RchiOBHm_Chr5g0046641

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0014846
Physical Location & Seq
Forward (+)
42785901 .. 42786863
963 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32463

Sequence Viewer

Length: 918 bp
ATGCCTTGCCGGTGTGTGGCAGGTGCAGCCGGACGGGCATCTGGATTGTCTGTTGTCTGGCTCTCTTGGAGTCATAGGTGCTATGGGCAGGTACCCTGTACCGGCATGCTTCGTCTCTCTCCTCTGAAGGCAGTGTGGGCTGTTCTGATGGCTGGATCGAGCGGGGCTTCTCTGAACTGGGGACCCAGGTTTGCAGTTTGGAGATGGGGTTGCGATTGGGTTGGGCTTGACATTCGATGTAGCGGTGTTACATGGTGGAACCTCCGGGATCAGCAAGAAGATGGGGCAATACATCAGGGCAGATGGTGGTTGACGGTTTCGAGCCTATGGAGGCTATGCAGCGGTGTTTTTGGAAGATGGCGATGGATGGAGACTTTGTGGGTTCGAGATCTGAAACTGGGTGATGGGGTTGAATTGATGTTTGGGGTCTTTGGATGGGTGATCATCGGTGGCTGGGTTGGCATCAAGTTGCTATGTCGAAGAGGGCGGTGGTCGTATTTCGTTAACCCCAAATGCTGTTGCAGCGGGATGACGGTGGCCATCGGGCAGATGGAGGCGGCGGTCTTGGAGAGGATAGTTGTTCGTGTTCTTTGGCTTAGTCTAATAAGTCCCTACTCTATCGAGCTAGGGTTTTGGAGTCTTAGTATGGTGGTTGTATCGTGTCATTCCCAGGAATTCAATTTACCTTTTTGTGGTCAAAGTAATGAGGAGAAGCTCTTGCACGTGGTCTGGCGGTTTTGGGTCATGGTGTTGAAGGGAGTATTTTTCCTCTTGAGGTCGGCTGTGAGGATGTATTTTGTCTCCTGGGTTAGTATGGATGAAGTGCTGTTGATATGGCGTTATGTCCGAGGCCTACATGTTTTATTTTCGGTGTTTTCTTGTTGTCAATGTGGTAGTCAAGGTTCTAAAAAACGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

34.86

Weight (kDa)

