Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0017790

Physical Location & Seq

Genomic Coordinates Reverse (-)

34056774 .. 34057605

Gene Structure 832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG316600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGAGTGGTCGCTTTGTTGTCTGGCCAACCAAAAGAAGGTGTCTTGATCGAGGCCAGATCAGAATCAAAAGGCTTCTACGAGGAAAGAGTGACCGACTCATCTGGAAGTTATCGTTTGACAGGACTTGTTCCTGACACAACCTATGTAATCAAAGTAGTAAAAAGGGATGGTTTGGGCAGCAGTAAAATTGAGAGGGCATCACCAGACTCGGTTCCAGTTAAGACTTTCTGGTGTTTGAACAGCCAGACACATGCTATTTTAAGTTGCCATGTTGAAGGAATGAAGAATGAGGAACTCCACTCTCATCTACTGGTGGAAATCAAATCATCTAGTGACAATTCTAGGATCGAGTCCGACTTACCCAAGGGTAAGCACCTTCTGCAACTCCGGTCTAGTCTTCCATCTATCAGCCACAAATTTGAATCCGAGATTATTGAGGTCGATTTAGAGAAGAATACTCATATACATGTTGGCCCACTCAAATACGTTTATGAAGAGGCTCACCAGAAGCAGGATTTGACTCCGGCACCAGTGTTTCCTCTTATCGTAGGAGTCTCAGTGATTGCTCTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CarboxypepD_reg

Protein Analysis

192

Amino Acids

21.23

Weight (kDa)

6.13

Isoelectric Point (pI)

