Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014846

Physical Location & Seq

Genomic Coordinates Forward (+)

29277222 .. 29277758

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48995

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGTTGTGTTATCATGGTGTCACTCTCAGAGACTATTGGAATTATTCTCGGTATCATCTTATGGTCGAGGTATTGGGGAAGAGCTCCTGCACGTGGTTTGGCGGTTTTGGGTCACGGTGTTGAAGGGAGTCATTTTCTTCTTGAGATTGGCTATGAGGAGGTATGGAGACTTCTGGGTTGGTTTATCTGATGAGCTATTGTTACGACGTTACTTCCGAGGACTATATGTGATATTATCGGTGGTTTCTGGTGGTCAATATGGCGGCGATTTATCCTTGTACGTGGTCTGGATACTTTGGGACACGGTATGGAGGAGGATGACATGGTTGTTCTTAGTATTGGCGGCGAGATTTTATCGTGACTCTCGGGATTGGTATTGTTATGTAGTCCGAGGAAATGGGCGATTAGTTTGGTTAGGGGTTGGGCCCATTTGGCTCATGGATGTCATGGTTGTTGACGGACCCGTAACTGAGGTTGTTCTTAGGGAGGAGAGTGGGGAACTTATGTCCACCACCGGTCAGTCCCGTTTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

20.91

Weight (kDa)

