Rroxscaffold_2G00108920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017790
Physical Location & Seq
Forward (+)
33014973 .. 33016878
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00108920.1

Sequence Viewer

Length: 420 bp
ATGAGTTTTCTCAAGGATTTGGCTCTAAAGGAGGCTTTTTTCGCACTTGGAGCAAGAGATTTCCTCACTTGGAGAGTTGAAATCGGATTTGCAGCAAAGGATTTAAGGTATGAATTTGATTTCATCGATCTTGCTGGCTTACGCCTTACGCCTCAAGGCAAACGCCTTCTTCGAGGCTCTCCCGAAAACGCCTCGGCTACGCCTCAGCCTTTTAAAACATTGCGCACAAGGAACTTTATTACAAAGGATTTGCGGCCAATAGCGATACACCAAACTGTTACTCTATACAAATGCGACACAATGAAAATATGCCTTAATACAAATGCGATACACGCCCTAGCACACGAGTGCGATACACGCCTTCTAGCCAAGTCCGATTCTTTGGAATATGAGGAGCTCGGAAGAAGATCACCGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.86

Weight (kDa)

9.1

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 224
AciI CCGC 1 cut(s) 253
AcoI YGGCCR 1 cut(s) 254
AcsI RAATTY 1 cut(s) 113
AgsI TTSAA 1 cut(s) 80
AleI CACNNNNGTG 1 cut(s) 346
AluBI AGCT 1 cut(s) 397
AluI AGCT 1 cut(s) 397
Alw21I GWGCWC 1 cut(s) 399
AoxI GGCC 1 cut(s) 254
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 113
AspLEI GCGC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 402
BanII GRGCYC 1 cut(s) 399
BauI CACGAG 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 399
BbvCI CCTCAGC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 104
BfaI CTAG 2 cut(s) 338, 365
BisI GCNGC 2 cut(s) 93, 254
BlsI GCNGC 2 cut(s) 94, 255
BplI GAGNNNNNCTC 2 cut(s) 48, 80
Bpu10I CCTNAGC 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 138
Bsa29I ATCGAT 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 192
Bse3DI GCAATG 1 cut(s) 218
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 192
BseMI GCAATG 1 cut(s) 218
BseMII CTCAG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 407
BseXI GCAGC 1 cut(s) 104
BshFI GGCC 1 cut(s) 256
BshVI ATCGAT 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 399
BsnI GGCC 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 399
Bsp143I GATC 2 cut(s) 127, 407
BspACI CCGC 1 cut(s) 253
BspANI GGCC 1 cut(s) 256
BspCNI CTCAG 1 cut(s) 217
BspDI ATCGAT 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 2 cut(s) 127, 407
BssSI CACGAG 1 cut(s) 344
Bst2BI CACGAG 1 cut(s) 344
Bst4CI ACNGT 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 204
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 2 cut(s) 130, 410
BstMBI GATC 2 cut(s) 127, 407
BstMWI GCNNNNNNNGC 4 cut(s) 41, 50, 332, 357
BstV1I GCAGC 1 cut(s) 104
Bsu15I ATCGAT 1 cut(s) 126
BsuRI GGCC 1 cut(s) 256
BsuTUI ATCGAT 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 136
CfoI GCGC 1 cut(s) 225
ClaI ATCGAT 1 cut(s) 126
CviJI RGCY 9 cut(s) 23, 35, 138, 177, 197, 208, 256, 368, 397
CviKI_1 RGCY 9 cut(s) 23, 35, 138, 177, 197, 208, 256, 368, 397
DdeI CTNAG 1 cut(s) 204
DpnI GATC 2 cut(s) 129, 409
DpnII GATC 2 cut(s) 127, 407
DraI TTTAAA 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 254
Ecl136II GAGCTC 1 cut(s) 397
Eco24I GRGCYC 1 cut(s) 399
Eco53kI GAGCTC 1 cut(s) 397
EcoICRI GAGCTC 1 cut(s) 397
EcoT38I GRGCYC 1 cut(s) 399
FaiI YATR 4 cut(s) 111, 286, 310, 390
Fnu4HI GCNGC 2 cut(s) 93, 254
FriOI GRGCYC 1 cut(s) 399
Fsp4HI GCNGC 2 cut(s) 93, 254
FspBI CTAG 2 cut(s) 338, 365
FspI TGCGCA 1 cut(s) 224
GlaI GCGC 1 cut(s) 224
GluI GCNGC 2 cut(s) 93, 254
HaeIII GGCC 1 cut(s) 256
HhaI GCGC 1 cut(s) 225
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HinfI GANTC 1 cut(s) 377
HphI GGTGA 1 cut(s) 402
Hpy188I TCNGA 3 cut(s) 86, 376, 401
Hpy188III TCNNGA 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 176, 371
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 50, 332, 357
HpyF3I CTNAG 1 cut(s) 204
HspAI GCGC 1 cut(s) 223
Kzo9I GATC 2 cut(s) 127, 407
LmnI GCTCC 2 cut(s) 50, 394
LpnPI CCDG 1 cut(s) 120
Lsp1109I GCAGC 1 cut(s) 104
MaeI CTAG 2 cut(s) 338, 365
MaeIII GTNAC 1 cut(s) 277
MalI GATC 2 cut(s) 129, 409
MboI GATC 2 cut(s) 127, 407
MboII GAAGA 3 cut(s) 161, 414, 417
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 2 cut(s) 113, 415
MnlI CCTC 7 cut(s) 25, 74, 162, 167, 202, 213, 385
MseI TTAA 3 cut(s) 104, 213, 315
MslI CAYNNNNRTG 1 cut(s) 346
MwoI GCNNNNNNNGC 4 cut(s) 41, 50, 332, 357
NdeII GATC 2 cut(s) 127, 407
NmeAIII GCCGAG 1 cut(s) 173
NsbI TGCGCA 1 cut(s) 224
OliI CACNNNNGTG 1 cut(s) 346
PcsI WCGNNNNNNNCGW 1 cut(s) 169
PfeI GAWTC 1 cut(s) 377
PkrI GCNGC 2 cut(s) 94, 255
Psp124BI GAGCTC 1 cut(s) 399
RseI CAYNNNNRTG 1 cut(s) 346
SacI GAGCTC 1 cut(s) 399
SaqAI TTAA 3 cut(s) 104, 213, 315
SatI GCNGC 2 cut(s) 93, 254
Sau3AI GATC 2 cut(s) 127, 407
SduI GDGCHC 1 cut(s) 399
SetI ASST 2 cut(s) 110, 399
SmiMI CAYNNNNRTG 1 cut(s) 346
SmlI CTYRAG 2 cut(s) 11, 153
SmoI CTYRAG 2 cut(s) 11, 153
Sse9I AATT 2 cut(s) 113, 415
SsiI CCGC 1 cut(s) 253
SspMI CTAG 2 cut(s) 338, 365
SstI GAGCTC 1 cut(s) 399
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 2 cut(s) 126, 172
TasI AATT 2 cut(s) 113, 415
TauI GCSGC 1 cut(s) 256
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 3 cut(s) 104, 213, 315
Tru9I TTAA 3 cut(s) 104, 213, 315
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 3 cut(s) 112, 126, 317
XapI RAATTY 1 cut(s) 113
XspI CTAG 2 cut(s) 338, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.