Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0015729

Physical Location & Seq

Genomic Coordinates Reverse (-)

30886163 .. 30886513

Gene Structure 351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG147600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGAATCCTCATACTTGACTGTGGATCTCTTTCGAAGACTTCCACAGGAAGTGGAGAAACCAGTTGGCCCAGGAGGAAAACCAGGAAACCCGGGAGGATATCCAGCTGCCAATGCTGCTGTGGACCGCTATTCAGAGGGTCACTTTCAGAGGATAGGATCGAACATGTCCTCTTATGTGAGAATGGTGTCTGAGACACTGAGGAATACAATTCCCAAGGCTGTCGTTCACTGTCAAGTCAGGGAGGCAAAAATGTCATTGCTAAATCACTTCTATTTAGAAAGAGAAAGGCTCTCTCTCTCGCTCTCTCTCTCTCAATACACACAAGCACATGCTTTTGGAGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

116

Amino Acids

12.94

Weight (kDa)

9.2

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GED	PF02212	45 - 92	3e-11	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015729)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0335201 RchiOBHm_Chr1g0335211
rosa_multiflora	Rmu_sc0006746.1_g000019 Rmu_ssc0000259.1_g000039
rosa_rugosa	Rorug01G0121000
rosa_samantha	Rh1AG142100 Rh1AG142500 Rh1BG111000 Rh1CG134100 Rh1CG134400 Rh1CG134500 Rh1DG147100 Rh1DG147600 Rh1DG147900
rosa_wichuraiana	Rw1G011780 Rw1G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	127
AclWI	GGATC	2 cut(s)	33, 166
AflIII	ACRYGT	1 cut(s)	165
AjnI	CCWGG	2 cut(s)	70, 82
AluBI	AGCT	2 cut(s)	107, 344
AluI	AGCT	2 cut(s)	107, 344
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	33, 166
Ama87I	CYCGRG	1 cut(s)	91
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	2 cut(s)	107, 116
AspS9I	GGNCC	2 cut(s)	68, 124
AsuC2I	CCSGG	2 cut(s)	92, 93
AsuII	TTCGAA	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	2 cut(s)	94, 103
BciT130I	CCWGG	2 cut(s)	72, 84
BcnI	CCSGG	2 cut(s)	92, 93
BcoDI	GTCTC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	108, 117
BlsI	GCNGC	2 cut(s)	109, 118
Bme1390I	CCNGG	4 cut(s)	72, 84, 92, 93
Bme18I	GGWCC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	68, 124
BmrFI	CCNGG	4 cut(s)	72, 84, 92, 93
BpiI	GAAGAC	1 cut(s)	43
BplI	GAGNNNNNCTC	2 cut(s)	276, 308
Bpu14I	TTCGAA	1 cut(s)	34
BpuMI	CCSGG	2 cut(s)	92, 93
BsaJI	CCNNGG	3 cut(s)	70, 91, 216
Bse1I	ACTGG	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	257
BseBI	CCWGG	2 cut(s)	72, 84
BseDI	CCNNGG	3 cut(s)	70, 91, 216
BseMI	GCAATG	1 cut(s)	257
BseMII	CTCAG	2 cut(s)	183, 191
BseNI	ACTGG	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	94, 103
BshFI	GGCC	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	346
BsiHKCI	CYCGRG	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	91
Bsp119I	TTCGAA	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp143I	GATC	2 cut(s)	25, 158
BspACI	CCGC	1 cut(s)	127
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	2 cut(s)	184, 192
BspPI	GGATC	2 cut(s)	33, 166
BspT104I	TTCGAA	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	3 cut(s)	70, 91, 216
BssMI	GATC	2 cut(s)	25, 158
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	72, 84
Bst4CI	ACNGT	2 cut(s)	22, 233
BstBI	TTCGAA	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	192, 200
BstKTI	GATC	2 cut(s)	28, 161
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	2 cut(s)	25, 158
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 116, 341
