RchiOBHm_Chr5g0032611

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
26363273 .. 26363694
422 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31179

Sequence Viewer

Length: 264 bp
ATGGTTGTTATTGGAGGTTTGATGTTGGCCGATCGGAGAAGTGAAGCAAGTTGTGGCGGGTATTGGGGTCTTGGTATGGTAGTTGCGTCGGTTCATTCCCAAGGACTCAAGTTACTATTAGTACTTTTTTATGGTCAAAGTAATGGGGAAAAACTCTTGCACATGGTCTGGCGGTTTTGGGTCATGGTATTGAAAGGAGTAATTTTCGTCTTGAGGTTGGCTATGAGGAGGTACTTTTACTCCTGGAACAGTGTGGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.94

Weight (kDa)

9.65

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 57, 172
AcoI YGGCCR 1 cut(s) 27
AfaI GTAC 2 cut(s) 123, 233
AgsI TTSAA 1 cut(s) 193
AjnI CCWGG 1 cut(s) 242
AoxI GGCC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 244
BmcAI AGTACT 1 cut(s) 123
Bme1390I CCNGG 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 244
BpuEI CTTGAG 2 cut(s) 92, 232
BsaJI CCNNGG 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 262
BseRI GAGGAG 1 cut(s) 241
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 34
BsnI GGCC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 31
BspACI CCGC 2 cut(s) 57, 172
BspANI GGCC 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 251
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 1 cut(s) 34
BstMBI GATC 1 cut(s) 31
BstMCI CGRYCG 1 cut(s) 34
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 242
BsuRI GGCC 1 cut(s) 29
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 256
CseI GACGC 1 cut(s) 75
Csp6I GTAC 2 cut(s) 122, 232
CviAII CATG 2 cut(s) 163, 184
CviJI RGCY 2 cut(s) 29, 221
CviKI_1 RGCY 2 cut(s) 29, 221
CviQI GTAC 2 cut(s) 122, 232
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 2 cut(s) 166, 187
FaiI YATR 5 cut(s) 77, 132, 164, 185, 224
FatI CATG 2 cut(s) 162, 183
FauI CCCGC 1 cut(s) 50
HaeIII GGCC 1 cut(s) 29
HgaI GACGC 1 cut(s) 75
Hin1II CATG 2 cut(s) 166, 187
HinfI GANTC 1 cut(s) 105
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 211
Hpy99I CGWCG 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 1 cut(s) 160
Hsp92II CATG 2 cut(s) 166, 187
Kzo9I GATC 1 cut(s) 31
LpnPI CCDG 3 cut(s) 154, 229, 256
MaeIII GTNAC 1 cut(s) 111
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MluCI AATT 1 cut(s) 201
MlyI GAGTC 1 cut(s) 99
MnlI CCTC 4 cut(s) 8, 207, 219, 222
MspR9I CCNGG 1 cut(s) 244
MvaI CCWGG 1 cut(s) 244
NdeII GATC 1 cut(s) 31
NlaIII CATG 2 cut(s) 166, 187
PfoI TCCNGGA 1 cut(s) 242
Ple19I CGATCG 1 cut(s) 34
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PvuI CGATCG 1 cut(s) 34
RsaI GTAC 2 cut(s) 123, 233
RsaNI GTAC 2 cut(s) 122, 232
Sau3AI GATC 1 cut(s) 31
ScaI AGTACT 1 cut(s) 123
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 244
SetI ASST 3 cut(s) 19, 218, 233
SmlI CTYRAG 2 cut(s) 107, 211
SmoI CTYRAG 2 cut(s) 107, 211
Sse9I AATT 1 cut(s) 201
SsiI CCGC 2 cut(s) 57, 172
StyD4I CCNGG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 251
TasI AATT 1 cut(s) 201
TatI WGTACW 1 cut(s) 121
TscAI CASTG 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 1 cut(s) 256
ZrmI AGTACT 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.