Rh7BG387700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014846
Physical Location & Seq
Forward (+)
42216189 .. 42219682
3494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG387700.1

Sequence Viewer

Length: 651 bp
ATGGCTGGATCGAGCGGGGCTTCTCTGAACTGGGGACCCAGGTTTGCAGTTTGGAGATGGGGTTGCAATCTGGTTGGGTTTGACATTCGATGTAGCGGTATTACATGGTGGAACCTCCGGGATCAGCAAGAAGATGGAGCAATACATCAGGGCAGATGGTGGTTGACGGTTTCGAGCCTATGGAGGCTATGCAGCGGTGTTTTTGGAAGATGGCGATGGTTGGAGACCTTGTGGGCTCGAGATCTGAAACTGGGTGATGGGGTTGAATTGATGTTTGGGGTCTTTGGATGGGTGATCATCGGTGGCTGGGTTGGCATCAAGTTGCTATGTCGAAGAGGGCGGTGGTCGTGTTTCGTTAACCCCCAATGCTCTTGCAGCGGGATGATGGTGGCCATCGGGCAGATGGAGGCGGCGGTCTTGGAGAGGATAGTTGTTCGGGGTAGTCATCTTCTTCGGCTTTTCCCATCCAATCTTACAGCTTTGTTTTGTGATTTGCTCCAAAAGGCGAGTTTCATAATGTTCTTCGCTAACAATCCAAAGTTGGACCATAGAGCTTTTGAGATGATGCTACAGATTACTGAAGTGCATTTTCTCTTGGTAAACTATTATCACCACTTCTCAGAAACAGCCCAGTTCCTTCCTGTATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

24.85

Weight (kDa)

