Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0015729

Physical Location & Seq

Genomic Coordinates Reverse (-)

19034445 .. 19036249

Gene Structure 1805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG111000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTTCGATCTTATGTTGAGAAGCCTAATAGCATCATACTAGCAATATCTCCAGCACATCTGATGCTACCGAACTTGCATGCATGGGAAGTGGATGCAGCAGGTGAACGAACGTTTGGGGTGATGACAAAGCTTGATTTGATGGGCAAAGGAACTAATATTATGGATGGGCAAAGGAACTTGCATTACCCGTCAGTGGAATTGCTGCCTGCTGCTTTGAGGAGGCTTCCATTTGATCGACATCTGTCTATGCAGAATGTAAGGAGAGTGGTTTCAGAGGCTGATGTTTGTGTCTTGAAAGAACTTGTGAGGAAGTCATTAGCGGAAACTCAGGAATTGAGACGGTTTCCGACTCTGCAAGCTGAAATAGCTGCTGCAGCTAATGAAGCATTGGAAAGGTTCCGTGATGAGAGTAAGAAGGCAGTTCTGCGCTTAGTGGACATGGAATCCTCATACTTGACTGTGGATCTCTTTCGAAGACTTCCACAGGCCCAGGAGGAAAACCAGGAAACCCGGGAGGATATCCAGCTGCCAATGCTGCTGTGGGCCGCTATTCAGAGGGTCACTTTCAGAGGATATATAGGATCGAACATGTCCTCTTATATATGTGAGAATGGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

207

Amino Acids

23.6

Weight (kDa)

