Rroxscaffold_5G00368450

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
50231113 .. 50232176
1064 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00368450.1

Sequence Viewer

Length: 465 bp
ATGTGGTATTGGCAATTGGAAGAAGATTTGCATGACATTTCGGGGCCGTTGAGTTTTCGAACAACATATAGCCGAAAATGGTGGCATGAGTCGATAAATCCTATCGGGTTTGGTCGAGTGGAGCTATATATGAACTTTTCATACTTGACAAGAGTATTGACCTTAATCAAGCTCAAACTAAACCATCTCCAACAGATTGGTCTTTTGCCACCCGACATTCCAACGAATACTTTTGAAGGTCCAAATTGTTCTCCAACGGATATGCCTTATCCACGTGGATTTGACATTAGCCTCTCCTCTGTCAAATTTGACAGTGTCTTCTCCTTCTGTCTTTTATTTTTTTATTGTTTCTCGGTGCATCTCTCTCCTTCATTGTCGCTTCTTTCTTCCTTCATCTCACCCGAACCGATTTCAGCCTACACACTTCCAAAACGCAGCAAATTCGACCCTAACCCAGAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.88

Weight (kDa)

6.4

Isoelectric Point (pI)

51.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 305, 440
AcvI CACGTG 1 cut(s) 275
AgsI TTSAA 1 cut(s) 236
AluBI AGCT 2 cut(s) 124, 172
AluI AGCT 2 cut(s) 124, 172
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 435
ApoI RAATTY 2 cut(s) 305, 440
AspS9I GGNCC 2 cut(s) 44, 239
AsuHPI GGTGA 1 cut(s) 390
AsuII TTCGAA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 239
BbrPI CACGTG 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 310
BbvI GCAGC 1 cut(s) 447
BccI CCATC 1 cut(s) 192
BceAI ACGGC 1 cut(s) 31
BcgI CGANNNNNNTGC 2 cut(s) 424, 458
BisI GCNGC 1 cut(s) 436
BlsI GCNGC 1 cut(s) 437
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 2 cut(s) 44, 239
BmiI GGNNCC 1 cut(s) 45
BmsI GCATC 1 cut(s) 367
BpiI GAAGAC 1 cut(s) 310
Bpu14I TTCGAA 1 cut(s) 58
BsaAI YACGTR 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 286
BseXI GCAGC 1 cut(s) 447
BshFI GGCC 1 cut(s) 46
BsnI GGCC 1 cut(s) 46
Bsp119I TTCGAA 1 cut(s) 58
BspANI GGCC 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 45
BspT104I TTCGAA 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 314
BstBAI YACGTR 1 cut(s) 275
BstBI TTCGAA 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 447
BstV2I GAAGAC 1 cut(s) 310
BstXI CCANNNNNNTGG 1 cut(s) 197
BsuRI GGCC 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 44, 239
CviAII CATG 2 cut(s) 32, 86
CviJI RGCY 6 cut(s) 46, 72, 124, 172, 291, 416
CviKI_1 RGCY 6 cut(s) 46, 72, 124, 172, 291, 416
Eco47I GGWCC 1 cut(s) 239
Eco72I CACGTG 1 cut(s) 275
FaeI CATG 2 cut(s) 35, 89
FaiI YATR 9 cut(s) 33, 67, 69, 87, 127, 129, 131, 142, 263
FatI CATG 2 cut(s) 31, 85
Fnu4HI GCNGC 1 cut(s) 436
Fsp4HI GCNGC 1 cut(s) 436
GluI GCNGC 1 cut(s) 436
HaeIII GGCC 1 cut(s) 46
Hin1II CATG 2 cut(s) 35, 89
HinfI GANTC 1 cut(s) 89
HphI GGTGA 1 cut(s) 390
HpyAV CCTTC 4 cut(s) 230, 334, 378, 400
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 2 cut(s) 31, 358
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 2 cut(s) 35, 89
LmnI GCTCC 1 cut(s) 121
Lsp1109I GCAGC 1 cut(s) 447
LweI GCATC 1 cut(s) 367
MaeII ACGT 1 cut(s) 274
MboII GAAGA 4 cut(s) 32, 35, 310, 378
MfeI CAATTG 1 cut(s) 14
MluCI AATT 4 cut(s) 14, 244, 305, 440
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 3 cut(s) 214, 245, 278
MnlI CCTC 2 cut(s) 302, 307
MseI TTAA 1 cut(s) 164
MunI CAATTG 1 cut(s) 14
NlaIII CATG 2 cut(s) 35, 89
NlaIV GGNNCC 1 cut(s) 45
NspV TTCGAA 1 cut(s) 58
PflFI GACNNNGTC 1 cut(s) 314
PkrI GCNGC 1 cut(s) 437
PleI GAGTC 1 cut(s) 97
PmaCI CACGTG 1 cut(s) 275
PmlI CACGTG 1 cut(s) 275
PpsI GAGTC 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 275
PspCI CACGTG 1 cut(s) 275
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 2 cut(s) 44, 239
PsrI GAACNNNNNNTAC 2 cut(s) 125, 157
PsyI GACNNNGTC 1 cut(s) 314
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 1 cut(s) 436
Sau96I GGNCC 2 cut(s) 44, 239
SchI GAGTC 1 cut(s) 98
SetI ASST 5 cut(s) 126, 164, 174, 241, 277
SfaNI GCATC 1 cut(s) 367
SfuI TTCGAA 1 cut(s) 58
SinI GGWCC 1 cut(s) 239
Sse9I AATT 4 cut(s) 14, 244, 305, 440
TaaI ACNGT 1 cut(s) 314
TaiI ACGT 1 cut(s) 277
TaqI TCGA 4 cut(s) 58, 92, 115, 444
TasI AATT 4 cut(s) 14, 244, 305, 440
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TscAI CASTG 1 cut(s) 319
TseI GCWGC 1 cut(s) 435
TspDTI ATGAA 4 cut(s) 129, 146, 360, 382
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 1 cut(s) 319
Tth111I GACNNNGTC 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 2 cut(s) 305, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.