Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017790

Physical Location & Seq

Genomic Coordinates Reverse (-)

51387833 .. 51389237

Gene Structure 1405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50535

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGTCTATTACACGTGTATTTGACATAAGAGCATCCTCTGTCAAATTTGACAGATTCTCCCCTTTCGGTCTTTTATTTTTTTATTGTTTCTCGCTCTCGCTCTTACTCTCTCTCTATCTCTTTCCCTTTCGCGTCTTTCTTCCTTTGCTCACACCCAAAACTTCAAGCTTCCTCTCTTCCAGGGGCGGATCCAGCCACGGGCCAGGTAGGGCTCAAGCCCCACCGGGAAAAGGGGAACACTCTTTTCCTCTCTCAAGCGCTGTTCCTTCACTTCTTCTCCTCCTCTCCGTCTCCGAGCTCCAGCCTCCAGTTCTTCCGTTTTTCGGCGGCTTGCGGCTCAGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

12.55

Weight (kDa)

10.51

Isoelectric Point (pI)

62.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017790)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0134311 RchiOBHm_Chr5g0064851 RchiOBHm_Chr7g0217491
rosa_multiflora	Rmu_sc0000368.1_g000029
rosa_roxburghii	Rroxscaffold_2G00108920 Rroxscaffold_4G00278930 Rroxscaffold_5G00368450 Rroxscaffold_6G00389850
rosa_rugosa	Rorug03G0029500
rosa_samantha	Rh3DG316600 Rh3DG316800
rosa_wichuraiana	Rw3G025100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	132
AciI	CCGC	3 cut(s)	186, 327, 334
AclWI	GGATC	2 cut(s)	183, 196
AcsI	RAATTY	1 cut(s)	44
AcvI	CACGTG	1 cut(s)	14
AfeI	AGCGCT	1 cut(s)	259
AfiI	CCNNNNNNNGG	3 cut(s)	198, 230, 323
AflIII	ACRYGT	2 cut(s)	11, 13
AgsI	TTSAA	1 cut(s)	165
AjnI	CCWGG	2 cut(s)	179, 202
AluBI	AGCT	2 cut(s)	168, 298
AluI	AGCT	2 cut(s)	168, 298
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	2 cut(s)	183, 196
Aor51HI	AGCGCT	1 cut(s)	259
AoxI	GGCC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	200
AsuC2I	CCSGG	1 cut(s)	225
BamHI	GGATCC	1 cut(s)	188
BanII	GRGCYC	2 cut(s)	214, 300
BbrPI	CACGTG	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	300
BciT130I	CCWGG	2 cut(s)	181, 204
BcnI	CCSGG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	295
BfoI	RGCGCY	1 cut(s)	261
BisI	GCNGC	2 cut(s)	328, 335
BlpI	GCTNAGC	1 cut(s)	338
BlsI	GCNGC	2 cut(s)	329, 336
Bme1390I	CCNGG	3 cut(s)	181, 204, 225
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	3 cut(s)	181, 204, 225
BmsI	GCATC	1 cut(s)	41
BpmI	CTGGAG	2 cut(s)	284, 291
Bpu1102I	GCTNAGC	1 cut(s)	338
BpuEI	CTTGAG	2 cut(s)	198, 238
BpuMI	CCSGG	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	180, 196
BsaXI	ACNNNNNCTCC	4 cut(s)	41, 71, 261, 291
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 230, 323
Bse1I	ACTGG	1 cut(s)	308
BseBI	CCWGG	2 cut(s)	181, 204
BseDI	CCNNGG	2 cut(s)	180, 196
BseGI	GGATG	1 cut(s)	32
BseLI	CCNNNNNNNGG	3 cut(s)	198, 230, 323
BseNI	ACTGG	1 cut(s)	308
BseRI	GAGGAG	2 cut(s)	269, 272
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	224
BslI	CCNNNNNNNGG	3 cut(s)	198, 230, 323
BsmAI	GTCTC	1 cut(s)	295
BsmBI	CGTCTC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	202
Bsp1286I	GDGCHC	2 cut(s)	214, 300
Bsp143I	GATC	1 cut(s)	188
Bsp1720I	GCTNAGC	1 cut(s)	338
BspACI	CCGC	3 cut(s)	186, 327, 334
BspANI	GGCC	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	2 cut(s)	183, 196
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	180, 196
BssMI	GATC	1 cut(s)	188
Bst2UI	CCWGG	2 cut(s)	181, 204
Bst6I	CTCTTC	1 cut(s)	181
BstBAI	YACGTR	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	338