65.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CarboxypepD_reg	PF13620	2 - 60	5.5e-07	Carboxypeptidase regulatory-like domain
DUF7152	PF23662	86 - 170	5.6e-29	Domain of unknown function (DUF7152)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017790)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0134311 RchiOBHm_Chr5g0064851 RchiOBHm_Chr7g0217491
rosa_multiflora	Rmu_sc0000368.1_g000029
rosa_roxburghii	Rroxscaffold_2G00108920 Rroxscaffold_4G00278930 Rroxscaffold_5G00368450 Rroxscaffold_6G00389850
rosa_rugosa	Rorug03G0029500
rosa_samantha	Rh3DG316600 Rh3DG316800
rosa_wichuraiana	Rw3G025100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	529
AclWI	GGATC	1 cut(s)	356
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	419
AfiI	CCNNNNNNNGG	2 cut(s)	38, 514
AflIII	ACRYGT	1 cut(s)	469
AgsI	TTSAA	3 cut(s)	241, 278, 425
Alw26I	GTCTC	1 cut(s)	562
AlwI	GGATC	1 cut(s)	356
AoxI	GGCC	3 cut(s)	25, 54, 475
ApeKI	GCWGC	1 cut(s)	180
ApoI	RAATTY	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	2 cut(s)	195, 497
BalI	TGGCCA	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	529
BbsI	GAAGAC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	192
BccI	CCATC	2 cut(s)	164, 412
BcoDI	GTCTC	1 cut(s)	562
BfaI	CTAG	3 cut(s)	333, 345, 396
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	2 cut(s)	216, 531
BmsI	GCATC	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	366
BsaWI	WCCGGW	1 cut(s)	390
BsaXI	ACNNNNNCTCC	2 cut(s)	546, 576
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 514
Bse1I	ACTGG	3 cut(s)	218, 318, 533
Bse8I	GATNNNNATC	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	1 cut(s)	64
BseLI	CCNNNNNNNGG	2 cut(s)	38, 514
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	3 cut(s)	218, 318, 533
BseXI	GCAGC	1 cut(s)	192
BshFI	GGCC	3 cut(s)	27, 56, 477
BshNI	GGYRCC	1 cut(s)	529
BsiSI	CCGG	2 cut(s)	391, 527
BslI	CCNNNNNNNGG	2 cut(s)	38, 514
BsmAI	GTCTC	1 cut(s)	562
BsnI	GGCC	3 cut(s)	27, 56, 477
Bsp143I	GATC	3 cut(s)	48, 59, 348
BspANI	GGCC	3 cut(s)	27, 56, 477
BspCNI	CTCAG	1 cut(s)	572
BspLI	GGNNCC	2 cut(s)	216, 531
BspPI	GGATC	1 cut(s)	356
BspT107I	GGYRCC	1 cut(s)	529
BsrI	ACTGG	3 cut(s)	218, 318, 533
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	3 cut(s)	48, 59, 348
BssT1I	CCWWGG	1 cut(s)	366
Bst6I	CTCTTC	1 cut(s)	492
BstAPI	GCANNNNNTGC	1 cut(s)	382
BstDEI	CTNAG	1 cut(s)	559
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	3 cut(s)	51, 62, 351
BstMAI	GTCTC	1 cut(s)	562
BstMBI	GATC	3 cut(s)	48, 59, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BstNSI	RCATGY	2 cut(s)	257, 473
BstV1I	GCAGC	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	392
BsuRI	GGCC	3 cut(s)	27, 56, 477
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	2 cut(s)	540, 567
Cfr13I	GGNCC	1 cut(s)	476
CviAII	CATG	3 cut(s)	254, 272, 470
CviJI	RGCY	7 cut(s)	27, 56, 75, 246, 414, 477, 503
CviKI_1	RGCY	7 cut(s)	27, 56, 75, 246, 414, 477, 503
DdeI	CTNAG	1 cut(s)	559
DpnI	GATC	3 cut(s)	50, 61, 350
DpnII	GATC	3 cut(s)	48, 59, 348
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Eco130I	CCWWGG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	3 cut(s)	257, 275, 473
FaiI	YATR	7 cut(s)	147, 255, 273, 465, 467, 471, 495
FatI	CATG	3 cut(s)	253, 271, 469
Fnu4HI	GCNGC	1 cut(s)	181
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	3 cut(s)	333, 345, 396
GluI	GCNGC	1 cut(s)	181
HaeIII	GGCC	3 cut(s)	27, 56, 477
HapII	CCGG	2 cut(s)	391, 527
Hin1II	CATG	3 cut(s)	257, 275, 473
HinfI	GANTC	7 cut(s)	65, 98, 209, 353, 425, 523, 555
HpaII	CCGG	2 cut(s)	391, 527
HphI	GGTGA	2 cut(s)	195, 497
Hpy188I	TCNGA	3 cut(s)	64, 358, 430
Hpy188III	TCNNGA	3 cut(s)	46, 105, 134
HpyAV	CCTTC	3 cut(s)	32, 272, 389
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
HpyF3I	CTNAG	1 cut(s)	559
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	3 cut(s)	257, 275, 473
Kzo9I	GATC	3 cut(s)	48, 59, 348
Lsp1109I	GCAGC	1 cut(s)	192
LweI	GCATC	1 cut(s)	209
MaeI	CTAG	3 cut(s)	333, 345, 396
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	2 cut(s)	91, 335
MalI	GATC	3 cut(s)	50, 61, 350
MboI	GATC	3 cut(s)	48, 59, 348
MboII	GAAGA	4 cut(s)	298, 392, 466, 509
MlsI	TGGCCA	1 cut(s)	27
MluCI	AATT	3 cut(s)	189, 340, 419
MluNI	TGGCCA	1 cut(s)	27
MlyI	GAGTC	5 cut(s)	92, 203, 362, 517, 564
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	7 cut(s)	46, 76, 189, 286, 433, 493, 552
Mox20I	TGGCCA	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	27
MseI	TTAA	2 cut(s)	222, 263
MslI	CAYNNNNRTG	1 cut(s)	468
Msp20I	TGGCCA	1 cut(s)	27
MspI	CCGG	2 cut(s)	391, 527
MwoI	GCNNNNNNNGC	1 cut(s)	382
NdeII	GATC	3 cut(s)	48, 59, 348
NlaIII	CATG	3 cut(s)	257, 275, 473
NlaIV	GGNNCC	2 cut(s)	216, 531
NmuCI	GTSAC	2 cut(s)	91, 335
NspI	RCATGY	2 cut(s)	257, 473
PciI	ACATGT	1 cut(s)	469
PfeI	GAWTC	2 cut(s)	65, 425
PkrI	GCNGC	1 cut(s)	182
PleI	GAGTC	5 cut(s)	92, 203, 361, 517, 563
PpsI	GAGTC	5 cut(s)	92, 203, 361, 517, 563
PscI	ACATGT	1 cut(s)	469
PspN4I	GGNNCC	2 cut(s)	216, 531
PspPI	GGNCC	1 cut(s)	476
RseI	CAYNNNNRTG	1 cut(s)	468
SaqAI	TTAA	2 cut(s)	222, 263
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	3 cut(s)	48, 59, 348
Sau96I	GGNCC	1 cut(s)	476
SchI	GAGTC	5 cut(s)	92, 203, 362, 517, 564
SetI	ASST	5 cut(s)	43, 146, 381, 444, 492
SfaNI	GCATC	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	468
Sse9I	AATT	3 cut(s)	189, 340, 419
SspMI	CTAG	3 cut(s)	333, 345, 396
StyI	CCWWGG	1 cut(s)	366
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	3 cut(s)	51, 351, 444
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	3 cut(s)	189, 340, 419
TfiI	GAWTC	2 cut(s)	65, 425
Tru1I	TTAA	2 cut(s)	222, 263
Tru9I	TTAA	2 cut(s)	222, 263
TscAI	CASTG	2 cut(s)	540, 567
TseFI	GTSAC	2 cut(s)	91, 335
TseI	GCWGC	1 cut(s)	180
Tsp45I	GTSAC	2 cut(s)	91, 335
TspDTI	ATGAA	2 cut(s)	299, 510
TspRI	CASTG	2 cut(s)	540, 567
XapI	RAATTY	1 cut(s)	419
XceI	RCATGY	2 cut(s)	257, 473
XspI	CTAG	3 cut(s)	333, 345, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.