9.03

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014846)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0116941 RchiOBHm_Chr5g0032611 RchiOBHm_Chr5g0046641 RchiOBHm_Chr6g0282921
rosa_multiflora	Rmu_sc0007286.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101500
rosa_rugosa	Rorug01G0349400 Rorug02G0010600 Rorug02G0619200 Rorug04G0094800 Rorug05G0122900 Rorug07G0205600
rosa_samantha	Rh3CG287400 Rh3DG279100 Rh3DG283200 Rh5AG051900 Rh7BG387700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	103, 264, 344
AcvI	CACGTG	1 cut(s)	94
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgeI	ACCGGT	1 cut(s)	515
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	2 cut(s)	85, 196
AluI	AGCT	2 cut(s)	85, 196
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	2 cut(s)	25, 162
Ama87I	CYCGRG	1 cut(s)	366
AoxI	GGCC	1 cut(s)	425
ApaI	GGGCCC	1 cut(s)	429
AsiGI	ACCGGT	1 cut(s)	515
AspS9I	GGNCC	3 cut(s)	425, 426, 461
AvaI	CYCGRG	1 cut(s)	366
AvaII	GGWCC	1 cut(s)	461
BaeGI	GKGCMC	1 cut(s)	429
BanII	GRGCYC	2 cut(s)	87, 429
BarI	GAAGNNNNNNTAC	2 cut(s)	155, 187
BbrPI	CACGTG	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	87
BciVI	GTATCC	1 cut(s)	285
BcoDI	GTCTC	2 cut(s)	25, 162
BfuI	GTATCC	1 cut(s)	285
BglI	GCCNNNNNGGC	1 cut(s)	433
BisI	GCNGC	2 cut(s)	265, 345
BlsI	GCNGC	2 cut(s)	266, 346
Bme18I	GGWCC	1 cut(s)	461
BmeT110I	CYCGRG	1 cut(s)	366
BmgT120I	GGNCC	3 cut(s)	425, 426, 461
BmiI	GGNNCC	2 cut(s)	427, 463
BpuEI	CTTGAG	1 cut(s)	163
BsaAI	YACGTR	2 cut(s)	94, 283
BsaJI	CCNNGG	2 cut(s)	217, 391
BsaWI	WCCGGW	1 cut(s)	515
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse118I	RCCGGY	1 cut(s)	515
BseDI	CCNNGG	2 cut(s)	217, 391
BseGI	GGATG	2 cut(s)	324, 448
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	2 cut(s)	41, 462
BseRI	GAGGAG	3 cut(s)	172, 328, 503
BseSI	GKGCMC	1 cut(s)	429
BsgI	GTGCAG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	427
BshTI	ACCGGT	1 cut(s)	515
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	516
BslFI	GGGAC	2 cut(s)	314, 508
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	2 cut(s)	25, 162
BsmFI	GGGAC	2 cut(s)	314, 508
BsnI	GGCC	1 cut(s)	427
BsoBI	CYCGRG	1 cut(s)	366
Bsp120I	GGGCCC	1 cut(s)	425
Bsp1286I	GDGCHC	2 cut(s)	87, 429
BspACI	CCGC	3 cut(s)	103, 264, 344
BspANI	GGCC	1 cut(s)	427
BspCNI	CTCAG	2 cut(s)	40, 463
BspLI	GGNNCC	2 cut(s)	427, 463
BspQI	GCTCTTC	1 cut(s)	75
BsrFI	RCCGGY	1 cut(s)	515
BssAI	RCCGGY	1 cut(s)	515
BssECI	CCNNGG	2 cut(s)	217, 391
Bst4CI	ACNGT	2 cut(s)	118, 307
Bst6I	CTCTTC	1 cut(s)	75
BstBAI	YACGTR	2 cut(s)	94, 283
BstDEI	CTNAG	4 cut(s)	27, 334, 471, 482
BstF5I	GGATG	2 cut(s)	324, 448
BstMAI	GTCTC	2 cut(s)	25, 162
BstMWI	GCNNNNNNNGC	1 cut(s)	433
BstSLI	GKGCMC	1 cut(s)	429
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	324, 448
Cfr10I	RCCGGY	1 cut(s)	515
Cfr13I	GGNCC	3 cut(s)	425, 426, 461
Csp6I	GTAC	1 cut(s)	280
CspAI	ACCGGT	1 cut(s)	515
CviAII	CATG	4 cut(s)	15, 324, 439, 448
CviJI	RGCY	5 cut(s)	85, 152, 196, 427, 436
CviKI_1	RGCY	5 cut(s)	85, 152, 196, 427, 436
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	4 cut(s)	27, 334, 471, 482
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	85
Eco24I	GRGCYC	2 cut(s)	87, 429
Eco47I	GGWCC	1 cut(s)	461
Eco53kI	GAGCTC	1 cut(s)	85
Eco72I	CACGTG	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	366
EcoICRI	GAGCTC	1 cut(s)	85
EcoT38I	GRGCYC	2 cut(s)	87, 429
FaeI	CATG	4 cut(s)	18, 327, 442, 451
FaqI	GGGAC	2 cut(s)	314, 508
FatI	CATG	4 cut(s)	14, 323, 438, 447
Fnu4HI	GCNGC	2 cut(s)	265, 345
FokI	GGATG	2 cut(s)	331, 455
FriOI	GRGCYC	2 cut(s)	87, 429
Fsp4HI	GCNGC	2 cut(s)	265, 345
GluI	GCNGC	2 cut(s)	265, 345
HaeIII	GGCC	1 cut(s)	427
HapII	CCGG	1 cut(s)	516
Hin1II	CATG	4 cut(s)	18, 327, 442, 451
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	2 cut(s)	129, 362
HpaII	CCGG	1 cut(s)	516
Hpy166II	GTNNAC	2 cut(s)	457, 510
Hpy188I	TCNGA	4 cut(s)	30, 190, 218, 392
Hpy188III	TCNNGA	4 cut(s)	142, 289, 359, 368
Hpy8I	GTNNAC	2 cut(s)	457, 510
Hpy99I	CGWCG	1 cut(s)	210
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	2 cut(s)	118, 307
HpyCH4IV	ACGT	3 cut(s)	93, 208, 282
HpyCH4V	TGCA	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	1 cut(s)	433
HpyF3I	CTNAG	4 cut(s)	27, 334, 471, 482
HpySE526I	ACGT	3 cut(s)	93, 208, 282
Hsp92II	CATG	4 cut(s)	18, 327, 442, 451
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	90
LpnPI	CCDG	5 cut(s)	101, 160, 234, 274, 529
MaeII	ACGT	3 cut(s)	93, 208, 282
MaeIII	GTNAC	6 cut(s)	20, 112, 201, 209, 359, 466
MboII	GAAGA	2 cut(s)	92, 130
MhlI	GDGCHC	2 cut(s)	87, 429
MluCI	AATT	1 cut(s)	41
MlyI	GAGTC	2 cut(s)	138, 356
MnlI	CCTC	9 cut(s)	62, 150, 153, 212, 306, 309, 386, 466, 481
MspI	CCGG	1 cut(s)	516
MwoI	GCNNNNNNNGC	1 cut(s)	433
NlaIII	CATG	4 cut(s)	18, 327, 442, 451
NlaIV	GGNNCC	2 cut(s)	427, 463
NmuCI	GTSAC	3 cut(s)	20, 112, 359
PciSI	GCTCTTC	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	214
PinAI	ACCGGT	1 cut(s)	515
PkrI	GCNGC	2 cut(s)	266, 346
PleI	GAGTC	2 cut(s)	137, 356
PmaCI	CACGTG	1 cut(s)	94
PmlI	CACGTG	1 cut(s)	94
PpsI	GAGTC	2 cut(s)	137, 356
Ppu21I	YACGTR	2 cut(s)	94, 283
Psp124BI	GAGCTC	1 cut(s)	87
PspCI	CACGTG	1 cut(s)	94
PspN4I	GGNNCC	2 cut(s)	427, 463
PspOMI	GGGCCC	1 cut(s)	425
PspPI	GGNCC	3 cut(s)	425, 426, 461
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SacI	GAGCTC	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	75
SatI	GCNGC	2 cut(s)	265, 345
Sau96I	GGNCC	3 cut(s)	425, 426, 461
SchI	GAGTC	2 cut(s)	138, 356
SduI	GDGCHC	2 cut(s)	87, 429
SetI	ASST	8 cut(s)	73, 87, 96, 164, 198, 211, 285, 477
SinI	GGWCC	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	1 cut(s)	41
SsiI	CCGC	3 cut(s)	103, 264, 344
SstI	GAGCTC	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	118, 307
TaiI	ACGT	3 cut(s)	96, 211, 285
TaqI	TCGA	1 cut(s)	67
TasI	AATT	1 cut(s)	41
TauI	GCSGC	2 cut(s)	267, 347
TseFI	GTSAC	3 cut(s)	20, 112, 359
Tsp45I	GTSAC	3 cut(s)	20, 112, 359
TspGWI	ACGGA	1 cut(s)	474
VpaK11BI	GGWCC	1 cut(s)	461
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.