8.9

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 15
AciI CCGC 7 cut(s) 15, 96, 195, 340, 378, 410, 413
AclWI GGATC 2 cut(s) 16, 129
AcoI YGGCCR 1 cut(s) 390
AcuI CTGAAG 1 cut(s) 600
AgsI TTSAA 1 cut(s) 266
AjnI CCWGG 1 cut(s) 38
AjuI GAANNNNNNNTTGG 2 cut(s) 258, 290
AluBI AGCT 2 cut(s) 479, 554
AluI AGCT 2 cut(s) 479, 554
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 2 cut(s) 16, 129
Ama87I CYCGRG 1 cut(s) 237
AoxI GGCC 1 cut(s) 390
ApeKI GCWGC 2 cut(s) 192, 375
AspS9I GGNCC 2 cut(s) 35, 544
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 3 cut(s) 266, 304, 602
AvaI CYCGRG 1 cut(s) 237
AvaII GGWCC 2 cut(s) 35, 544
BalI TGGCCA 1 cut(s) 392
BanII GRGCYC 1 cut(s) 238
BbvI GCAGC 2 cut(s) 204, 387
BciT130I CCWGG 1 cut(s) 40
BclI TGATCA 1 cut(s) 294
BcnI CCSGG 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 218
BfmI CTRYAG 1 cut(s) 569
BglII AGATCT 1 cut(s) 241
BisI GCNGC 3 cut(s) 193, 376, 411
BlsI GCNGC 3 cut(s) 194, 377, 412
Bme1390I CCNGG 2 cut(s) 40, 119
Bme18I GGWCC 2 cut(s) 35, 544
BmeT110I CYCGRG 1 cut(s) 237
BmgT120I GGNCC 2 cut(s) 35, 544
BmiI GGNNCC 3 cut(s) 36, 37, 113
BmrFI CCNGG 2 cut(s) 40, 119
BmrI ACTGGG 3 cut(s) 40, 260, 625
BmsI GCATC 2 cut(s) 324, 555
BmuI ACTGGG 3 cut(s) 40, 260, 625
BpuMI CCSGG 1 cut(s) 119
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 38
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 215, 245
Bse1I ACTGG 3 cut(s) 35, 255, 631
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 3 cut(s) 293, 387, 464
BseMII CTCAG 1 cut(s) 633
BseNI ACTGG 3 cut(s) 35, 255, 631
BseXI GCAGC 2 cut(s) 204, 387
BseYI CCCAGC 1 cut(s) 306
BshFI GGCC 1 cut(s) 392
BsiHKCI CYCGRG 1 cut(s) 237
BsiSI CCGG 1 cut(s) 118
BslFI GGGAC 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 48
BsnI GGCC 1 cut(s) 392
Bso31I GGTCTC 1 cut(s) 218
BsoBI CYCGRG 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 4 cut(s) 8, 121, 241, 294
BspACI CCGC 7 cut(s) 15, 96, 195, 340, 378, 410, 413
BspANI GGCC 1 cut(s) 392
BspCNI CTCAG 1 cut(s) 632
BspLI GGNNCC 3 cut(s) 36, 37, 113
BspPI GGATC 2 cut(s) 16, 129
BspTNI GGTCTC 1 cut(s) 218
BsrBI CCGCTC 1 cut(s) 15
BsrI ACTGG 3 cut(s) 35, 255, 631
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 4 cut(s) 8, 121, 241, 294
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 328
BstDEI CTNAG 1 cut(s) 619
BstF5I GGATG 3 cut(s) 293, 387, 464
BstKTI GATC 4 cut(s) 11, 124, 244, 297
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 4 cut(s) 8, 121, 241, 294
BstMWI GCNNNNNNNGC 2 cut(s) 312, 375
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 2 cut(s) 38, 117
BstSFI CTRYAG 1 cut(s) 569
BstV1I GCAGC 2 cut(s) 204, 387
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 1 cut(s) 392
BtgZI GCGATG 1 cut(s) 229
BtsCI GGATG 3 cut(s) 293, 387, 464
Cfr13I GGNCC 2 cut(s) 35, 544
CviAII CATG 1 cut(s) 105
DdeI CTNAG 1 cut(s) 619
DpnI GATC 4 cut(s) 10, 123, 243, 296
DpnII GATC 4 cut(s) 8, 121, 241, 294
EaeI YGGCCR 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Eco24I GRGCYC 1 cut(s) 238
Eco31I GGTCTC 1 cut(s) 218
Eco47I GGWCC 2 cut(s) 35, 544
Eco57I CTGAAG 1 cut(s) 600
Eco88I CYCGRG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 38
EcoT38I GRGCYC 1 cut(s) 238
FaeI CATG 1 cut(s) 108
FaiI YATR 6 cut(s) 106, 181, 190, 328, 515, 549
FaqI GGGAC 1 cut(s) 48
FatI CATG 1 cut(s) 104
FauI CCCGC 2 cut(s) 8, 371
FbaI TGATCA 1 cut(s) 294
Fnu4HI GCNGC 3 cut(s) 193, 376, 411
FokI GGATG 3 cut(s) 300, 394, 451
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 3 cut(s) 193, 376, 411
GluI GCNGC 3 cut(s) 193, 376, 411
GsaI CCCAGC 1 cut(s) 310
HaeIII GGCC 1 cut(s) 392
HapII CCGG 1 cut(s) 118
Hin1II CATG 1 cut(s) 108
HincII GTYRAC 2 cut(s) 165, 358
HindII GTYRAC 2 cut(s) 165, 358
HpaI GTTAAC 1 cut(s) 358
HpaII CCGG 1 cut(s) 118
HphI GGTGA 3 cut(s) 266, 304, 602
Hpy166II GTNNAC 3 cut(s) 165, 358, 601
Hpy188I TCNGA 3 cut(s) 27, 246, 622
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 3 cut(s) 165, 358, 601
HpyAV CCTTC 1 cut(s) 647
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 5 cut(s) 47, 66, 192, 375, 586
HpyF10VI GCNNNNNNNGC 2 cut(s) 312, 375
HpyF3I CTNAG 1 cut(s) 619
Hsp92II CATG 1 cut(s) 108
KflI GGGWCCC 1 cut(s) 35
Ksp22I TGATCA 1 cut(s) 294
KspAI GTTAAC 1 cut(s) 358
Kzo9I GATC 4 cut(s) 8, 121, 241, 294
LmnI GCTCC 2 cut(s) 137, 501
LpnPI CCDG 9 cut(s) 16, 25, 52, 56, 131, 134, 236, 292, 644
Lsp1109I GCAGC 2 cut(s) 204, 387
LweI GCATC 2 cut(s) 324, 555
MalI GATC 4 cut(s) 10, 123, 243, 296
MbiI CCGCTC 1 cut(s) 15
MboI GATC 4 cut(s) 8, 121, 241, 294
MboII GAAGA 6 cut(s) 143, 219, 345, 440, 443, 514
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 238
MlsI TGGCCA 1 cut(s) 392
MluCI AATT 1 cut(s) 266
MluNI TGGCCA 1 cut(s) 392
MmeI TCCRAC 2 cut(s) 201, 522
MnlI CCTC 5 cut(s) 125, 177, 329, 400, 417
Mox20I TGGCCA 1 cut(s) 392
MscI TGGCCA 1 cut(s) 392
MseI TTAA 1 cut(s) 357
Msp20I TGGCCA 1 cut(s) 392
MspA1I CMGCKG 2 cut(s) 195, 378
MspI CCGG 1 cut(s) 118
MspR9I CCNGG 2 cut(s) 40, 119
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 2 cut(s) 312, 375
NciI CCSGG 1 cut(s) 119
NdeII GATC 4 cut(s) 8, 121, 241, 294
NlaIII CATG 1 cut(s) 108
NlaIV GGNNCC 3 cut(s) 36, 37, 113
PaeR7I CTCGAG 1 cut(s) 237
PfoI TCCNGGA 1 cut(s) 117
PkrI GCNGC 3 cut(s) 194, 377, 412
PpuMI RGGWCCY 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 38
PspFI CCCAGC 1 cut(s) 306
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 3 cut(s) 36, 37, 113
PspPI GGNCC 2 cut(s) 35, 544
PspPPI RGGWCCY 1 cut(s) 35
PsuI RGATCY 1 cut(s) 241
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 3 cut(s) 193, 376, 411
Sau3AI GATC 4 cut(s) 8, 121, 241, 294
Sau96I GGNCC 2 cut(s) 35, 544
ScrFI CCNGG 2 cut(s) 40, 119
SduI GDGCHC 1 cut(s) 238
SetI ASST 5 cut(s) 44, 117, 230, 481, 556
SfaNI GCATC 2 cut(s) 324, 555
SfcI CTRYAG 1 cut(s) 569
Sfr274I CTCGAG 1 cut(s) 237
SinI GGWCC 2 cut(s) 35, 544
SlaI CTCGAG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
Sse9I AATT 1 cut(s) 266
SsiI CCGC 7 cut(s) 15, 96, 195, 340, 378, 410, 413
StyD4I CCNGG 2 cut(s) 38, 117
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 5 cut(s) 11, 88, 173, 238, 331
TasI AATT 1 cut(s) 266
TauI GCSGC 1 cut(s) 413
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TseI GCWGC 2 cut(s) 192, 375
TspDTI ATGAA 1 cut(s) 502
VpaK11BI GGWCC 2 cut(s) 35, 544
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
XhoI CTCGAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.