut(s)	149, 150
BsaJI	CCNNGG	3 cut(s)	127, 148, 273
Bse1I	ACTGG	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	314
BseBI	CCWGG	2 cut(s)	129, 141
BseDI	CCNNGG	3 cut(s)	127, 148, 273
BseMI	GCAATG	1 cut(s)	314
BseMII	CTCAG	2 cut(s)	240, 248
BseNI	ACTGG	1 cut(s)	119
BseXI	GCAGC	3 cut(s)	50, 151, 160
BshFI	GGCC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	401
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	126
BsoBI	CYCGRG	1 cut(s)	148
Bsp119I	TTCGAA	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	2 cut(s)	82, 215
BspACI	CCGC	1 cut(s)	184
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	2 cut(s)	241, 249
BspLI	GGNNCC	1 cut(s)	19
BspPI	GGATC	2 cut(s)	90, 223
BspT104I	TTCGAA	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	127, 148, 273
BssMI	GATC	2 cut(s)	82, 215
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	2 cut(s)	129, 141
Bst4CI	ACNGT	2 cut(s)	79, 290
BstBI	TTCGAA	1 cut(s)	91
BstDEI	CTNAG	4 cut(s)	49, 249, 257, 411
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	2 cut(s)	85, 218
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	2 cut(s)	82, 215
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 173, 396
BstNI	CCWGG	2 cut(s)	129, 141
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	4 cut(s)	127, 139, 147, 148
BstV1I	GCAGC	3 cut(s)	50, 151, 160
BstV2I	GAAGAC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	286
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	125, 181
Cfr9I	CCCGGG	1 cut(s)	148
CviAII	CATG	3 cut(s)	58, 223, 419
CviJI	RGCY	6 cut(s)	41, 126, 164, 278, 349, 399
CviKI_1	RGCY	6 cut(s)	41, 126, 164, 278, 349, 399
DdeI	CTNAG	4 cut(s)	49, 249, 257, 411
DpnI	GATC	2 cut(s)	84, 217
DpnII	GATC	2 cut(s)	82, 215
Ecl136II	GAGCTC	1 cut(s)	399
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	401
Eco32I	GATATC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	399
EcoRII	CCWGG	2 cut(s)	127, 139
EcoRV	GATATC	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	3 cut(s)	61, 226, 422
FaiI	YATR	8 cut(s)	59, 70, 224, 234, 266, 420, 427, 429
FatI	CATG	3 cut(s)	57, 222, 418
Fnu4HI	GCNGC	3 cut(s)	39, 165, 174
FriOI	GRGCYC	1 cut(s)	401
Fsp4HI	GCNGC	3 cut(s)	39, 165, 174
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	3 cut(s)	39, 165, 174
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	1 cut(s)	149
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	3 cut(s)	61, 226, 422
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HinfI	GANTC	2 cut(s)	62, 268
HpaII	CCGG	1 cut(s)	149
Hpy166II	GTNNAC	3 cut(s)	55, 181, 286
Hpy188I	TCNGA	3 cut(s)	193, 207, 250
Hpy8I	GTNNAC	3 cut(s)	55, 181, 286
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	2 cut(s)	79, 290
HpyCH4V	TGCA	1 cut(s)	422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 173, 396
HpyF3I	CTNAG	4 cut(s)	49, 249, 257, 411
Hsp92II	CATG	3 cut(s)	61, 226, 422
HspAI	GCGC	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	82, 215
LmnI	GCTCC	1 cut(s)	396
LpnPI	CCDG	9 cut(s)	89, 114, 126, 132, 141, 153, 162, 174, 283
Lsp1109I	GCAGC	3 cut(s)	50, 151, 160
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	2 cut(s)	84, 217
MboI	GATC	2 cut(s)	82, 215
MboII	GAAGA	1 cut(s)	105
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	401
MnlI	CCTC	8 cut(s)	76, 125, 146, 187, 201, 238, 252, 295
MroXI	GAANNNNTTC	1 cut(s)	97
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	4 cut(s)	129, 141, 149, 150
MvaI	CCWGG	2 cut(s)	129, 141
MwoI	GCNNNNNNNGC	3 cut(s)	170, 173, 396
NciI	CCSGG	2 cut(s)	149, 150
NdeII	GATC	2 cut(s)	82, 215
NlaIII	CATG	3 cut(s)	61, 226, 422
NlaIV	GGNNCC	1 cut(s)	19
NmuCI	GTSAC	1 cut(s)	197
NspI	RCATGY	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	91
PciI	ACATGT	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	62, 268
PkrI	GCNGC	3 cut(s)	40, 166, 175
PscI	ACATGT	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	401
Psp6I	CCWGG	2 cut(s)	127, 139
PspGI	CCWGG	2 cut(s)	127, 139
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	2 cut(s)	125, 181
PsuI	RGATCY	1 cut(s)	82
PvuII	CAGCTG	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	401
SatI	GCNGC	3 cut(s)	39, 165, 174
Sau3AI	GATC	2 cut(s)	82, 215
Sau96I	GGNCC	2 cut(s)	125, 181
ScrFI	CCNGG	4 cut(s)	129, 141, 149, 150
SduI	GDGCHC	1 cut(s)	401
SetI	ASST	4 cut(s)	19, 43, 166, 401
SfuI	TTCGAA	1 cut(s)	91
SinI	GGWCC	1 cut(s)	181
SmaI	CCCGGG	1 cut(s)	150
SsiI	CCGC	1 cut(s)	184
SstI	GAGCTC	1 cut(s)	401
StyD4I	CCNGG	4 cut(s)	127, 139, 147, 148
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	79, 290
TaqI	TCGA	1 cut(s)	91
TfiI	GAWTC	2 cut(s)	62, 268
TscAI	CASTG	1 cut(s)	293
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	3 cut(s)	38, 164, 173
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	10
TspMI	CCCGGG	1 cut(s)	148
TspRI	CASTG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	181
XceI	RCATGY	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmaI	CCCGGG	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.