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	32
BstFNI	CGCG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	1 cut(s)	191
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	188
BstMWI	GCNNNNNNNGC	1 cut(s)	192
BstNI	CCWGG	2 cut(s)	181, 204
BstSCI	CCNGG	3 cut(s)	179, 202, 223
BstUI	CGCG	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	202
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	332
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	200
CseI	GACGC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	1 cut(s)	190
DpnII	GATC	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
EciI	GGCGGA	1 cut(s)	201
Ecl136II	GAGCTC	1 cut(s)	298
Eco24I	GRGCYC	2 cut(s)	214, 300
Eco47III	AGCGCT	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	298
Eco72I	CACGTG	1 cut(s)	14
EcoICRI	GAGCTC	1 cut(s)	298
EcoRII	CCWGG	2 cut(s)	179, 202
EcoT38I	GRGCYC	2 cut(s)	214, 300
Esp3I	CGTCTC	1 cut(s)	295
FaiI	YATR	1 cut(s)	26
Fnu4HI	GCNGC	2 cut(s)	328, 335
FokI	GGATG	1 cut(s)	19
FriOI	GRGCYC	2 cut(s)	214, 300
Fsp4HI	GCNGC	2 cut(s)	328, 335
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	2 cut(s)	328, 335
GsuI	CTGGAG	2 cut(s)	284, 291
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	202
HapII	CCGG	1 cut(s)	224
HgaI	GACGC	1 cut(s)	121
HhaI	GCGC	1 cut(s)	260
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HindIII	AAGCTT	1 cut(s)	166
HinfI	GANTC	1 cut(s)	54
HpaII	CCGG	1 cut(s)	224
Hpy188I	TCNGA	1 cut(s)	295
HpyAV	CCTTC	1 cut(s)	276
HpyCH4IV	ACGT	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	1 cut(s)	192
HpyF3I	CTNAG	1 cut(s)	338
HpySE526I	ACGT	1 cut(s)	13
HspAI	GCGC	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	188
LmnI	GCTCC	1 cut(s)	303
LpnPI	CCDG	8 cut(s)	166, 189, 193, 205, 216, 237, 314, 321
LweI	GCATC	1 cut(s)	41
MaeII	ACGT	1 cut(s)	13
MalI	GATC	1 cut(s)	190
MboI	GATC	1 cut(s)	188
MboII	GAAGA	4 cut(s)	131, 168, 266, 305
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	2 cut(s)	214, 300
MluCI	AATT	1 cut(s)	44
MnlI	CCTC	6 cut(s)	46, 182, 258, 290, 293, 315
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	3 cut(s)	181, 204, 225
MvaI	CCWGG	2 cut(s)	181, 204
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	192
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	1 cut(s)	188
NlaIV	GGNNCC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	54
PkrI	GCNGC	2 cut(s)	329, 336
PmaCI	CACGTG	1 cut(s)	14
PmlI	CACGTG	1 cut(s)	14
Ppu21I	YACGTR	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	300
Psp6I	CCWGG	2 cut(s)	179, 202
PspCI	CACGTG	1 cut(s)	14
PspGI	CCWGG	2 cut(s)	179, 202
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	188
SacI	GAGCTC	1 cut(s)	300
SatI	GCNGC	2 cut(s)	328, 335
Sau3AI	GATC	1 cut(s)	188
Sau96I	GGNCC	1 cut(s)	200
ScrFI	CCNGG	3 cut(s)	181, 204, 225
SduI	GDGCHC	2 cut(s)	214, 300
SetI	ASST	4 cut(s)	16, 170, 208, 300
SfaNI	GCATC	1 cut(s)	41
SmlI	CTYRAG	2 cut(s)	213, 253
SmoI	CTYRAG	2 cut(s)	213, 253
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	3 cut(s)	186, 327, 334
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	3 cut(s)	179, 202, 223
TaiI	ACGT	1 cut(s)	16
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	1 cut(s)	44
TauI	GCSGC	2 cut(s)	330, 337
TfiI	GAWTC	1 cut(s)	54
TspGWI	ACGGA	2 cut(s)	277, 306
XapI	RAATTY	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.