6.45

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	98 - 154	1.6e-06	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015729)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0335201 RchiOBHm_Chr1g0335211
rosa_multiflora	Rmu_sc0006746.1_g000019 Rmu_ssc0000259.1_g000039
rosa_rugosa	Rorug01G0121000
rosa_samantha	Rh1AG142100 Rh1AG142500 Rh1BG111000 Rh1CG134100 Rh1CG134400 Rh1CG134500 Rh1DG147100 Rh1DG147600 Rh1DG147900
rosa_wichuraiana	Rw1G011780 Rw1G011790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	92
AciI	CCGC	2 cut(s)	323, 549
AclI	AACGTT	1 cut(s)	113
AclWI	GGATC	2 cut(s)	474, 592
AfiI	CCNNNNNNNGG	1 cut(s)	196
AflIII	ACRYGT	1 cut(s)	591
AgsI	TTSAA	1 cut(s)	298
AjnI	CCWGG	2 cut(s)	492, 504
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AluBI	AGCT	5 cut(s)	133, 362, 371, 380, 529
AluI	AGCT	5 cut(s)	133, 362, 371, 380, 529
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	2 cut(s)	474, 592
AlwNI	CAGNNNCTG	1 cut(s)	281
Ama87I	CYCGRG	1 cut(s)	513
AoxI	GGCC	2 cut(s)	489, 546
ApeKI	GCWGC	8 cut(s)	98, 205, 212, 371, 374, 377, 529, 538
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	490, 546
AsuC2I	CCSGG	2 cut(s)	514, 515
AsuHPI	GGTGA	2 cut(s)	116, 133
AsuII	TTCGAA	1 cut(s)	475
AvaI	CYCGRG	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	484
BbvI	GCAGC	8 cut(s)	110, 192, 199, 358, 361, 389, 516, 525
BccI	CCATC	2 cut(s)	136, 161
BciT130I	CCWGG	2 cut(s)	494, 506
BcnI	CCSGG	2 cut(s)	514, 515
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	375
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	9 cut(s)	99, 206, 213, 372, 375, 378, 530, 539, 549
BlsI	GCNGC	9 cut(s)	100, 207, 214, 373, 376, 379, 531, 540, 550
Bme1390I	CCNGG	4 cut(s)	494, 506, 514, 515
BmeT110I	CYCGRG	1 cut(s)	513
BmgT120I	GGNCC	2 cut(s)	490, 546
BmiI	GGNNCC	1 cut(s)	401
BmrFI	CCNGG	4 cut(s)	494, 506, 514, 515
BmsI	GCATC	3 cut(s)	42, 54, 85
BoxI	GACNNNNGTC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	484
BpmI	CTGGAG	1 cut(s)	36
Bpu14I	TTCGAA	1 cut(s)	475
BpuMI	CCSGG	2 cut(s)	514, 515
BsaBI	GATNNNNATC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	492, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	494, 506
BseDI	CCNNGG	2 cut(s)	492, 513
BseGI	GGATG	2 cut(s)	100, 172
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	344
BseRI	GAGGAG	1 cut(s)	235
BseXI	GCAGC	8 cut(s)	110, 192, 199, 358, 361, 389, 516, 525
BshFI	GGCC	2 cut(s)	491, 548
BsiHKCI	CYCGRG	1 cut(s)	513
BsiSI	CCGG	1 cut(s)	514
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	334
BsmBI	CGTCTC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	491, 548
BsoBI	CYCGRG	1 cut(s)	513
Bsp119I	TTCGAA	1 cut(s)	475
Bsp143I	GATC	4 cut(s)	8, 235, 466, 584
BspACI	CCGC	2 cut(s)	323, 549
BspANI	GGCC	2 cut(s)	491, 548
BspCNI	CTCAG	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	401
BspMAI	CTGCAG	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	2 cut(s)	474, 592
BspT104I	TTCGAA	1 cut(s)	475
BssECI	CCNNGG	2 cut(s)	492, 513
BssMI	GATC	4 cut(s)	8, 235, 466, 584
Bst2UI	CCWGG	2 cut(s)	494, 506
Bst4CI	ACNGT	2 cut(s)	345, 463
BstBI	TTCGAA	1 cut(s)	475
BstC8I	GCNNGC	3 cut(s)	81, 210, 360
BstDEI	CTNAG	2 cut(s)	330, 433
BstF5I	GGATG	2 cut(s)	100, 172
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	4 cut(s)	11, 238, 469, 587
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	4 cut(s)	8, 235, 466, 584
BstMWI	GCNNNNNNNGC	5 cut(s)	368, 377, 386, 535, 538
BstNI	CCWGG	2 cut(s)	494, 506
BstNSI	RCATGY	2 cut(s)	83, 595
BstPAI	GACNNNNGTC	1 cut(s)	244
BstSCI	CCNGG	4 cut(s)	492, 504, 512, 513
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	8 cut(s)	110, 192, 199, 358, 361, 389, 516, 525
BstV2I	GAAGAC	1 cut(s)	484
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BsuRI	GGCC	2 cut(s)	491, 548
BtsCI	GGATG	2 cut(s)	100, 172
BtsIMutI	CAGTG	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	3 cut(s)	81, 210, 360
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	2 cut(s)	490, 546
Cfr9I	CCCGGG	1 cut(s)	513
CviAII	CATG	4 cut(s)	80, 84, 442, 592
