Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006746.1

Orthogroup ID

OG0015729

Physical Location & Seq

Genomic Coordinates Reverse (-)

102935 .. 104465

Gene Structure 1531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006746.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atggaccatcttggtaggcctatagccgttgacgctgggctgcctgctgctttgaggaggcttccatttgatcgacatctgtctatgcagaatgtaaggagagtggtttcagaggctgacggttatcagcctcacttaattgccccagagcaaggttaccaccgccttattgagggatcactgaattattttagaggcccagctgaggtttctgttgatgctgtaactaatgaagcattggaaaggttccgtgatgagagtaagaaggcagctctgcgcttagtggacatggaatcctcatacttgactgtggatctctttcgaagacttccacaggaagtggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

115

Amino Acids

13.09

Weight (kDa)

5.8

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015729)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0335201 RchiOBHm_Chr1g0335211
rosa_multiflora	Rmu_sc0006746.1_g000019 Rmu_ssc0000259.1_g000039
rosa_rugosa	Rorug01G0121000
rosa_samantha	Rh1AG142100 Rh1AG142500 Rh1BG111000 Rh1CG134100 Rh1CG134400 Rh1CG134500 Rh1DG147100 Rh1DG147600 Rh1DG147900
rosa_wichuraiana	Rw1G011780 Rw1G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	2 cut(s)	184, 321
AfiI	CCNNNNNNNGG	3 cut(s)	152, 172, 205
AluBI	AGCT	2 cut(s)	203, 272
AluI	AGCT	2 cut(s)	203, 272
AlwI	GGATC	2 cut(s)	184, 321
AlwNI	CAGNNNCTG	1 cut(s)	116
AoxI	GGCC	2 cut(s)	17, 196
ApeKI	GCWGC	3 cut(s)	40, 47, 269
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	2 cut(s)	4, 197
AsuII	TTCGAA	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	331
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	3 cut(s)	27, 34, 281
BccI	CCATC	1 cut(s)	15
BceAI	ACGGC	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	3 cut(s)	41, 48, 270
BlsI	GCNGC	3 cut(s)	42, 49, 271
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 197
BmiI	GGNNCC	1 cut(s)	248
BmsI	GCATC	1 cut(s)	208
BoxI	GACNNNNGTC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	331
Bpu10I	CCTNAGC	1 cut(s)	204
Bpu14I	TTCGAA	1 cut(s)	322
BsaBI	GATNNNNATC	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 172, 205
Bse8I	GATNNNNATC	1 cut(s)	75
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	3 cut(s)	152, 172, 205
BseMII	CTCAG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	3 cut(s)	27, 34, 281
BseYI	CCCAGC	2 cut(s)	35, 199
BshFI	GGCC	2 cut(s)	19, 198
BslI	CCNNNNNNNGG	3 cut(s)	152, 172, 205
BsnI	GGCC	2 cut(s)	19, 198
Bsp119I	TTCGAA	1 cut(s)	322
Bsp143I	GATC	3 cut(s)	70, 176, 313
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	2 cut(s)	19, 198
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	248
BspPI	GGATC	2 cut(s)	184, 321
BspT104I	TTCGAA	1 cut(s)	322
BssMI	GATC	3 cut(s)	70, 176, 313
Bst4CI	ACNGT	2 cut(s)	122, 310
BstBI	TTCGAA	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	2 cut(s)	204, 280
BstEII	GGTNACC	1 cut(s)	155
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	3 cut(s)	73, 179, 316
BstMBI	GATC	3 cut(s)	70, 176, 313
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstPAI	GACNNNNGTC	1 cut(s)	79
BstPI	GGTNACC	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	3 cut(s)	27, 34, 281
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	19, 198
BtsIMutI	CAGTG	1 cut(s)	179
Cac8I	GCNNGC	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	116
CfoI	GCGC	1 cut(s)	279
Cfr13I	GGNCC	2 cut(s)	4, 197
CseI	GACGC	1 cut(s)	41
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	9 cut(s)	19, 26, 40, 61, 116, 130, 198, 203, 272
CviKI_1	RGCY	9 cut(s)	19, 26, 40, 61, 116, 130, 198, 203, 272
DdeI	CTNAG	2 cut(s)	204, 280
DpnI	GATC	3 cut(s)	72, 178, 315
DpnII	GATC	3 cut(s)	70, 176, 313
Eco147I	AGGCCT	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	4
Eco91I	GGTNACC	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoO65I	GGTNACC	1 cut(s)	155
FaeI	CATG	1 cut(s)	292
FaiI	YATR	4 cut(s)	23, 86, 290, 301
FatI	CATG	1 cut(s)	288
Fnu4HI	GCNGC	3 cut(s)	41, 48, 270
Fsp4HI	GCNGC	3 cut(s)	41, 48, 270
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	3 cut(s)	41, 48, 270
GsaI	CCCAGC	2 cut(s)	39, 203
HaeIII	GGCC	2 cut(s)	19, 198
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	279
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	1 cut(s)	293
Hpy166II	GTNNAC	2 cut(s)	31, 286
Hpy188I	TCNGA	1 cut(s)	112
Hpy8I	GTNNAC	2 cut(s)	31, 286
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	2 cut(s)	122, 310
HpyCH4V	TGCA	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	2 cut(s)	204, 280
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	70, 176, 313
LpnPI	CCDG	5 cut(s)	21, 57, 159, 213, 320
Lsp1109I	GCAGC	3 cut(s)	27, 34, 281
LweI	GCATC	1 cut(s)	208
MaeIII	GTNAC	2 cut(s)	155, 223
MalI	GATC	3 cut(s)	72, 178, 315
MboI	GATC	3 cut(s)	70, 176, 313
MboII	GAAGA	1 cut(s)	336
MflI	RGATCY	1 cut(s)	313
MluCI	AATT	2 cut(s)	138, 184
MnlI	CCTC	8 cut(s)	48, 51, 106, 141, 166, 188, 199, 307
MseI	TTAA	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeII	GATC	3 cut(s)	70, 176, 313
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	248
NspV	TTCGAA	1 cut(s)	322
PceI	AGGCCT	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	3 cut(s)	42, 49, 271
PshAI	GACNNNNGTC	1 cut(s)	79
PspEI	GGTNACC	1 cut(s)	155
PspFI	CCCAGC	2 cut(s)	35, 199
PspN4I	GGNNCC	1 cut(s)	248
PspPI	GGNCC	2 cut(s)	4, 197
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	3 cut(s)	41, 48, 270
Sau3AI	GATC	3 cut(s)	70, 176, 313
Sau96I	GGNCC	2 cut(s)	4, 197
SetI	ASST	5 cut(s)	157, 205, 210, 248, 274
SfaNI	GCATC	1 cut(s)	208
SfcI	CTRYAG	1 cut(s)	21
SfuI	TTCGAA	1 cut(s)	322
SgeI	CNNG	9 cut(s)	23, 48, 56, 158, 164, 212, 263, 301, 316
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	2 cut(s)	138, 184
SseBI	AGGCCT	1 cut(s)	19
SsiI	CCGC	1 cut(s)	163
StuI	AGGCCT	1 cut(s)	19
TaaI	ACNGT	2 cut(s)	122, 310
TaqI	TCGA	2 cut(s)	73, 322
TasI	AATT	2 cut(s)	138, 184
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	1 cut(s)	186
TseI	GCWGC	3 cut(s)	40, 47, 269
TspDTI	ATGAA	1 cut(s)	246
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.