Rorug02G0619200

acyl-activating enzyme

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
73646887 .. 73649259
2373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0619200.1

Sequence Viewer

Length: 1497 bp
ATGAGTACTTTCAAACTAAGCAGCCTGGCATTGATTGTGCTCATTGCCTTTTCTATTTGGTCTTCGAGCTTGTTGGAGACTTGTGAAGCTAGAAAAGGCAAGCATCATCAATGGAGGAAAAACCAAGGGGTGAAAAGGGATTATGGCGGTCATCATCAACATCATCACCCTTCAGGCCACACTCTGTCGGCTTTGAAAAGTGACAATTACATCACACCAGAAGATATTGCTGTGAGTGCAGCACAGAAGAATAGTGCCGTCTACAATGTGTTGGACTACGGTGCTAAAGGAGATGGAAAGGCAGATGACACAAAGGCATTCGCAGCAGCATGGGCAGCAGCGTGCAAAGTGCAAGCATCAACCGTAACTGTTCCATCTGGGTCTGTATTCCTTGTCAAACCTATCTCTTTCTCCGGCCCTAATTGTCAAACAGACATTGTATTTCAGTTAGATGGAAAAATCATAGCCCCGACAGGCGCGGGAGCGTGGGGTTCAGGCCTTCTACAATGGCTTGAGTTCACAAAGCTTCAAAGACTTACCATCAGAGGTAAAGGTGTGATTGATGGACAAGGTGCAGTTTGGTGGAATGACTCGCCCACATACGATCCTACAGATGAAACAGCAGACAACAGTACAGAAGATTCGCAGACCGTAGACAGTTACAGTGGAAAAATGCCAAGCACAAAACCAACAGCGCTTAGGTTCTATGGAAGCAACGGTGTGACAGTCACTGGCATAACAATTCAAAACAGCCCTCAAACCCACCTCAAGTTTGACTCCTGCACTAATGTACAAGTTTCTGCCGTAACTATTTCATCCCCTGGCAACAGCCCCAACACTGATGGAATCCACCTTCAAAACTCCCAGGATGTGGTCATTTCCGGCGCAAGCCTTGCTTGTGGAGATGATTGTATATCAATACAAACTGGTTGCTCAAACGTATTCATACACAATGTAAACTGTGGACCTGGACATGGAGTCAGCATTGGAGGGCTAGGAAAGGATGGCACCAAAGCTTGTGTGTCAAACATCACCGTCCGAGATGTTAAAATGCAAAATACACTGAACGGAGTCAGAATAAAGACCTGGCAGGGAGGATCAGGGTCAGTAAAAAATGTCATGTTCGCAAACATTCAAGTCTCAGAAGTTGAATTCCCTATCATGATTGACCAATACTACTGTGACAAGGGGCATTGCGCAAACAAAACCTCAGCTGTGGCAGTTTCGGGTATAAACTACGTAAACATTCAAGGAACCTATACATCAAAACCTGCACATTTTGCATGCAGTGACAGCATGCCATGTACTGGTGTATCCCTAGACACCATAGACCTAAAATCAGTTCAATCAGGGATGCACTTGTATGACCCTTTCTGTTGGGAGGCATATGGAGACCTCAAGACAAACACTGTCCCCCCAATCGATTGCTTGATGAAAGGAAAGCCATCTTCAAGCAGCAGCACAGTCCAGTCTCAAGGTGGTGGCTATTCTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

498

Amino Acids

52.92

Weight (kDa)

