Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007286.1

Orthogroup ID

OG0014846

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2503

Gene Structure 2503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007286.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 412 bp

atgcccctacatgtatactggcggttttggtatacggtgttggaaggggttagtctcttcttgaggttggctgtaaggaggtatcgggactccttggataggttgattctttgtagcctgaagagtgggcgattcatgtggttagagtttagtctctatcggctcatggtgtctgtaactgttggtcttacattagggaaagcactaaagtccatggatccttcagtcatgcaaaaccctgagctggccagcatcataaatcaagagcagcaaagggcgatggtcaatgagatggtgggaaagcttacgagtgcatgctgggacaagtgcatcacctctgcacctgggagcaagttcagttccagtgaaacagcttgcctctcaaattgtgcccggcgctatttggatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

137

Amino Acids

15.72

Weight (kDa)

9.27

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014846)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0116941 RchiOBHm_Chr5g0032611 RchiOBHm_Chr5g0046641 RchiOBHm_Chr6g0282921
rosa_multiflora	Rmu_sc0007286.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101500
rosa_rugosa	Rorug01G0349400 Rorug02G0010600 Rorug02G0619200 Rorug04G0094800 Rorug05G0122900 Rorug07G0205600
rosa_samantha	Rh3CG287400 Rh3DG279100 Rh3DG283200 Rh5AG051900 Rh7BG387700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	15, 32
AciI	CCGC	1 cut(s)	22
AclWI	GGATC	2 cut(s)	212, 225
AcoI	YGGCCR	1 cut(s)	246
AcuI	CTGAAG	2 cut(s)	140, 207
AfiI	CCNNNNNNNGG	2 cut(s)	99, 244
AflIII	ACRYGT	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	3 cut(s)	244, 304, 374
AluI	AGCT	3 cut(s)	244, 304, 374
Alw26I	GTCTC	2 cut(s)	59, 158
AlwI	GGATC	2 cut(s)	212, 225
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	268
AspLEI	GCGC	1 cut(s)	399
AsuC2I	CCSGG	1 cut(s)	394
AsuHPI	GGTGA	1 cut(s)	325
BaeGI	GKGCMC	1 cut(s)	394
BalI	TGGCCA	1 cut(s)	248
BamHI	GGATCC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	2 cut(s)	274, 286
BciT130I	CCWGG	1 cut(s)	345
BcnI	CCSGG	1 cut(s)	394
BcoDI	GTCTC	2 cut(s)	59, 158
BfoI	RGCGCY	1 cut(s)	400
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	2 cut(s)	345, 394
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	2 cut(s)	345, 394
BmsI	GCATC	2 cut(s)	261, 339
Bpu10I	CCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	82
BpuMI	CCSGG	1 cut(s)	394
BsaJI	CCNNGG	3 cut(s)	93, 213, 344
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 244
Bse1I	ACTGG	2 cut(s)	23, 363
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	3 cut(s)	93, 213, 344
BseLI	CCNNNNNNNGG	2 cut(s)	99, 244
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	23, 363
BseSI	GKGCMC	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	280
BseYI	CCCAGC	1 cut(s)	318
BsgI	GTGCAG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	394
BslFI	GGGAC	2 cut(s)	101, 335
BslI	CCNNNNNNNGG	2 cut(s)	99, 244
BsmAI	GTCTC	2 cut(s)	59, 158
BsmFI	GGGAC	2 cut(s)	101, 335
BsnI	GGCC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp143I	GATC	1 cut(s)	217
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	2 cut(s)	212, 225
BsrI	ACTGG	2 cut(s)	23, 363
BssECI	CCNNGG	3 cut(s)	93, 213, 344
BssMI	GATC	1 cut(s)	217
BssNAI	GTATAC	2 cut(s)	16, 33
BssT1I	CCWWGG	2 cut(s)	93, 213
Bst1107I	GTATAC	2 cut(s)	16, 33
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	37, 181
Bst6I	CTCTTC	2 cut(s)	62, 116
BstC8I	GCNNGC	4 cut(s)	246, 250, 316, 376
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	213
BstENI	CCTNNNNNAGG	1 cut(s)	97
BstH2I	RGCGCY	1 cut(s)	400
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	2 cut(s)	59, 158
BstMBI	GATC	1 cut(s)	217
