Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0335201 RchiOBHm_Chr1g0335211 |
| rosa_multiflora | Rmu_sc0006746.1_g000019 Rmu_ssc0000259.1_g000039 |
| rosa_rugosa | Rorug01G0121000 |
| rosa_samantha | Rh1AG142100 Rh1AG142500 Rh1BG111000 Rh1CG134100 Rh1CG134400 Rh1CG134500 Rh1DG147100 Rh1DG147600 Rh1DG147900 |
| rosa_wichuraiana | Rw1G011780 Rw1G011790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 100 |
| AclWI | GGATC | 1 cut(s) | 121 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 89, 109, 142 |
| AluBI | AGCT | 1 cut(s) | 140 |
| AluI | AGCT | 1 cut(s) | 140 |
| AlwI | GGATC | 1 cut(s) | 121 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 53 |
| AoxI | GGCC | 1 cut(s) | 133 |
| AspS9I | GGNCC | 1 cut(s) | 134 |
| BbvCI | CCTCAGC | 1 cut(s) | 141 |
| BccI | CCATC | 2 cut(s) | 50, 190 |
| BfmI | CTRYAG | 1 cut(s) | 209 |
| BmgT120I | GGNCC | 1 cut(s) | 134 |
| Bpu10I | CCTNAGC | 1 cut(s) | 141 |
| BsaBI | GATNNNNATC | 1 cut(s) | 60 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 89, 109, 142 |
| Bse8I | GATNNNNATC | 1 cut(s) | 60 |
| BseJI | GATNNNNATC | 1 cut(s) | 60 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 89, 109, 142 |
| BseMII | CTCAG | 1 cut(s) | 132 |
| BseRI | GAGGAG | 1 cut(s) | 217 |
| BseYI | CCCAGC | 1 cut(s) | 136 |
| BshFI | GGCC | 1 cut(s) | 135 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 89, 109, 142 |
| BsnI | GGCC | 1 cut(s) | 135 |
| Bsp143I | GATC | 1 cut(s) | 113 |
| BspACI | CCGC | 1 cut(s) | 100 |
| BspANI | GGCC | 1 cut(s) | 135 |
| BspCNI | CTCAG | 1 cut(s) | 133 |
| BspPI | GGATC | 1 cut(s) | 121 |
| BssMI | GATC | 1 cut(s) | 113 |
| Bst4CI | ACNGT | 1 cut(s) | 213 |
| BstDEI | CTNAG | 1 cut(s) | 141 |
| BstEII | GGTNACC | 1 cut(s) | 92 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 107 |
| BstKTI | GATC | 1 cut(s) | 116 |
| BstMBI | GATC | 1 cut(s) | 113 |
| BstPI | GGTNACC | 1 cut(s) | 92 |
| BstSFI | CTRYAG | 1 cut(s) | 209 |
| BsuRI | GGCC | 1 cut(s) | 135 |
| BtsIMutI | CAGTG | 2 cut(s) | 116, 218 |
| CaiI | CAGNNNCTG | 1 cut(s) | 53 |
| Cfr13I | GGNCC | 1 cut(s) | 134 |
| CviAII | CATG | 1 cut(s) | 155 |
| CviJI | RGCY | 5 cut(s) | 53, 67, 135, 140, 208 |
| CviKI_1 | RGCY | 5 cut(s) | 53, 67, 135, 140, 208 |
| DdeI | CTNAG | 1 cut(s) | 141 |
| DpnI | GATC | 1 cut(s) | 115 |
| DpnII | GATC | 1 cut(s) | 113 |
| Eco91I | GGTNACC | 1 cut(s) | 92 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 107 |
| EcoO65I | GGTNACC | 1 cut(s) | 92 |
| FaeI | CATG | 1 cut(s) | 158 |
| FaiI | YATR | 3 cut(s) | 23, 32, 156 |
| FatI | CATG | 1 cut(s) | 154 |
| GsaI | CCCAGC | 1 cut(s) | 140 |
| HaeIII | GGCC | 1 cut(s) | 135 |
| Hin1II | CATG | 1 cut(s) | 158 |
| Hpy188I | TCNGA | 2 cut(s) | 49, 177 |
| HpyCH4III | ACNGT | 1 cut(s) | 213 |
| HpyF3I | CTNAG | 1 cut(s) | 141 |
| Hsp92II | CATG | 1 cut(s) | 158 |
| Kzo9I | GATC | 1 cut(s) | 113 |
| LpnPI | CCDG | 3 cut(s) | 96, 144, 150 |
| MaeIII | GTNAC | 1 cut(s) | 92 |
| MalI | GATC | 1 cut(s) | 115 |
| MboI | GATC | 1 cut(s) | 113 |
| MluCI | AATT | 2 cut(s) | 75, 121 |
| MnlI | CCTC | 7 cut(s) | 43, 78, 103, 125, 136, 195, 198 |
| MseI | TTAA | 1 cut(s) | 74 |
| MspA1I | CMGCKG | 1 cut(s) | 140 |
| NdeII | GATC | 1 cut(s) | 113 |
| NlaIII | CATG | 1 cut(s) | 158 |
| PspEI | GGTNACC | 1 cut(s) | 92 |
| PspFI | CCCAGC | 1 cut(s) | 136 |
| PspPI | GGNCC | 1 cut(s) | 134 |
| PstNI | CAGNNNCTG | 1 cut(s) | 53 |
| PvuII | CAGCTG | 1 cut(s) | 140 |
| SaqAI | TTAA | 1 cut(s) | 74 |
| Sau3AI | GATC | 1 cut(s) | 113 |
| Sau96I | GGNCC | 1 cut(s) | 134 |
| SetI | ASST | 3 cut(s) | 94, 142, 147 |
| SfcI | CTRYAG | 1 cut(s) | 209 |
| SgeI | CNNG | 7 cut(s) | 95, 101, 149, 167, 171, 194, 205 |
| Sse9I | AATT | 2 cut(s) | 75, 121 |
| SsiI | CCGC | 1 cut(s) | 100 |
| SspI | AATATT | 1 cut(s) | 19 |
| TaaI | ACNGT | 1 cut(s) | 213 |
| TasI | AATT | 2 cut(s) | 75, 121 |
| Tru1I | TTAA | 1 cut(s) | 74 |
| Tru9I | TTAA | 1 cut(s) | 74 |
| TscAI | CASTG | 2 cut(s) | 123, 218 |
| TspDTI | ATGAA | 1 cut(s) | 143 |
| TspRI | CASTG | 2 cut(s) | 123, 218 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 107 |