6.72

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pect-lyase_RHGA_epim PF12708 88 - 135 1.7e-06 Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28 PF00295 117 - 448 2.8e-79 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1198
Acc36I ACCTGC 1 cut(s) 1279
AccB1I GGYRCC 1 cut(s) 1007
AccB7I CCANNNNNTGG 2 cut(s) 871, 1307
AccI GTMKAC 2 cut(s) 261, 654
AccII CGCG 1 cut(s) 479
AciI CCGC 2 cut(s) 147, 479
AclWI GGATC 2 cut(s) 599, 1105
AcsI RAATTY 1 cut(s) 1151
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 4 cut(s) 7, 634, 792, 1306
AfeI AGCGCT 1 cut(s) 696
AfiI CCNNNNNNNGG 3 cut(s) 871, 974, 1307
AhdI GACNNNNNGTC 1 cut(s) 977
AjnI CCWGG 5 cut(s) 24, 820, 864, 967, 1085
AluBI AGCT 5 cut(s) 69, 89, 526, 1016, 1214
AluI AGCT 5 cut(s) 69, 89, 526, 1016, 1214
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 4 cut(s) 71, 1144, 1386, 1476
AlwI GGATC 2 cut(s) 599, 1105
AlwNI CAGNNNCTG 1 cut(s) 731
Aor51HI AGCGCT 1 cut(s) 696
AoxI GGCC 3 cut(s) 175, 415, 496
ApeKI GCWGC 8 cut(s) 21, 239, 323, 326, 335, 338, 1455, 1458
ApoI RAATTY 1 cut(s) 1151
AspLEI GCGC 4 cut(s) 479, 697, 887, 1199
AspS9I GGNCC 2 cut(s) 416, 965
AsuHPI GGTGA 3 cut(s) 142, 158, 1024
AvaII GGWCC 1 cut(s) 965
BaeI ACNNNNGTAYC 2 cut(s) 1296, 1329
BanI GGYRCC 1 cut(s) 1007
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 42
BbvCI CCTCAGC 1 cut(s) 1210
BbvI GCAGC 8 cut(s) 33, 251, 335, 338, 347, 350, 1467, 1470
BccI CCATC 8 cut(s) 287, 382, 446, 548, 557, 836, 998, 1453
BceAI ACGGC 2 cut(s) 242, 788
BciT130I CCWGG 5 cut(s) 26, 822, 866, 969, 1087
BciVI GTATCC 1 cut(s) 1324
BcoDI GTCTC 4 cut(s) 71, 1144, 1386, 1476
BfaI CTAG 3 cut(s) 90, 995, 1319
BfmI CTRYAG 1 cut(s) 609
BfoI RGCGCY 1 cut(s) 698
BfuAI ACCTGC 1 cut(s) 1279
BfuI GTATCC 1 cut(s) 1324
BisI GCNGC 8 cut(s) 22, 240, 324, 327, 336, 339, 1456, 1459
BlsI GCNGC 8 cut(s) 23, 241, 325, 328, 337, 340, 1457, 1460
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 5 cut(s) 26, 822, 866, 969, 1087
Bme18I GGWCC 1 cut(s) 965
BmeRI GACNNNNNGTC 1 cut(s) 977
BmgT120I GGNCC 2 cut(s) 416, 965
BmiI GGNNCC 2 cut(s) 1009, 1255
BmrFI CCNGG 5 cut(s) 26, 822, 866, 969, 1087
BmsI GCATC 3 cut(s) 112, 365, 1344
BpiI GAAGAC 1 cut(s) 54
Bpu10I CCTNAGC 2 cut(s) 698, 1210
BpuEI CTTGAG 4 cut(s) 533, 752, 1382, 1458
Bsa29I ATCGAT 1 cut(s) 1422
BsaAI YACGTR 1 cut(s) 1240
BsaI GGTCTC 1 cut(s) 1386
BsaJI CCNNGG 3 cut(s) 124, 820, 864
Bsc4I CCNNNNNNNGG 3 cut(s) 871, 974, 1307
Bse1I ACTGG 4 cut(s) 736, 931, 1312, 1468
Bse3DI GCAATG 2 cut(s) 42, 1192
BseBI CCWGG 5 cut(s) 26, 822, 866, 969, 1087
BseCI ATCGAT 1 cut(s) 1422
BseDI CCNNGG 3 cut(s) 124, 820, 864
BseGI GGATG 4 cut(s) 815, 874, 1009, 1359
BseLI CCNNNNNNNGG 3 cut(s) 871, 974, 1307
