Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000259.1

Orthogroup ID

OG0015729

Physical Location & Seq

Genomic Coordinates Reverse (-)

178902 .. 179804

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000259.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atgacaggcgacccggaggtgataggatttatggtgtcttttacaaccagctgcctgctgcatgctttgagaaagctttcatttgatcgacatctgtctatgcagaatgtaaggaaagtggtttcagaggctgatggttatcagcctcacttgattgccccagagcaaggttaccgccgccttattgagggatcactgaattactttagaggtccagctgaggcttctgtggatactggtaagcagttaggtcagctgcttgacgaagacccagcattgatggagaggaggctacagtgtgctaaaaggcttgaattatacaagtcagctagggatgaggttgattctgtatcatgggtcggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

121

Amino Acids

13.64

Weight (kDa)

5.9

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015729)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0335201 RchiOBHm_Chr1g0335211
rosa_multiflora	Rmu_sc0006746.1_g000019 Rmu_ssc0000259.1_g000039
rosa_rugosa	Rorug01G0121000
rosa_samantha	Rh1AG142100 Rh1AG142500 Rh1BG111000 Rh1CG134100 Rh1CG134400 Rh1CG134500 Rh1DG147100 Rh1DG147600 Rh1DG147900
rosa_wichuraiana	Rw1G011780 Rw1G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	175, 178
AclWI	GGATC	1 cut(s)	199
AfiI	CCNNNNNNNGG	2 cut(s)	167, 187
AgsI	TTSAA	1 cut(s)	314
AluBI	AGCT	5 cut(s)	51, 76, 218, 256, 329
AluI	AGCT	5 cut(s)	51, 76, 218, 256, 329
AlwI	GGATC	1 cut(s)	199
AlwNI	CAGNNNCTG	1 cut(s)	131
ApeKI	GCWGC	3 cut(s)	51, 58, 256
Asp700I	GAANNNNTTC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	273
BbvCI	CCTCAGC	1 cut(s)	219
BbvI	GCAGC	3 cut(s)	38, 45, 243
BccI	CCATC	2 cut(s)	128, 274
BciVI	GTATCC	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	14
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	226
BisI	GCNGC	4 cut(s)	52, 59, 178, 257
BlsI	GCNGC	4 cut(s)	53, 60, 179, 258
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	14
BoxI	GACNNNNGTC	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	14
BsaBI	GATNNNNATC	2 cut(s)	90, 138
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 187
Bse1I	ACTGG	1 cut(s)	241
Bse8I	GATNNNNATC	2 cut(s)	90, 138
BseGI	GGATG	1 cut(s)	340
BseJI	GATNNNNATC	2 cut(s)	90, 138
BseLI	CCNNNNNNNGG	2 cut(s)	167, 187
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	1 cut(s)	301
BseXI	GCAGC	3 cut(s)	38, 45, 243
BseYI	CCCAGC	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	14
BslI	CCNNNNNNNGG	2 cut(s)	167, 187
Bsp143I	GATC	2 cut(s)	85, 191
BspACI	CCGC	2 cut(s)	175, 178
BspCNI	CTCAG	1 cut(s)	211
BspPI	GGATC	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	241
BssMI	GATC	2 cut(s)	85, 191
Bst4CI	ACNGT	1 cut(s)	297
BstC8I	GCNNGC	2 cut(s)	56, 63
BstDEI	CTNAG	1 cut(s)	219
BstEII	GGTNACC	1 cut(s)	170
BstENI	CCTNNNNNAGG	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	2 cut(s)	88, 194
BstMBI	GATC	2 cut(s)	85, 191
BstNSI	RCATGY	1 cut(s)	65
BstPAI	GACNNNNGTC	1 cut(s)	94
BstPI	GGTNACC	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	12
BstSFI	CTRYAG	1 cut(s)	293
BstV1I	GCAGC	3 cut(s)	38, 45, 243
BstV2I	GAAGAC	1 cut(s)	273
BsuI	GTATCC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	2 cut(s)	194, 302
Cac8I	GCNNGC	2 cut(s)	56, 63
CaiI	CAGNNNCTG	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	212
CviAII	CATG	2 cut(s)	62, 354
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	2 cut(s)	87, 193
DpnII	GATC	2 cut(s)	85, 191
Eco47I	GGWCC	1 cut(s)	212
Eco91I	GGTNACC	1 cut(s)	170
EcoNI	CCTNNNNNAGG	1 cut(s)	185
EcoO65I	GGTNACC	1 cut(s)	170
FaeI	CATG	2 cut(s)	65, 357
FaiI	YATR	5 cut(s)	32, 63, 101, 319, 355
FatI	CATG	2 cut(s)	61, 353
Fnu4HI	GCNGC	4 cut(s)	52, 59, 178, 257
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	4 cut(s)	52, 59, 178, 257
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	4 cut(s)	52, 59, 178, 257
GsaI	CCCAGC	1 cut(s)	275
HapII	CCGG	1 cut(s)	14
Hin1II	CATG	2 cut(s)	65, 357
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	1 cut(s)	344
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4V	TGCA	2 cut(s)	61, 103
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	65, 357
Kzo9I	GATC	2 cut(s)	85, 191
LpnPI	CCDG	7 cut(s)	27, 61, 68, 174, 222, 228, 285
Lsp1109I	GCAGC	3 cut(s)	38, 45, 243
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	2 cut(s)	87, 193
MboI	GATC	2 cut(s)	85, 191
MboII	GAAGA	1 cut(s)	278
MluCI	AATT	2 cut(s)	199, 314
MnlI	CCTC	9 cut(s)	10, 121, 156, 181, 203, 214, 279, 282, 331
MroXI	GAANNNNTTC	1 cut(s)	76
MspA1I	CMGCKG	3 cut(s)	51, 218, 256
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	14
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	2 cut(s)	85, 191
NlaIII	CATG	2 cut(s)	65, 357
NspI	RCATGY	1 cut(s)	65
PaeI	GCATGC	1 cut(s)	65
PdmI	GAANNNNTTC	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	4 cut(s)	53, 60, 179, 258
PshAI	GACNNNNGTC	1 cut(s)	94
PspEI	GGTNACC	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	212
PstNI	CAGNNNCTG	1 cut(s)	131
PvuII	CAGCTG	3 cut(s)	51, 218, 256
SatI	GCNGC	4 cut(s)	52, 59, 178, 257
Sau3AI	GATC	2 cut(s)	85, 191
Sau96I	GGNCC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	212
SphI	GCATGC	1 cut(s)	65
Sse9I	AATT	2 cut(s)	199, 314
SsiI	CCGC	2 cut(s)	175, 178
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	297
TaqI	TCGA	1 cut(s)	88
TasI	AATT	2 cut(s)	199, 314
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	1 cut(s)	344
TscAI	CASTG	2 cut(s)	201, 302
TseI	GCWGC	3 cut(s)	51, 58, 256
TspDTI	ATGAA	1 cut(s)	69
TspRI	CASTG	2 cut(s)	201, 302
VpaK11BI	GGWCC	1 cut(s)	212
XagI	CCTNNNNNAGG	1 cut(s)	185
XceI	RCATGY	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	76
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.