RchiOBHm_Chr6g0282921

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0014846
Physical Location & Seq
Reverse (-)
46156387 .. 46157646
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25367

Sequence Viewer

Length: 393 bp
ATGGTGAGGAAGATGGAAATGGTTCAACATAGCTTAGTACTTTGTTTTATTAGGTTTTTATGTTTTAGTTTTTGGTTAGTTTTAATAAGTCCCTCCTCCTTTGAGCGAGGGTTTTGGTGGTCTTCCCTATTGGTTGTGCCATTGTTATGGTGTCATCTCCAGGGACTAATTGTTTTAATTTCGATGTTTTCTTGTTGTCAATGTAATGGGGAGATGTCTCTGCACGTATACTGGCGGTATTGGTATATGGGGTGGAAGGGGATTAGTTCTTTCTTGAGGTTGGCTGTAAGGATGTATCGGGACTCTTGGAAAAAGTTGATCGGTTGTAGCCTGGAAGAAAGGGTGATTCATGTGATTAGAGTTGAGCCCCCTATCGGCTCATGGTATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

15.59

Weight (kDa)

9.12

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 228
AciI CCGC 1 cut(s) 235
AfaI GTAC 1 cut(s) 39
AfiI CCNNNNNNNGG 1 cut(s) 374
AgsI TTSAA 1 cut(s) 26
AjnI CCWGG 2 cut(s) 159, 330
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 222
Asp700I GAANNNNTTC 1 cut(s) 21
AsuHPI GGTGA 2 cut(s) 16, 355
BanII GRGCYC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 114
BccI CCATC 1 cut(s) 7
BciT130I CCWGG 2 cut(s) 161, 332
BcoDI GTCTC 1 cut(s) 222
BmcAI AGTACT 1 cut(s) 39
Bme1390I CCNGG 2 cut(s) 161, 332
BmrFI CCNGG 2 cut(s) 161, 332
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 295
BsaAI YACGTR 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 236
BseBI CCWGG 2 cut(s) 161, 332
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 374
BseNI ACTGG 1 cut(s) 236
BseRI GAGGAG 1 cut(s) 85
BsgI GTGCAG 1 cut(s) 206
BslFI GGGAC 3 cut(s) 75, 177, 314
BslI CCNNNNNNNGG 1 cut(s) 374
BsmAI GTCTC 1 cut(s) 222
BsmFI GGGAC 3 cut(s) 75, 177, 314
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 1 cut(s) 318
BspACI CCGC 1 cut(s) 235
BsrI ACTGG 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 1 cut(s) 318
BssNAI GTATAC 1 cut(s) 229
Bst1107I GTATAC 1 cut(s) 229
Bst2UI CCWGG 2 cut(s) 161, 332
BstBAI YACGTR 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 34
BstF5I GGATG 1 cut(s) 297
BstKTI GATC 1 cut(s) 321
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 1 cut(s) 318
BstNI CCWGG 2 cut(s) 161, 332
BstSCI CCNGG 2 cut(s) 159, 330
BstV2I GAAGAC 1 cut(s) 114
BstXI CCANNNNNNTGG 1 cut(s) 147
BstZ17I GTATAC 1 cut(s) 229
BtsCI GGATG 1 cut(s) 297
Csp6I GTAC 1 cut(s) 38
CviAII CATG 2 cut(s) 350, 381
CviJI RGCY 5 cut(s) 33, 284, 330, 367, 378
CviKI_1 RGCY 5 cut(s) 33, 284, 330, 367, 378
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 1 cut(s) 34
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 369
EcoRII CCWGG 2 cut(s) 159, 330
EcoT38I GRGCYC 1 cut(s) 369
FaeI CATG 2 cut(s) 353, 384
FaiI YATR 8 cut(s) 30, 61, 148, 229, 246, 248, 351, 382
FaqI GGGAC 3 cut(s) 75, 177, 314
FatI CATG 2 cut(s) 349, 380
FblI GTMKAC 1 cut(s) 228
FokI GGATG 1 cut(s) 304
FriOI GRGCYC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 143
Hin1II CATG 2 cut(s) 353, 384
HinfI GANTC 2 cut(s) 302, 346
HphI GGTGA 2 cut(s) 16, 355
Hpy166II GTNNAC 1 cut(s) 229
Hpy188III TCNNGA 2 cut(s) 274, 299
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 223
HpyF3I CTNAG 1 cut(s) 34
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 2 cut(s) 353, 384
Kzo9I GATC 1 cut(s) 318
LpnPI CCDG 5 cut(s) 146, 173, 217, 317, 344
MaeII ACGT 1 cut(s) 225
MalI GATC 1 cut(s) 320
MboI GATC 1 cut(s) 318
MboII GAAGA 3 cut(s) 22, 114, 347
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 2 cut(s) 168, 177
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 4 cut(s) 101, 103, 106, 270
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 2 cut(s) 83, 176
MslI CAYNNNNRTG 1 cut(s) 145
MspR9I CCNGG 2 cut(s) 161, 332
MvaI CCWGG 2 cut(s) 161, 332
NdeII GATC 1 cut(s) 318
NlaIII CATG 2 cut(s) 353, 384
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 346
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Ppu21I YACGTR 1 cut(s) 226
Psp6I CCWGG 2 cut(s) 159, 330
PspGI CCWGG 2 cut(s) 159, 330
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 145
SaqAI TTAA 2 cut(s) 83, 176
Sau3AI GATC 1 cut(s) 318
ScaI AGTACT 1 cut(s) 39
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 2 cut(s) 161, 332
SduI GDGCHC 1 cut(s) 369
SetI ASST 4 cut(s) 35, 56, 228, 281
SmiMI CAYNNNNRTG 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
Sse9I AATT 2 cut(s) 168, 177
SsiI CCGC 1 cut(s) 235
StyD4I CCNGG 2 cut(s) 159, 330
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 182
TasI AATT 2 cut(s) 168, 177
TatI WGTACW 1 cut(s) 37
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 2 cut(s) 83, 176
Tru9I TTAA 2 cut(s) 83, 176
TspDTI ATGAA 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 228
XmnI GAANNNNTTC 1 cut(s) 21
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.