9.39

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 11
Acc36I ACCTGC 2 cut(s) 11, 79
Acc65I GGTACC 1 cut(s) 91
AccB1I GGYRCC 1 cut(s) 91
AccBSI CCGCTC 1 cut(s) 162
AciI CCGC 8 cut(s) 162, 243, 342, 487, 525, 557, 560, 733
AclWI GGATC 2 cut(s) 163, 276
AcoI YGGCCR 1 cut(s) 537
AcsI RAATTY 1 cut(s) 674
AcuI CTGAAG 1 cut(s) 146
AcvI CACGTG 1 cut(s) 724
AfaI GTAC 2 cut(s) 93, 100
AfiI CCNNNNNNNGG 3 cut(s) 16, 101, 692
AflIII ACRYGT 1 cut(s) 856
AgsI TTSAA 3 cut(s) 413, 679, 754
AjnI CCWGG 3 cut(s) 185, 669, 803
AjuI GAANNNNNNNTTGG 2 cut(s) 405, 437
AluBI AGCT 2 cut(s) 625, 715
AluI AGCT 2 cut(s) 625, 715
Alw26I GTCTC 3 cut(s) 119, 365, 805
AlwI GGATC 2 cut(s) 163, 276
AoxI GGCC 2 cut(s) 537, 850
ApeKI GCWGC 3 cut(s) 26, 339, 522
ApoI RAATTY 1 cut(s) 674
Asp718I GGTACC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 266
AsuHPI GGTGA 2 cut(s) 413, 451
AvaII GGWCC 1 cut(s) 182
BalI TGGCCA 1 cut(s) 539
BanI GGYRCC 1 cut(s) 91
BbrPI CACGTG 1 cut(s) 724
BbvI GCAGC 3 cut(s) 38, 351, 534
BciT130I CCWGG 3 cut(s) 187, 671, 805
BclI TGATCA 1 cut(s) 441
BcnI CCSGG 1 cut(s) 266
BcoDI GTCTC 3 cut(s) 119, 365, 805
BfaI CTAG 1 cut(s) 626
BfuAI ACCTGC 2 cut(s) 11, 79
BglI GCCNNNNNGGC 1 cut(s) 35
BglII AGATCT 1 cut(s) 388
BisI GCNGC 4 cut(s) 27, 340, 523, 558
BlsI GCNGC 4 cut(s) 28, 341, 524, 559
Bme1390I CCNGG 4 cut(s) 187, 266, 671, 805
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 4 cut(s) 93, 183, 184, 260
BmrFI CCNGG 4 cut(s) 187, 266, 671, 805
BmrI ACTGGG 2 cut(s) 187, 407
BmsI GCATC 2 cut(s) 47, 471
BmuI ACTGGG 2 cut(s) 187, 407
BpuEI CTTGAG 1 cut(s) 793
BpuMI CCSGG 1 cut(s) 266
BsaAI YACGTR 1 cut(s) 724
BsaJI CCNNGG 4 cut(s) 185, 669, 804, 847
BsaXI ACNNNNNCTCC 6 cut(s) 193, 223, 362, 392, 628, 658
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 101, 692
Bse118I RCCGGY 2 cut(s) 9, 101
Bse1I ACTGG 2 cut(s) 182, 402
BseBI CCWGG 3 cut(s) 187, 671, 805
BseDI CCNNGG 4 cut(s) 185, 669, 804, 847
BseGI GGATG 5 cut(s) 372, 440, 534, 795, 823
BseLI CCNNNNNNNGG 3 cut(s) 16, 101, 692
BseNI ACTGG 2 cut(s) 182, 402
BseRI GAGGAG 2 cut(s) 111, 722
BseXI GCAGC 3 cut(s) 38, 351, 534
BseYI CCCAGC 1 cut(s) 453
BsgI GTGCAG 1 cut(s) 45
BshFI GGCC 2 cut(s) 539, 852
BshNI GGYRCC 1 cut(s) 91
BsiSI CCGG 4 cut(s) 10, 30, 102, 265
BslFI GGGAC 2 cut(s) 195, 594
BslI CCNNNNNNNGG 3 cut(s) 16, 101, 692
BsmAI GTCTC 3 cut(s) 119, 365, 805
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 2 cut(s) 195, 594
BsnI GGCC 2 cut(s) 539, 852
Bsp143I GATC 4 cut(s) 155, 268, 388, 441
BspACI CCGC 8 cut(s) 162, 243, 342, 487, 525, 557, 560, 733
BspANI GGCC 2 cut(s) 539, 852
BspLI GGNNCC 4 cut(s) 93, 183, 184, 260
BspMI ACCTGC 2 cut(s) 11, 79
BspPI GGATC 2 cut(s) 163, 276
BspT107I GGYRCC 1 cut(s) 91
BsrBI CCGCTC 1 cut(s) 162