DdeI	CTNAG	2 cut(s)	330, 433
DpnI	GATC	4 cut(s)	10, 237, 468, 586
DpnII	GATC	4 cut(s)	8, 235, 466, 584
Eco32I	GATATC	1 cut(s)	523
Eco88I	CYCGRG	1 cut(s)	513
EcoRII	CCWGG	2 cut(s)	492, 504
EcoRV	GATATC	1 cut(s)	523
EcoT22I	ATGCAT	1 cut(s)	85
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	4 cut(s)	83, 87, 445, 595
FatI	CATG	4 cut(s)	79, 83, 441, 591
Fnu4HI	GCNGC	9 cut(s)	99, 206, 213, 372, 375, 378, 530, 539, 549
FokI	GGATG	2 cut(s)	107, 179
Fsp4HI	GCNGC	9 cut(s)	99, 206, 213, 372, 375, 378, 530, 539, 549
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	9 cut(s)	99, 206, 213, 372, 375, 378, 530, 539, 549
GsuI	CTGGAG	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	491, 548
HapII	CCGG	1 cut(s)	514
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	4 cut(s)	83, 87, 445, 595
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	2 cut(s)	352, 446
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	2 cut(s)	116, 133
Hpy166II	GTNNAC	2 cut(s)	107, 439
Hpy188I	TCNGA	6 cut(s)	63, 277, 351, 558, 572, 623
Hpy188III	TCNNGA	2 cut(s)	295, 332
Hpy8I	GTNNAC	2 cut(s)	107, 439
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	2 cut(s)	345, 463
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	7 cut(s)	79, 83, 98, 184, 253, 358, 377
HpyF10VI	GCNNNNNNNGC	5 cut(s)	368, 377, 386, 535, 538
HpyF3I	CTNAG	2 cut(s)	330, 433
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	4 cut(s)	83, 87, 445, 595
HspAI	GCGC	1 cut(s)	430
Kzo9I	GATC	4 cut(s)	8, 235, 466, 584
Lsp1109I	GCAGC	8 cut(s)	110, 192, 199, 358, 361, 389, 516, 525
LweI	GCATC	3 cut(s)	42, 54, 85
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	562
MalI	GATC	4 cut(s)	10, 237, 468, 586
MboI	GATC	4 cut(s)	8, 235, 466, 584
MboII	GAAGA	1 cut(s)	489
MflI	RGATCY	1 cut(s)	466
MluCI	AATT	2 cut(s)	200, 335
MlyI	GAGTC	1 cut(s)	346
MmeI	TCCRAC	1 cut(s)	374
Mph1103I	ATGCAT	1 cut(s)	85
MspA1I	CMGCKG	1 cut(s)	529
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	4 cut(s)	494, 506, 514, 515
MvaI	CCWGG	2 cut(s)	494, 506
MwoI	GCNNNNNNNGC	5 cut(s)	368, 377, 386, 535, 538
NciI	CCSGG	2 cut(s)	514, 515
NdeII	GATC	4 cut(s)	8, 235, 466, 584
NlaIII	CATG	4 cut(s)	83, 87, 445, 595
NlaIV	GGNNCC	1 cut(s)	401
NmuCI	GTSAC	1 cut(s)	562
NsiI	ATGCAT	1 cut(s)	85
NspI	RCATGY	2 cut(s)	83, 595
NspV	TTCGAA	1 cut(s)	475
PaeI	GCATGC	1 cut(s)	83
PaqCI	CACCTGC	1 cut(s)	92
PciI	ACATGT	1 cut(s)	591
PfeI	GAWTC	1 cut(s)	446
PkrI	GCNGC	9 cut(s)	100, 207, 214, 373, 376, 379, 531, 540, 550
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PscI	ACATGT	1 cut(s)	591
PshAI	GACNNNNGTC	1 cut(s)	244
Psp1406I	AACGTT	1 cut(s)	113
Psp6I	CCWGG	2 cut(s)	492, 504
PspGI	CCWGG	2 cut(s)	492, 504
PspN4I	GGNNCC	1 cut(s)	401
PspPI	GGNCC	2 cut(s)	490, 546
PsrI	GAACNNNNNNTAC	2 cut(s)	170, 202
PstI	CTGCAG	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	466
PvuII	CAGCTG	1 cut(s)	529
SatI	GCNGC	9 cut(s)	99, 206, 213, 372, 375, 378, 530, 539, 549
Sau3AI	GATC	4 cut(s)	8, 235, 466, 584
Sau96I	GGNCC	2 cut(s)	490, 546
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	4 cut(s)	494, 506, 514, 515
SetI	ASST	8 cut(s)	106, 116, 135, 364, 373, 382, 401, 531
SfaNI	GCATC	3 cut(s)	42, 54, 85
SfcI	CTRYAG	1 cut(s)	375
SfuI	TTCGAA	1 cut(s)	475
SmaI	CCCGGG	1 cut(s)	515
SphI	GCATGC	1 cut(s)	83
Sse9I	AATT	2 cut(s)	200, 335
SsiI	CCGC	2 cut(s)	323, 549
SspI	AATATT	1 cut(s)	160
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	4 cut(s)	492, 504, 512, 513
TaaI	ACNGT	2 cut(s)	345, 463
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	4 cut(s)	7, 238, 475, 587
TasI	AATT	2 cut(s)	200, 335
TauI	GCSGC	1 cut(s)	551
TfiI	GAWTC	1 cut(s)	446
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	8 cut(s)	98, 205, 212, 371, 374, 377, 529, 538
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	1 cut(s)	399
TspGWI	ACGGA	1 cut(s)	392
TspMI	CCCGGG	1 cut(s)	513
TspRI	CASTG	1 cut(s)	201
XceI	RCATGY	2 cut(s)	83, 595
XcmI	CCANNNNNNNNNTGG	1 cut(s)	540
XmaI	CCCGGG	1 cut(s)	513
XspI	CTAG	1 cut(s)	41
Zsp2I	ATGCAT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.