RchiOBHm_Chr5g0064851

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
70777404 .. 70780846
3443 bp
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UTR
Exon/CDS
Intron
PRQ34078

Sequence Viewer

Length: 306 bp
ATGAAACCCTTCTTGATTGGTGTTGATCCCCTTTTCAGCCTTTGCACTTCCAAAAGGCTGCAAGCTAATGCAAATCTCTTAGAACCCATTAGTTTTCTCAAGGATTTGGCTTTAAAGGAGACTATTTTCGCACTTGGAGTTCGAGTTGCAGACTTGGAGTTCAATTGTTGGAGTTCGATTTGCAGCAAAAGATTTGAAGCCTCTGTTCCTCATTCCATAAAGATGGAGCTTTTGCGAAGGACTTGTACGAAAAATACTGGGAAGATCATCCTGGCTGTGAGCCCCGGAAAAGTTTATCGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.27

Weight (kDa)

9.59

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 20
AfaI GTAC 1 cut(s) 247
AgsI TTSAA 2 cut(s) 163, 197
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 3 cut(s) 65, 229, 302
AluI AGCT 3 cut(s) 65, 229, 302
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 1 cut(s) 20
ApeKI GCWGC 2 cut(s) 58, 183
Asp700I GAANNNNTTC 1 cut(s) 8
AsuC2I CCSGG 1 cut(s) 285
BanII GRGCYC 1 cut(s) 284
BarI GAAGNNNNNNTAC 2 cut(s) 229, 261
BbvI GCAGC 2 cut(s) 45, 195
BccI CCATC 1 cut(s) 217
BciT130I CCWGG 1 cut(s) 272
BcnI CCSGG 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 113
BisI GCNGC 2 cut(s) 59, 184
BlsI GCNGC 2 cut(s) 60, 185
Bme1390I CCNGG 2 cut(s) 272, 285
BmrFI CCNGG 2 cut(s) 272, 285
BmrI ACTGGG 1 cut(s) 267
BmuI ACTGGG 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 283
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bse1I ACTGG 1 cut(s) 262
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 262
BseXI GCAGC 2 cut(s) 45, 195
BsiSI CCGG 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 2 cut(s) 25, 264
BspPI GGATC 1 cut(s) 20
BsrI ACTGG 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 2 cut(s) 25, 264
Bst2UI CCWGG 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 79
BstF5I GGATG 1 cut(s) 267
BstKTI GATC 2 cut(s) 28, 267
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 2 cut(s) 25, 264
BstNI CCWGG 1 cut(s) 272
BstSCI CCNGG 2 cut(s) 270, 283
BstV1I GCAGC 2 cut(s) 45, 195
BstXI CCANNNNNNTGG 1 cut(s) 223
BtsCI GGATG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 63
Csp6I GTAC 1 cut(s) 246
CviJI RGCY 9 cut(s) 39, 58, 65, 110, 200, 229, 275, 282, 302
CviKI_1 RGCY 9 cut(s) 39, 58, 65, 110, 200, 229, 275, 282, 302
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 1 cut(s) 79
DpnI GATC 2 cut(s) 27, 266
DpnII GATC 2 cut(s) 25, 264
DraI TTTAAA 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 270
EcoT38I GRGCYC 1 cut(s) 284
FaiI YATR 1 cut(s) 218
Fnu4HI GCNGC 2 cut(s) 59, 184
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 59, 184
GluI GCNGC 2 cut(s) 59, 184
HapII CCGG 1 cut(s) 285
HpaII CCGG 1 cut(s) 285
Hpy188III TCNNGA 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 19, 231
HpyCH4V TGCA 5 cut(s) 45, 61, 71, 149, 183
HpyF3I CTNAG 1 cut(s) 79
Kzo9I GATC 2 cut(s) 25, 264
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 4 cut(s) 243, 257, 284, 298
Lsp1109I GCAGC 2 cut(s) 45, 195
MalI GATC 2 cut(s) 27, 266
MboI GATC 2 cut(s) 25, 264
MboII GAAGA 1 cut(s) 274
MfeI CAATTG 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 1 cut(s) 163
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 2 cut(s) 211, 219
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 113, 304
MslI CAYNNNNRTG 1 cut(s) 221
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 2 cut(s) 272, 285
MunI CAATTG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 272
NciI CCSGG 1 cut(s) 285
NdeII GATC 2 cut(s) 25, 264
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 2 cut(s) 60, 185
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 221
SaqAI TTAA 2 cut(s) 113, 304
SatI GCNGC 2 cut(s) 59, 184
Sau3AI GATC 2 cut(s) 25, 264
ScrFI CCNGG 2 cut(s) 272, 285
SduI GDGCHC 1 cut(s) 284
SetI ASST 3 cut(s) 67, 231, 304
SmiMI CAYNNNNRTG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 1 cut(s) 163
StyD4I CCNGG 2 cut(s) 270, 283
TaqI TCGA 3 cut(s) 142, 176, 298
TasI AATT 1 cut(s) 163
Tru1I TTAA 2 cut(s) 113, 304
Tru9I TTAA 2 cut(s) 113, 304
TseI GCWGC 2 cut(s) 58, 183
TspDTI ATGAA 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.