BsrFI RCCGGY 2 cut(s) 9, 101
BsrI ACTGG 2 cut(s) 182, 402
BssAI RCCGGY 2 cut(s) 9, 101
BssECI CCNNGG 4 cut(s) 185, 669, 804, 847
BssMI GATC 4 cut(s) 155, 268, 388, 441
Bst2UI CCWGG 3 cut(s) 187, 671, 805
Bst4CI ACNGT 2 cut(s) 316, 535
Bst6I CTCTTC 1 cut(s) 475
BstBAI YACGTR 1 cut(s) 724
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 2 cut(s) 596, 641
BstF5I GGATG 5 cut(s) 372, 440, 534, 795, 823
BstKTI GATC 4 cut(s) 158, 271, 391, 444
BstMAI GTCTC 3 cut(s) 119, 365, 805
BstMBI GATC 4 cut(s) 155, 268, 388, 441
BstMWI GCNNNNNNNGC 5 cut(s) 26, 35, 137, 459, 522
BstNI CCWGG 3 cut(s) 187, 671, 805
BstNSI RCATGY 2 cut(s) 109, 860
BstSCI CCNGG 4 cut(s) 185, 264, 669, 803
BstV1I GCAGC 3 cut(s) 38, 351, 534
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BsuRI GGCC 2 cut(s) 539, 852
BtgZI GCGATG 1 cut(s) 376
BtsCI GGATG 5 cut(s) 372, 440, 534, 795, 823
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 2 cut(s) 11, 79
Cac8I GCNNGC 1 cut(s) 107
Cfr10I RCCGGY 2 cut(s) 9, 101
Cfr13I GGNCC 1 cut(s) 182
Csp6I GTAC 2 cut(s) 92, 99
CviAII CATG 4 cut(s) 106, 252, 745, 857
CviQI GTAC 2 cut(s) 92, 99
DdeI CTNAG 2 cut(s) 596, 641
DpnI GATC 4 cut(s) 157, 270, 390, 443
DpnII GATC 4 cut(s) 155, 268, 388, 441
EaeI YGGCCR 1 cut(s) 537
Eam1104I CTCTTC 1 cut(s) 475
EarI CTCTTC 1 cut(s) 475
Eco147I AGGCCT 1 cut(s) 852
Eco47I GGWCC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 146
Eco72I CACGTG 1 cut(s) 724
EcoO109I RGGNCCY 1 cut(s) 182
EcoRI GAATTC 1 cut(s) 674
EcoRII CCWGG 3 cut(s) 185, 669, 803
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 4 cut(s) 109, 255, 748, 860
FaqI GGGAC 2 cut(s) 195, 594
FatI CATG 4 cut(s) 105, 251, 744, 856
FauI CCCGC 2 cut(s) 155, 518
FbaI TGATCA 1 cut(s) 441
Fnu4HI GCNGC 4 cut(s) 27, 340, 523, 558
FokI GGATG 5 cut(s) 379, 447, 541, 802, 830
Fsp4HI GCNGC 4 cut(s) 27, 340, 523, 558
FspBI CTAG 1 cut(s) 626
GluI GCNGC 4 cut(s) 27, 340, 523, 558
GsaI CCCAGC 1 cut(s) 457
HaeIII GGCC 2 cut(s) 539, 852
HapII CCGG 4 cut(s) 10, 30, 102, 265
Hin1II CATG 4 cut(s) 109, 255, 748, 860
HincII GTYRAC 2 cut(s) 312, 505
HindII GTYRAC 2 cut(s) 312, 505
HinfI GANTC 2 cut(s) 70, 637
HpaI GTTAAC 1 cut(s) 505
HpaII CCGG 4 cut(s) 10, 30, 102, 265
HphI GGTGA 2 cut(s) 413, 451
Hpy166II GTNNAC 2 cut(s) 312, 505
Hpy188I TCNGA 5 cut(s) 126, 147, 174, 393, 848
Hpy188III TCNNGA 3 cut(s) 42, 386, 772
Hpy8I GTNNAC 2 cut(s) 312, 505
HpyAV CCTTC 2 cut(s) 121, 748
HpyCH4III ACNGT 2 cut(s) 316, 535
HpyCH4IV ACGT 1 cut(s) 723
HpyCH4V TGCA 5 cut(s) 26, 194, 339, 522, 721
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 35, 137, 459, 522
HpyF3I CTNAG 2 cut(s) 596, 641
HpySE526I ACGT 1 cut(s) 723
Hsp92II CATG 4 cut(s) 109, 255, 748, 860
KflI GGGWCCC 1 cut(s) 182
KpnI GGTACC 1 cut(s) 95
Ksp22I TGATCA 1 cut(s) 441