BseMI GCAATG 2 cut(s) 42, 1192
BseMII CTCAG 2 cut(s) 1155, 1224
BseNI ACTGG 4 cut(s) 736, 931, 1312, 1468
BseXI GCAGC 8 cut(s) 33, 251, 335, 338, 347, 350, 1467, 1470
BsgI GTGCAG 4 cut(s) 258, 594, 766, 1257
Bsh1236I CGCG 1 cut(s) 479
BshFI GGCC 3 cut(s) 177, 417, 498
BshNI GGYRCC 1 cut(s) 1007
BshVI ATCGAT 1 cut(s) 1422
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 2 cut(s) 414, 882
BslFI GGGAC 1 cut(s) 1397
BslI CCNNNNNNNGG 3 cut(s) 871, 974, 1307
BsmAI GTCTC 4 cut(s) 71, 1144, 1386, 1476
BsmFI GGGAC 1 cut(s) 1397
BsmI GAATGC 1 cut(s) 317
BsnI GGCC 3 cut(s) 177, 417, 498
Bso31I GGTCTC 1 cut(s) 1386
Bsp1286I GDGCHC 1 cut(s) 42
Bsp1407I TGTACA 1 cut(s) 790
Bsp143I GATC 2 cut(s) 604, 1097
BspACI CCGC 2 cut(s) 147, 479
BspANI GGCC 3 cut(s) 177, 417, 498
BspCNI CTCAG 2 cut(s) 1154, 1223
BspDI ATCGAT 1 cut(s) 1422
BspFNI CGCG 1 cut(s) 479
BspHI TCATGA 1 cut(s) 1161
BspLI GGNNCC 2 cut(s) 1009, 1255
BspMI ACCTGC 1 cut(s) 1279
BspPI GGATC 2 cut(s) 599, 1105
BspT107I GGYRCC 1 cut(s) 1007
BspTNI GGTCTC 1 cut(s) 1386
BsrDI GCAATG 2 cut(s) 42, 1192
BsrGI TGTACA 1 cut(s) 790
BsrI ACTGG 4 cut(s) 736, 931, 1312, 1468
BssECI CCNNGG 3 cut(s) 124, 820, 864
BssMI GATC 2 cut(s) 604, 1097
BssT1I CCWWGG 1 cut(s) 124
Bst2UI CCWGG 5 cut(s) 26, 822, 866, 969, 1087
BstAPI GCANNNNNTGC 2 cut(s) 893, 1280
BstAUI TGTACA 1 cut(s) 790
BstBAI YACGTR 1 cut(s) 1240
BstC8I GCNNGC 6 cut(s) 101, 343, 354, 889, 1285, 1298
BstDEI CTNAG 4 cut(s) 17, 698, 1141, 1210
BstF5I GGATG 4 cut(s) 815, 874, 1009, 1359
BstFNI CGCG 1 cut(s) 479
BstH2I RGCGCY 1 cut(s) 698
BstHHI GCGC 4 cut(s) 479, 697, 887, 1199
BstKTI GATC 2 cut(s) 607, 1100
BstMAI GTCTC 4 cut(s) 71, 1144, 1386, 1476
BstMBI GATC 2 cut(s) 604, 1097
BstMWI GCNNNNNNNGC 8 cut(s) 236, 323, 332, 335, 893, 1280, 1293, 1491
BstNI CCWGG 5 cut(s) 26, 822, 866, 969, 1087
BstNSI RCATGY 2 cut(s) 1287, 1300
BstSCI CCNGG 5 cut(s) 24, 820, 864, 967, 1085
BstSFI CTRYAG 1 cut(s) 609
BstSNI TACGTA 1 cut(s) 1240
BstUI CGCG 1 cut(s) 479
BstV1I GCAGC 8 cut(s) 33, 251, 335, 338, 347, 350, 1467, 1470
BstV2I GAAGAC 1 cut(s) 54
Bsu15I ATCGAT 1 cut(s) 1422
BsuI GTATCC 1 cut(s) 1324
BsuRI GGCC 3 cut(s) 177, 417, 498
BsuTUI ATCGAT 1 cut(s) 1422
BtsCI GGATG 4 cut(s) 815, 874, 1009, 1359
BtsI GCAGTG 1 cut(s) 1294
BtsIMutI CAGTG 6 cut(s) 670, 729, 837, 1061, 1294, 1407
BveI ACCTGC 1 cut(s) 1279
Cac8I GCNNGC 6 cut(s) 101, 343, 354, 889, 1285, 1298
CaiI CAGNNNCTG 1 cut(s) 731
CciI TCATGA 1 cut(s) 1161
CfoI GCGC 4 cut(s) 479, 697, 887, 1199
Cfr13I GGNCC 2 cut(s) 416, 965
ClaI ATCGAT 1 cut(s) 1422
Csp6I GTAC 4 cut(s) 6, 633, 791, 1305
CviAII CATG 7 cut(s) 330, 974, 1120, 1162, 1284, 1297, 1302
CviQI GTAC 4 cut(s) 6, 633, 791, 1305
DdeI CTNAG 4 cut(s) 17, 698, 1141, 1210
