Rh3DG279100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0014846
Physical Location & Seq
Forward (+)
28293152 .. 28297819
4668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG279100.1

Sequence Viewer

Length: 489 bp
ATGCTTCGTCTCTCTCCTCTGAAGGCGGTGTGGGCTGTTCTGATGGCTGGATCGAGCGGGGCTTCTCTGAACTGGGGACCCAGGTTTGCAGTTTGGAGATGGGGTTGCGATTGGGTTGAGCTTGACATTCGATGTAGCGGTATTACAGGGTGGAACCTCCGGGATCAGCAAGAAGATGGGGCAATACATCAGGGCAGATGGTGGTTGACGGTTTCGAGCCTATGGAGGCTATGCAGCGGTGTTTTTGGAAGATGGCAATGGCTGGAGACCTTGTGGGTTCGAGATCTGAAACTGGGTGATGGGGTTGAATTGATGTTTTGGGTCTTTGGATGGGTGTTCATCGGTGGCTGGGTTGGCATCAAGTTGCTATGTCGAAGAGGGCGGTGGTCGTGTTTCGTTAACCCCCAATGCTCTTGCAGCTGGATGACGGTGGCCATCGCGCAGATGGAGGCGGCGGTCTTGGAGAGGATAGTTGTTCGTGGAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.63

Weight (kDa)

