Rroxscaffold_2G00101500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014846
Physical Location & Seq
Forward (+)
23438084 .. 23438874
791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00101500.1

Sequence Viewer

Length: 486 bp
ATGGAACAGCAACCATCTGATCCCGGTAATGGTTTGTCCTCAATATGGAGCCTGTTGGAAGATTTAATACTTGTTCTTGCTGATCATGATCCAAATATAAGTATCTTGGCTGCCACTGCGGAGTTTGAACCAACCTGTAGCGAATTTCAGGGATTTGTAGCACAACTACACCATCAGGGGAAAAACAAGTACGACATGCAAAATCATTTTGCAAGGGAATGGTGGTCCAATCCTGGGTCTCGGCATGGGTGTATGGGATTGGTGATTAAGGAAAGTAGGATCTTCAATTTCATTGCGGTGGTTTTTGGGCGGCCGGAGTCGGAAGCTTTGATGTGGAAGGGAAAAGTTGATCAAAGTATTGGGGAAGAGCTCCTACATATGGTCTGGCTGTTTTGGGTCGCGATGTTGAATGGGGTAATTTTCTTCTTAAGGTTGGCTGTAAGGAGTATTGTGACTCATGGGTCAAATGGACTGATGTGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.21

Weight (kDa)

5.69

Isoelectric Point (pI)