DpnI GATC 2 cut(s) 606, 1099
DpnII GATC 2 cut(s) 604, 1097
DriI GACNNNNNGTC 1 cut(s) 977
Eam1105I GACNNNNNGTC 1 cut(s) 977
Eco105I TACGTA 1 cut(s) 1240
Eco130I CCWWGG 1 cut(s) 124
Eco147I AGGCCT 1 cut(s) 498
Eco31I GGTCTC 1 cut(s) 1386
Eco47I GGWCC 1 cut(s) 965
Eco47III AGCGCT 1 cut(s) 696
Eco57I CTGAAG 1 cut(s) 156
EcoRI GAATTC 1 cut(s) 1151
EcoRII CCWGG 5 cut(s) 24, 820, 864, 967, 1085
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 7 cut(s) 333, 977, 1123, 1165, 1287, 1300, 1305
FalI AAGNNNNNCTT 2 cut(s) 880, 912
FaqI GGGAC 1 cut(s) 1397
FatI CATG 7 cut(s) 329, 973, 1119, 1161, 1283, 1296, 1301
FauI CCCGC 1 cut(s) 472
FauNDI CATATG 1 cut(s) 1387
FblI GTMKAC 2 cut(s) 261, 654
Fnu4HI GCNGC 8 cut(s) 22, 240, 324, 327, 336, 339, 1456, 1459
FokI GGATG 4 cut(s) 802, 881, 1016, 1366
Fsp4HI GCNGC 8 cut(s) 22, 240, 324, 327, 336, 339, 1456, 1459
FspBI CTAG 3 cut(s) 90, 995, 1319
FspI TGCGCA 1 cut(s) 1198
GlaI GCGC 4 cut(s) 478, 696, 886, 1198
GluI GCNGC 8 cut(s) 22, 240, 324, 327, 336, 339, 1456, 1459
HaeII RGCGCY 1 cut(s) 698
HaeIII GGCC 3 cut(s) 177, 417, 498
HapII CCGG 2 cut(s) 414, 882
HhaI GCGC 4 cut(s) 479, 697, 887, 1199
Hin1II CATG 7 cut(s) 333, 977, 1123, 1165, 1287, 1300, 1305
Hin6I GCGC 4 cut(s) 477, 695, 885, 1197
HinP1I GCGC 4 cut(s) 477, 695, 885, 1197
HindIII AAGCTT 2 cut(s) 524, 1014
HinfI GANTC 6 cut(s) 590, 641, 776, 846, 978, 1071
HpaII CCGG 2 cut(s) 414, 882
HphI GGTGA 3 cut(s) 142, 158, 1024
Hpy166II GTNNAC 6 cut(s) 262, 519, 655, 958, 965, 1243
Hpy188I TCNGA 4 cut(s) 545, 1040, 1076, 1144
Hpy188III TCNNGA 2 cut(s) 1162, 1399
Hpy8I GTNNAC 6 cut(s) 262, 519, 655, 958, 965, 1243
HpyAV CCTTC 3 cut(s) 180, 509, 863
HpyCH4IV ACGT 2 cut(s) 939, 1239
HpyF10VI GCNNNNNNNGC 8 cut(s) 236, 323, 332, 335, 893, 1280, 1293, 1491
HpyF3I CTNAG 4 cut(s) 17, 698, 1141, 1210
HpySE526I ACGT 2 cut(s) 939, 1239
Hsp92II CATG 7 cut(s) 333, 977, 1123, 1165, 1287, 1300, 1305
HspAI GCGC 4 cut(s) 477, 695, 885, 1197
Kzo9I GATC 2 cut(s) 604, 1097
LmnI GCTCC 1 cut(s) 482
Lsp1109I GCAGC 8 cut(s) 33, 251, 335, 338, 347, 350, 1467, 1470
LweI GCATC 3 cut(s) 112, 365, 1344
MaeI CTAG 3 cut(s) 90, 995, 1319
MaeII ACGT 2 cut(s) 939, 1239
MaeIII GTNAC 8 cut(s) 200, 364, 659, 721, 727, 805, 1181, 1289
MalI GATC 2 cut(s) 606, 1099
MboI GATC 2 cut(s) 604, 1097
MboII GAAGA 5 cut(s) 54, 233, 259, 650, 1440
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 4 cut(s) 205, 421, 741, 1151
MlyI GAGTC 4 cut(s) 584, 770, 987, 1080
MmeI TCCRAC 2 cut(s) 54, 252
MnlI CCTC 9 cut(s) 108, 539, 765, 776, 983, 1088, 1219, 1375, 1406
MseI TTAA 1 cut(s) 1047
MslI CAYNNNNRTG 1 cut(s) 1362
MspA1I CMGCKG 1 cut(s) 1214
MspI CCGG 2 cut(s) 414, 882
MspR9I CCNGG 5 cut(s) 26, 822, 866, 969, 1087