KspAI GTTAAC 1 cut(s) 505
Kzo9I GATC 4 cut(s) 155, 268, 388, 441
Lsp1109I GCAGC 3 cut(s) 38, 351, 534
LweI GCATC 2 cut(s) 47, 471
MaeI CTAG 1 cut(s) 626
MaeII ACGT 1 cut(s) 723
MaeIII GTNAC 1 cut(s) 247
MalI GATC 4 cut(s) 157, 270, 390, 443
MbiI CCGCTC 1 cut(s) 162
MboI GATC 4 cut(s) 155, 268, 388, 441
MboII GAAGA 3 cut(s) 290, 366, 492
MflI RGATCY 1 cut(s) 388
MlsI TGGCCA 1 cut(s) 539
MluCI AATT 3 cut(s) 413, 674, 679
MluNI TGGCCA 1 cut(s) 539
MlyI GAGTC 2 cut(s) 79, 646
Mox20I TGGCCA 1 cut(s) 539
MscI TGGCCA 1 cut(s) 539
MseI TTAA 1 cut(s) 504
Msp20I TGGCCA 1 cut(s) 539
MspA1I CMGCKG 2 cut(s) 342, 525
MspI CCGG 4 cut(s) 10, 30, 102, 265
MspR9I CCNGG 4 cut(s) 187, 266, 671, 805
MvaI CCWGG 3 cut(s) 187, 671, 805
MwoI GCNNNNNNNGC 5 cut(s) 26, 35, 137, 459, 522
NciI CCSGG 1 cut(s) 266
NdeII GATC 4 cut(s) 155, 268, 388, 441
NlaIII CATG 4 cut(s) 109, 255, 748, 860
NlaIV GGNNCC 4 cut(s) 93, 183, 184, 260
NspI RCATGY 2 cut(s) 109, 860
PaeI GCATGC 1 cut(s) 109
PaqCI CACCTGC 1 cut(s) 11
PceI AGGCCT 1 cut(s) 852
PciI ACATGT 1 cut(s) 856
PfoI TCCNGGA 1 cut(s) 264
PkrI GCNGC 4 cut(s) 28, 341, 524, 559
PleI GAGTC 2 cut(s) 78, 645
PmaCI CACGTG 1 cut(s) 724
PmlI CACGTG 1 cut(s) 724
PpsI GAGTC 2 cut(s) 78, 645
Ppu21I YACGTR 1 cut(s) 724
PpuMI RGGWCCY 1 cut(s) 182
PscI ACATGT 1 cut(s) 856
Psp5II RGGWCCY 1 cut(s) 182
Psp6I CCWGG 3 cut(s) 185, 669, 803
PspCI CACGTG 1 cut(s) 724
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 3 cut(s) 185, 669, 803
PspN4I GGNNCC 4 cut(s) 93, 183, 184, 260
PspPI GGNCC 1 cut(s) 182
PspPPI RGGWCCY 1 cut(s) 182
PsrI GAACNNNNNNTAC 2 cut(s) 886, 918
PsuI RGATCY 1 cut(s) 388
RsaI GTAC 2 cut(s) 93, 100
RsaNI GTAC 2 cut(s) 92, 99
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 4 cut(s) 27, 340, 523, 558
Sau3AI GATC 4 cut(s) 155, 268, 388, 441
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 2 cut(s) 79, 646
ScrFI CCNGG 4 cut(s) 187, 266, 671, 805
SfaNI GCATC 2 cut(s) 47, 471
SinI GGWCC 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 772
SmoI CTYRAG 1 cut(s) 772
SphI GCATGC 1 cut(s) 109
Sse9I AATT 3 cut(s) 413, 674, 679
SseBI AGGCCT 1 cut(s) 852
SsiI CCGC 8 cut(s) 162, 243, 342, 487, 525, 557, 560, 733
SspMI CTAG 1 cut(s) 626
StuI AGGCCT 1 cut(s) 852
StyD4I CCNGG 4 cut(s) 185, 264, 669, 803
TaaI ACNGT 2 cut(s) 316, 535
TaiI ACGT 1 cut(s) 726
TaqI TCGA 6 cut(s) 158, 235, 320, 385, 478, 621
TasI AATT 3 cut(s) 413, 674, 679
TauI GCSGC 1 cut(s) 560
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 1 cut(s) 138
TseI GCWGC 3 cut(s) 26, 339, 522
TspDTI ATGAA 1 cut(s) 834
TspRI CASTG 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 182
XapI RAATTY 1 cut(s) 674
XceI RCATGY 2 cut(s) 109, 860
XcmI CCANNNNNNNNNTGG 1 cut(s) 547
XspI CTAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.