9.05

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 57
AccII CGCG 1 cut(s) 440
AciI CCGC 7 cut(s) 26, 57, 138, 237, 382, 452, 455
AclWI GGATC 2 cut(s) 58, 171
AcoI YGGCCR 1 cut(s) 432
AcuI CTGAAG 1 cut(s) 41
AgsI TTSAA 1 cut(s) 308
AjnI CCWGG 1 cut(s) 80
AluBI AGCT 2 cut(s) 121, 420
AluI AGCT 2 cut(s) 121, 420
Alw26I GTCTC 2 cut(s) 14, 260
AlwI GGATC 2 cut(s) 58, 171
AoxI GGCC 1 cut(s) 432
ApeKI GCWGC 2 cut(s) 234, 417
AspLEI GCGC 1 cut(s) 442
AspS9I GGNCC 1 cut(s) 77
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 308
AvaII GGWCC 1 cut(s) 77
BalI TGGCCA 1 cut(s) 434
BbvI GCAGC 2 cut(s) 246, 429
BccI CCATC 9 cut(s) 37, 93, 170, 192, 246, 293, 324, 439, 443
BciT130I CCWGG 1 cut(s) 82
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 2 cut(s) 14, 260
BglII AGATCT 1 cut(s) 283
BisI GCNGC 3 cut(s) 235, 418, 453
BlsI GCNGC 3 cut(s) 236, 419, 454
Bme1390I CCNGG 2 cut(s) 82, 161
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 3 cut(s) 78, 79, 155
BmrFI CCNGG 2 cut(s) 82, 161
BmrI ACTGGG 2 cut(s) 82, 302
BmsI GCATC 1 cut(s) 366
BmuI ACTGGG 2 cut(s) 82, 302
BpmI CTGGAG 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 161
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 80
BsaXI ACNNNNNCTCC 4 cut(s) 88, 118, 257, 287
Bse1I ACTGG 2 cut(s) 77, 297
Bse3DI GCAATG 1 cut(s) 263
BseBI CCWGG 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 2 cut(s) 335, 429
BseMI GCAATG 1 cut(s) 263
BseNI ACTGG 2 cut(s) 77, 297
BseRI GAGGAG 1 cut(s) 6
BseXI GCAGC 2 cut(s) 246, 429
BseYI CCCAGC 1 cut(s) 348
Bsh1236I CGCG 1 cut(s) 440
BshFI GGCC 1 cut(s) 434
BsiSI CCGG 1 cut(s) 160
BslFI GGGAC 1 cut(s) 90
BsmAI GTCTC 2 cut(s) 14, 260
BsmBI CGTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 90
BsnI GGCC 1 cut(s) 434
Bso31I GGTCTC 1 cut(s) 260
Bsp143I GATC 3 cut(s) 50, 163, 283
BspACI CCGC 7 cut(s) 26, 57, 138, 237, 382, 452, 455
BspANI GGCC 1 cut(s) 434
BspFNI CGCG 1 cut(s) 440
BspLI GGNNCC 3 cut(s) 78, 79, 155
BspPI GGATC 2 cut(s) 58, 171
BspTNI GGTCTC 1 cut(s) 260
BsrBI CCGCTC 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 263
BsrI ACTGG 2 cut(s) 77, 297
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 3 cut(s) 50, 163, 283
Bst2UI CCWGG 1 cut(s) 82
Bst4CI ACNGT 2 cut(s) 211, 430
Bst6I CTCTTC 1 cut(s) 370
BstF5I GGATG 2 cut(s) 335, 429
BstFNI CGCG 1 cut(s) 440
BstHHI GCGC 1 cut(s) 442
BstKTI GATC 3 cut(s) 53, 166, 286
BstMAI GTCTC 2 cut(s) 14, 260
BstMBI GATC 3 cut(s) 50, 163, 283
BstMWI GCNNNNNNNGC 3 cut(s) 32, 354, 417
BstNI CCWGG 1 cut(s) 82
BstSCI CCNGG 2 cut(s) 80, 159
BstUI CGCG 1 cut(s) 440
BstV1I GCAGC 2 cut(s) 246, 429
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 1 cut(s) 434
BtgZI GCGATG 1 cut(s) 421
BtsCI GGATG 2 cut(s) 335, 429
CfoI GCGC 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 77
DpnI GATC 3 cut(s) 52, 165, 285
DpnII GATC 3 cut(s) 50, 163, 283
EaeI YGGCCR 1 cut(s) 432
Eam1104I CTCTTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 370
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 80
Esp3I CGTCTC 1 cut(s) 14
FaiI YATR 3 cut(s) 223, 232, 370
FaqI GGGAC 1 cut(s) 90
FauI CCCGC 1 cut(s) 50
Fnu4HI GCNGC 3 cut(s) 235, 418, 453
FokI GGATG 2 cut(s) 342, 436
Fsp4HI GCNGC 3 cut(s) 235, 418, 453
GlaI GCGC 1 cut(s) 441
GluI GCNGC 3 cut(s) 235, 418, 453
GsaI CCCAGC 1 cut(s) 352
GsuI CTGGAG 1 cut(s) 284
HaeIII GGCC 1 cut(s) 434
HapII CCGG 1 cut(s) 160
HhaI GCGC 1 cut(s) 442
Hin6I GCGC 1 cut(s) 440
HinP1I GCGC 1 cut(s) 440
HincII GTYRAC 2 cut(s) 207, 400
HindII GTYRAC 2 cut(s) 207, 400
HpaI GTTAAC 1 cut(s) 400
HpaII CCGG 1 cut(s) 160
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 2 cut(s) 207, 400
Hpy188I TCNGA 4 cut(s) 21, 42, 69, 288
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 2 cut(s) 207, 400
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 2 cut(s) 211, 430
HpyCH4V TGCA 3 cut(s) 89, 234, 417
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 354, 417
HspAI GCGC 1 cut(s) 440
KflI GGGWCCC 1 cut(s) 77
KspAI GTTAAC 1 cut(s) 400
Kzo9I GATC 3 cut(s) 50, 163, 283
Lsp1109I GCAGC 2 cut(s) 246, 429
LweI GCATC 1 cut(s) 366
MalI GATC 3 cut(s) 52, 165, 285
MbiI CCGCTC 1 cut(s) 57
MboI GATC 3 cut(s) 50, 163, 283
MboII GAAGA 3 cut(s) 185, 261, 387
MflI RGATCY 1 cut(s) 283
MlsI TGGCCA 1 cut(s) 434
MluCI AATT 1 cut(s) 308
MluNI TGGCCA 1 cut(s) 434
MnlI CCTC 6 cut(s) 27, 167, 219, 371, 442, 459
Mox20I TGGCCA 1 cut(s) 434
MscI TGGCCA 1 cut(s) 434
MseI TTAA 1 cut(s) 399
Msp20I TGGCCA 1 cut(s) 434
MspA1I CMGCKG 2 cut(s) 237, 420
MspI CCGG 1 cut(s) 160
MspR9I CCNGG 2 cut(s) 82, 161
MvaI CCWGG 1 cut(s) 82
MvnI CGCG 1 cut(s) 440
MwoI GCNNNNNNNGC 3 cut(s) 32, 354, 417
NciI CCSGG 1 cut(s) 161
NdeII GATC 3 cut(s) 50, 163, 283
NlaIV GGNNCC 3 cut(s) 78, 79, 155
PfoI TCCNGGA 1 cut(s) 159
PkrI GCNGC 3 cut(s) 236, 419, 454
PpuMI RGGWCCY 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 80
PspFI CCCAGC 1 cut(s) 348
PspGI CCWGG 1 cut(s) 80
PspN4I GGNNCC 3 cut(s) 78, 79, 155
PspPI GGNCC 1 cut(s) 77
PspPPI RGGWCCY 1 cut(s) 77
PsuI RGATCY 1 cut(s) 283
PvuII CAGCTG 1 cut(s) 420
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 3 cut(s) 235, 418, 453
Sau3AI GATC 3 cut(s) 50, 163, 283
Sau96I GGNCC 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 82, 161
SetI ASST 5 cut(s) 86, 123, 159, 272, 422
SfaNI GCATC 1 cut(s) 366
SinI GGWCC 1 cut(s) 77
Sse9I AATT 1 cut(s) 308
SsiI CCGC 7 cut(s) 26, 57, 138, 237, 382, 452, 455
StyD4I CCNGG 2 cut(s) 80, 159
TaaI ACNGT 2 cut(s) 211, 430
TaqI TCGA 5 cut(s) 53, 130, 215, 280, 373
TasI AATT 1 cut(s) 308
TauI GCSGC 1 cut(s) 455
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TseI GCWGC 2 cut(s) 234, 417
TspDTI ATGAA 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 77
XcmI CCANNNNNNNNNTGG 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.