Mva1269I GAATGC 1 cut(s) 317
MvaI CCWGG 5 cut(s) 26, 822, 866, 969, 1087
MvnI CGCG 1 cut(s) 479
MwoI GCNNNNNNNGC 8 cut(s) 236, 323, 332, 335, 893, 1280, 1293, 1491
NdeI CATATG 1 cut(s) 1387
NdeII GATC 2 cut(s) 604, 1097
NlaIII CATG 7 cut(s) 333, 977, 1123, 1165, 1287, 1300, 1305
NlaIV GGNNCC 2 cut(s) 1009, 1255
NmuCI GTSAC 5 cut(s) 200, 721, 727, 1181, 1289
NsbI TGCGCA 1 cut(s) 1198
NspI RCATGY 2 cut(s) 1287, 1300
PaeI GCATGC 2 cut(s) 1287, 1300
PagI TCATGA 1 cut(s) 1161
PceI AGGCCT 1 cut(s) 498
PctI GAATGC 1 cut(s) 317
PfeI GAWTC 2 cut(s) 641, 846
PflMI CCANNNNNTGG 2 cut(s) 871, 1307
PkrI GCNGC 8 cut(s) 23, 241, 325, 328, 337, 340, 1457, 1460
PleI GAGTC 4 cut(s) 584, 770, 986, 1079
PpsI GAGTC 4 cut(s) 584, 770, 986, 1079
Ppu21I YACGTR 1 cut(s) 1240
Psp6I CCWGG 5 cut(s) 24, 820, 864, 967, 1085
PspGI CCWGG 5 cut(s) 24, 820, 864, 967, 1085
PspN4I GGNNCC 2 cut(s) 1009, 1255
PspPI GGNCC 2 cut(s) 416, 965
PstNI CAGNNNCTG 1 cut(s) 731
PvuII CAGCTG 1 cut(s) 1214
RsaI GTAC 4 cut(s) 7, 634, 792, 1306
RsaNI GTAC 4 cut(s) 6, 633, 791, 1305
RseI CAYNNNNRTG 1 cut(s) 1362
SaqAI TTAA 1 cut(s) 1047
SatI GCNGC 8 cut(s) 22, 240, 324, 327, 336, 339, 1456, 1459
Sau3AI GATC 2 cut(s) 604, 1097
Sau96I GGNCC 2 cut(s) 416, 965
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 4 cut(s) 584, 770, 987, 1080
ScrFI CCNGG 5 cut(s) 26, 822, 866, 969, 1087
SduI GDGCHC 1 cut(s) 42
SfaNI GCATC 3 cut(s) 112, 365, 1344
SfcI CTRYAG 1 cut(s) 609
SinI GGWCC 1 cut(s) 965
SmiMI CAYNNNNRTG 1 cut(s) 1362
SmlI CTYRAG 4 cut(s) 512, 767, 1397, 1473
SmoI CTYRAG 4 cut(s) 512, 767, 1397, 1473
SnaBI TACGTA 1 cut(s) 1240
SphI GCATGC 2 cut(s) 1287, 1300
Sse9I AATT 4 cut(s) 205, 421, 741, 1151
SseBI AGGCCT 1 cut(s) 498
SsiI CCGC 2 cut(s) 147, 479
SspMI CTAG 3 cut(s) 90, 995, 1319
StuI AGGCCT 1 cut(s) 498
StyD4I CCNGG 5 cut(s) 24, 820, 864, 967, 1085
StyI CCWWGG 1 cut(s) 124
TaiI ACGT 2 cut(s) 942, 1242
TaqI TCGA 2 cut(s) 65, 1422
TasI AATT 4 cut(s) 205, 421, 741, 1151
TatI WGTACW 4 cut(s) 5, 632, 790, 1304
TfiI GAWTC 2 cut(s) 641, 846
Tru1I TTAA 1 cut(s) 1047
Tru9I TTAA 1 cut(s) 1047
TscAI CASTG 6 cut(s) 670, 736, 844, 1068, 1294, 1414
TseFI GTSAC 5 cut(s) 200, 721, 727, 1181, 1289
TseI GCWGC 8 cut(s) 21, 239, 323, 326, 335, 338, 1455, 1458
Tsp45I GTSAC 5 cut(s) 200, 721, 727, 1181, 1289
TspDTI ATGAA 4 cut(s) 630, 804, 934, 1448
TspGWI ACGGA 1 cut(s) 1083
TspRI CASTG 6 cut(s) 670, 736, 844, 1068, 1294, 1414
Van91I CCANNNNNTGG 2 cut(s) 871, 1307
VpaK11BI GGWCC 1 cut(s) 965
XapI RAATTY 1 cut(s) 1151
XceI RCATGY 2 cut(s) 1287, 1300
XcmI CCANNNNNNNNNTGG 1 cut(s) 1475
XmiI GTMKAC 2 cut(s) 261, 654
XspI CTAG 3 cut(s) 90, 995, 1319
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.