BstNI	CCWGG	1 cut(s)	345
BstNSI	RCATGY	2 cut(s)	14, 318
BstSCI	CCNGG	2 cut(s)	343, 392
BstSLI	GKGCMC	1 cut(s)	394
BstV1I	GCAGC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BstZ17I	GTATAC	2 cut(s)	16, 33
BsuRI	GGCC	1 cut(s)	248
BtgI	CCRYGG	1 cut(s)	213
BtgZI	GCGATG	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	370
Cac8I	GCNNGC	4 cut(s)	246, 250, 316, 376
CfoI	GCGC	1 cut(s)	399
CviAII	CATG	6 cut(s)	11, 136, 166, 214, 229, 315
CviJI	RGCY	7 cut(s)	71, 117, 163, 244, 248, 304, 374
CviKI_1	RGCY	7 cut(s)	71, 117, 163, 244, 248, 304, 374
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	62, 116
EarI	CTCTTC	2 cut(s)	62, 116
Eco130I	CCWWGG	2 cut(s)	93, 213
Eco57I	CTGAAG	2 cut(s)	140, 207
EcoNI	CCTNNNNNAGG	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	2 cut(s)	93, 213
ErhI	CCWWGG	2 cut(s)	93, 213
FaeI	CATG	6 cut(s)	14, 139, 169, 217, 232, 318
FaqI	GGGAC	2 cut(s)	101, 335
FatI	CATG	6 cut(s)	10, 135, 165, 213, 228, 314
FblI	GTMKAC	2 cut(s)	15, 32
Fnu4HI	GCNGC	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	269
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	1 cut(s)	269
GsaI	CCCAGC	1 cut(s)	322
HaeII	RGCGCY	1 cut(s)	400
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	1 cut(s)	394
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	6 cut(s)	14, 139, 169, 217, 232, 318
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	3 cut(s)	89, 106, 132
HpaII	CCGG	1 cut(s)	394
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	2 cut(s)	16, 33
Hpy188III	TCNNGA	3 cut(s)	61, 86, 263
Hpy8I	GTNNAC	2 cut(s)	16, 33
HpyAV	CCTTC	2 cut(s)	38, 231
HpyCH4III	ACNGT	2 cut(s)	37, 181
HpyCH4V	TGCA	4 cut(s)	232, 314, 330, 341
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	6 cut(s)	14, 139, 169, 217, 232, 318
HspAI	GCGC	1 cut(s)	397
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	348
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	2 cut(s)	261, 339
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	2 cut(s)	49, 133
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	394
MlsI	TGGCCA	1 cut(s)	248
MluCI	AATT	1 cut(s)	385
MluNI	TGGCCA	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	21
MnlI	CCTC	4 cut(s)	57, 72, 346, 389
Mox20I	TGGCCA	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	248
Msp20I	TGGCCA	1 cut(s)	248
MspI	CCGG	1 cut(s)	394
MspR9I	CCNGG	2 cut(s)	345, 394
MvaI	CCWGG	1 cut(s)	345
NciI	CCSGG	1 cut(s)	394
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	6 cut(s)	14, 139, 169, 217, 232, 318
NlaIV	GGNNCC	1 cut(s)	219
NspI	RCATGY	2 cut(s)	14, 318
PaeI	GCATGC	1 cut(s)	318
PciI	ACATGT	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	106, 132
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PscI	ACATGT	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	343
PspFI	CCCAGC	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	217
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	345, 394
SduI	GDGCHC	1 cut(s)	394
SetI	ASST	8 cut(s)	68, 83, 104, 246, 306, 338, 346, 376
SfaNI	GCATC	2 cut(s)	261, 339
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
SphI	GCATGC	1 cut(s)	318
Sse9I	AATT	1 cut(s)	385
SsiI	CCGC	1 cut(s)	22
StyD4I	CCNGG	2 cut(s)	343, 392
StyI	CCWWGG	2 cut(s)	93, 213
TaaI	ACNGT	2 cut(s)	37, 181
TasI	AATT	1 cut(s)	385
TfiI	GAWTC	2 cut(s)	106, 132
TscAI	CASTG	1 cut(s)	370
TseI	GCWGC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	124
TspRI	CASTG	1 cut(s)	370
XagI	CCTNNNNNAGG	1 cut(s)	97
XceI	RCATGY	2 cut(s)	14, 318
XmiI	GTMKAC	2 cut(s)	15, 32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.