BstNI	CCWGG	2 cut(s)	72, 84
BstNSI	RCATGY	2 cut(s)	169, 335
BstSCI	CCNGG	4 cut(s)	70, 82, 90, 91
BstV1I	GCAGC	2 cut(s)	94, 103
BstV2I	GAAGAC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	197, 229
Cfr13I	GGNCC	2 cut(s)	68, 124
Cfr9I	CCCGGG	1 cut(s)	91
CviAII	CATG	2 cut(s)	166, 332
CviJI	RGCY	5 cut(s)	69, 107, 221, 292, 344
CviKI_1	RGCY	5 cut(s)	69, 107, 221, 292, 344
DdeI	CTNAG	2 cut(s)	192, 200
DpnI	GATC	2 cut(s)	27, 160
DpnII	GATC	2 cut(s)	25, 158
Ecl136II	GAGCTC	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	346
Eco32I	GATATC	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	70, 82
EcoRV	GATATC	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	169, 335
FaiI	YATR	4 cut(s)	13, 167, 177, 333
FatI	CATG	2 cut(s)	165, 331
Fnu4HI	GCNGC	2 cut(s)	108, 117
FriOI	GRGCYC	1 cut(s)	346
Fsp4HI	GCNGC	2 cut(s)	108, 117
GluI	GCNGC	2 cut(s)	108, 117
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	1 cut(s)	92
Hin1II	CATG	2 cut(s)	169, 335
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	124, 229
Hpy188I	TCNGA	3 cut(s)	136, 150, 193
Hpy8I	GTNNAC	2 cut(s)	124, 229
HpyCH4III	ACNGT	2 cut(s)	22, 233
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 116, 341
HpyF3I	CTNAG	2 cut(s)	192, 200
Hsp92II	CATG	2 cut(s)	169, 335
Kzo9I	GATC	2 cut(s)	25, 158
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	9 cut(s)	32, 57, 69, 75, 84, 96, 105, 117, 226
Lsp1109I	GCAGC	2 cut(s)	94, 103
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	2 cut(s)	27, 160
MboI	GATC	2 cut(s)	25, 158
MboII	GAAGA	1 cut(s)	48
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	1 cut(s)	210
MnlI	CCTC	8 cut(s)	19, 68, 89, 130, 144, 181, 195, 238
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	4 cut(s)	72, 84, 92, 93
MvaI	CCWGG	2 cut(s)	72, 84
MwoI	GCNNNNNNNGC	3 cut(s)	113, 116, 341
NciI	CCSGG	2 cut(s)	92, 93
NdeII	GATC	2 cut(s)	25, 158
NlaIII	CATG	2 cut(s)	169, 335
NmuCI	GTSAC	1 cut(s)	140
NspI	RCATGY	2 cut(s)	169, 335
NspV	TTCGAA	1 cut(s)	34
PciI	ACATGT	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	109, 118
PscI	ACATGT	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	346
Psp6I	CCWGG	2 cut(s)	70, 82
PspGI	CCWGG	2 cut(s)	70, 82
PspPI	GGNCC	2 cut(s)	68, 124
PsuI	RGATCY	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	346
SatI	GCNGC	2 cut(s)	108, 117
Sau3AI	GATC	2 cut(s)	25, 158
Sau96I	GGNCC	2 cut(s)	68, 124
ScrFI	CCNGG	4 cut(s)	72, 84, 92, 93
SduI	GDGCHC	1 cut(s)	346
SetI	ASST	2 cut(s)	109, 346
SfuI	TTCGAA	1 cut(s)	34
SinI	GGWCC	1 cut(s)	124
SmaI	CCCGGG	1 cut(s)	93
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	1 cut(s)	127
SstI	GAGCTC	1 cut(s)	346
StyD4I	CCNGG	4 cut(s)	70, 82, 90, 91
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	22, 233
TaqI	TCGA	2 cut(s)	34, 161
TasI	AATT	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	5
TscAI	CASTG	2 cut(s)	204, 236
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	2 cut(s)	107, 116
Tsp45I	GTSAC	1 cut(s)	140
TspMI	CCCGGG	1 cut(s)	91
TspRI	CASTG	2 cut(s)	204, 236
VpaK11BI	GGWCC	1 cut(s)	124
XceI	RCATGY	2 cut(s)	169, 335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XmaI	CCCGGG	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.