36.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 460
AccII CGCG 1 cut(s) 401
AciI CCGC 3 cut(s) 119, 296, 310
AclWI GGATC 3 cut(s) 14, 83, 287
AcoI YGGCCR 1 cut(s) 311
AcsI RAATTY 1 cut(s) 143
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 4 cut(s) 29, 45, 234, 379
AflII CTTAAG 1 cut(s) 427
AgsI TTSAA 3 cut(s) 128, 286, 409
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 2 cut(s) 326, 370
AluI AGCT 2 cut(s) 326, 370
Alw21I GWGCWC 1 cut(s) 372
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 3 cut(s) 14, 83, 287
AoxI GGCC 1 cut(s) 311
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 225
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 1 cut(s) 225
BanII GRGCYC 1 cut(s) 372
BarI GAAGNNNNNNTAC 4 cut(s) 51, 83, 357, 389
Bbv12I GWGCWC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 97
BccI CCATC 2 cut(s) 22, 180
BciT130I CCWGG 1 cut(s) 234
BclI TGATCA 2 cut(s) 82, 349
BcnI CCSGG 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 136
BfrI CTTAAG 1 cut(s) 427
BisI GCNGC 2 cut(s) 111, 311
BlsI GCNGC 2 cut(s) 112, 312
Bme1390I CCNGG 2 cut(s) 24, 234
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 2 cut(s) 24, 234
BpuMI CCSGG 1 cut(s) 24
BsaBI GATNNNNATC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 233
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 45, 234, 379
Bse3DI GCAATG 1 cut(s) 291
Bse8I GATNNNNATC 1 cut(s) 87
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 233
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 4 cut(s) 29, 45, 234, 379
BseMI GCAATG 1 cut(s) 291
BseX3I CGGCCG 1 cut(s) 311
BseXI GCAGC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 401
Bsh1285I CGRYCG 1 cut(s) 314
BshFI GGCC 1 cut(s) 313
BsiEI CGRYCG 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 372
BsiSI CCGG 2 cut(s) 24, 314
BslI CCNNNNNNNGG 4 cut(s) 29, 45, 234, 379
BsmAI GTCTC 1 cut(s) 243
BsnI GGCC 1 cut(s) 313
Bso31I GGTCTC 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 5 cut(s) 19, 82, 88, 279, 349
Bsp68I TCGCGA 1 cut(s) 401
BspACI CCGC 3 cut(s) 119, 296, 310
BspANI GGCC 1 cut(s) 313
BspFNI CGCG 1 cut(s) 401
BspHI TCATGA 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 50
BspPI GGATC 3 cut(s) 14, 83, 287
BspQI GCTCTTC 1 cut(s) 360
BspTI CTTAAG 1 cut(s) 427
BspTNI GGTCTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 233
BssMI GATC 5 cut(s) 19, 82, 88, 279, 349
Bst2UI CCWGG 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 360
BstAFI CTTAAG 1 cut(s) 427
BstFNI CGCG 1 cut(s) 401
BstKTI GATC 5 cut(s) 22, 85, 91, 282, 352
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 5 cut(s) 19, 82, 88, 279, 349
BstMCI CGRYCG 1 cut(s) 314
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 22, 232
BstSFI CTRYAG 1 cut(s) 136
BstUI CGCG 1 cut(s) 401
BstV1I GCAGC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 279
BstYI RGATCY 1 cut(s) 279
BstZI CGGCCG 1 cut(s) 311
BsuRI GGCC 1 cut(s) 313
BtgZI GCGATG 1 cut(s) 416
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
BtuMI TCGCGA 1 cut(s) 401
CciI TCATGA 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 225
Csp6I GTAC 1 cut(s) 190
CviAII CATG 4 cut(s) 86, 196, 245, 458
CviJI RGCY 7 cut(s) 51, 110, 313, 326, 370, 388, 437
CviKI_1 RGCY 7 cut(s) 51, 110, 313, 326, 370, 388, 437
CviQI GTAC 1 cut(s) 190
DpnI GATC 5 cut(s) 21, 84, 90, 281, 351
DpnII GATC 5 cut(s) 19, 82, 88, 279, 349
DrdI GACNNNNNNGTC 1 cut(s) 460
DseDI GACNNNNNNGTC 1 cut(s) 460
EaeI YGGCCR 1 cut(s) 311
EagI CGGCCG 1 cut(s) 311
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
Ecl136II GAGCTC 1 cut(s) 370
EclXI CGGCCG 1 cut(s) 311
Eco24I GRGCYC 1 cut(s) 372
Eco31I GGTCTC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 225
Eco52I CGGCCG 1 cut(s) 311
Eco53kI GAGCTC 1 cut(s) 370
EcoICRI GAGCTC 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 372
FaeI CATG 4 cut(s) 89, 199, 248, 461
FaiI YATR 9 cut(s) 46, 87, 98, 197, 246, 254, 378, 380, 459
FatI CATG 4 cut(s) 85, 195, 244, 457
FauNDI CATATG 1 cut(s) 378
FbaI TGATCA 2 cut(s) 82, 349
Fnu4HI GCNGC 2 cut(s) 111, 311
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 2 cut(s) 111, 311
GluI GCNGC 2 cut(s) 111, 311
HaeIII GGCC 1 cut(s) 313
HapII CCGG 2 cut(s) 24, 314
Hin1II CATG 4 cut(s) 89, 199, 248, 461
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 2 cut(s) 317, 454
HpaII CCGG 2 cut(s) 24, 314
HphI GGTGA 1 cut(s) 274
Hpy188I TCNGA 2 cut(s) 19, 322
Hpy188III TCNNGA 2 cut(s) 86, 400
HpyAV CCTTC 1 cut(s) 331
HpyCH4V TGCA 2 cut(s) 199, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
Hsp92II CATG 4 cut(s) 89, 199, 248, 461
Ksp22I TGATCA 2 cut(s) 82, 349
Kzo9I GATC 5 cut(s) 19, 82, 88, 279, 349
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 2 cut(s) 48, 375
LpnPI CCDG 9 cut(s) 37, 65, 134, 148, 161, 219, 246, 327, 370
Lsp1109I GCAGC 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 451
MalI GATC 5 cut(s) 21, 84, 90, 281, 351
MboI GATC 5 cut(s) 19, 82, 88, 279, 349
MboII GAAGA 4 cut(s) 71, 274, 377, 415
MflI RGATCY 1 cut(s) 279
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 3 cut(s) 143, 286, 417
MlyI GAGTC 2 cut(s) 326, 448
MmeI TCCRAC 2 cut(s) 36, 300
MnlI CCTC 1 cut(s) 49
MseI TTAA 4 cut(s) 65, 267, 428, 484
MslI CAYNNNNRTG 1 cut(s) 296
MspCI CTTAAG 1 cut(s) 427
MspI CCGG 2 cut(s) 24, 314
MspR9I CCNGG 2 cut(s) 24, 234
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 1 cut(s) 401
MwoI GCNNNNNNNGC 1 cut(s) 116
NciI CCSGG 1 cut(s) 24
NdeI CATATG 1 cut(s) 378
NdeII GATC 5 cut(s) 19, 82, 88, 279, 349
NlaIII CATG 4 cut(s) 89, 199, 248, 461
NlaIV GGNNCC 1 cut(s) 50
NmeAIII GCCGAG 1 cut(s) 220
NmuCI GTSAC 1 cut(s) 451
NruI TCGCGA 1 cut(s) 401
NspI RCATGY 1 cut(s) 199
PagI TCATGA 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 360
PkrI GCNGC 2 cut(s) 112, 312
PleI GAGTC 2 cut(s) 325, 448
PpsI GAGTC 2 cut(s) 325, 448
Psp124BI GAGCTC 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 1 cut(s) 225
PsuI RGATCY 1 cut(s) 279
RruI TCGCGA 1 cut(s) 401
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 296
SacI GAGCTC 1 cut(s) 372
SapI GCTCTTC 1 cut(s) 360
SaqAI TTAA 4 cut(s) 65, 267, 428, 484
SatI GCNGC 2 cut(s) 111, 311
Sau3AI GATC 5 cut(s) 19, 82, 88, 279, 349
Sau96I GGNCC 1 cut(s) 225
SchI GAGTC 2 cut(s) 326, 448
ScrFI CCNGG 2 cut(s) 24, 234
SduI GDGCHC 1 cut(s) 372
SetI ASST 4 cut(s) 137, 328, 372, 434
SfcI CTRYAG 1 cut(s) 136
SinI GGWCC 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 427
SmoI CTYRAG 1 cut(s) 427
Sse9I AATT 3 cut(s) 143, 286, 417
SsiI CCGC 3 cut(s) 119, 296, 310
SstI GAGCTC 1 cut(s) 372
StyD4I CCNGG 2 cut(s) 22, 232
TasI AATT 3 cut(s) 143, 286, 417
TauI GCSGC 1 cut(s) 313
Tru1I TTAA 4 cut(s) 65, 267, 428, 484
Tru9I TTAA 4 cut(s) 65, 267, 428, 484
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 1 cut(s) 280
TspRI CASTG 1 cut(s) 121
Vha464I CTTAAG 1 cut(s) 427
VpaK11BI GGWCC 1 cut(s) 225
XapI RAATTY 1 cut(s) 143
XceI RCATGY 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.