Rroxscaffold_6G00389850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0017790
Physical Location & Seq
Forward (+)
3905492 .. 3907815
2324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389850.1

Sequence Viewer

Length: 417 bp
ATGGGTCTTTTGCCGGATGGACAGCTAACGTTTATTTTTGACCAACCAAATTATGTTCCAACCCATATGTCTATTACACGTGTATTTGACATAAGAGCATCCTCTGTCAAATTTGACGGATTCTCCCATTTCGGTCTTTTATTTTTTTATTGTTTCTCTCTCTCGCTCTCGCTCTTTCTCTCTCTCGATCTCTTTCCCTTTCGCGTCTTTCTTCCTCTGCTCTCACCCAAAACTTCAAGCTTCCTCTCCTCCGGGGCGGATCCGGCCACGGGTCGGGTAGGGCTCAAGCCCCACCGGGCAAAGGGGAACACTCTTTTCCTCTCTCAAGCGCTGTTCCTTCACTTCTTCTCCTCCTCTCCGCCAAATAACAAACCCATTGGAGATGCTCTAACAAAAACTAGGATTAAATACTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.39

Weight (kDa)

9.69

Isoelectric Point (pI)

37.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 204
AciI CCGC 2 cut(s) 257, 359
AclI AACGTT 1 cut(s) 29
AclWI GGATC 2 cut(s) 254, 267
AcoI YGGCCR 1 cut(s) 264
AcsI RAATTY 1 cut(s) 110
AcvI CACGTG 1 cut(s) 80
AfeI AGCGCT 1 cut(s) 330
AfiI CCNNNNNNNGG 3 cut(s) 269, 273, 301
AflIII ACRYGT 2 cut(s) 77, 79
AgsI TTSAA 1 cut(s) 237
AluBI AGCT 2 cut(s) 25, 240
AluI AGCT 2 cut(s) 25, 240
AlwI GGATC 2 cut(s) 254, 267
Aor51HI AGCGCT 1 cut(s) 330
AoxI GGCC 1 cut(s) 264
ApoI RAATTY 1 cut(s) 110
AspLEI GCGC 1 cut(s) 331
AsuC2I CCSGG 2 cut(s) 253, 296
AsuHPI GGTGA 1 cut(s) 216
BamHI GGATCC 1 cut(s) 259
BanII GRGCYC 1 cut(s) 285
BbrPI CACGTG 1 cut(s) 80
BccI CCATC 1 cut(s) 11
BcnI CCSGG 2 cut(s) 253, 296
BfaI CTAG 1 cut(s) 399
BfoI RGCGCY 1 cut(s) 332
Bme1390I CCNGG 2 cut(s) 253, 296
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 2 cut(s) 253, 296
BmsI GCATC 2 cut(s) 107, 373
BpuEI CTTGAG 2 cut(s) 269, 309
BpuMI CCSGG 2 cut(s) 253, 296
BsaAI YACGTR 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 252, 267
BsaXI ACNNNNNCTCC 4 cut(s) 107, 137, 332, 362
Bsc4I CCNNNNNNNGG 3 cut(s) 269, 273, 301
BseDI CCNNGG 2 cut(s) 252, 267
BseGI GGATG 2 cut(s) 22, 98
BseLI CCNNNNNNNGG 3 cut(s) 269, 273, 301
BseRI GAGGAG 3 cut(s) 238, 340, 343
Bsh1236I CGCG 1 cut(s) 204
BshFI GGCC 1 cut(s) 266
BsiSI CCGG 4 cut(s) 14, 252, 263, 295
BslI CCNNNNNNNGG 3 cut(s) 269, 273, 301
BsnI GGCC 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 2 cut(s) 187, 259
BspACI CCGC 2 cut(s) 257, 359
BspANI GGCC 1 cut(s) 266
BspFNI CGCG 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 2 cut(s) 254, 267
BssECI CCNNGG 2 cut(s) 252, 267
BssMI GATC 2 cut(s) 187, 259
Bst4CI ACNGT 1 cut(s) 413
BstBAI YACGTR 1 cut(s) 80
BstDSI CCRYGG 1 cut(s) 267
BstF5I GGATG 2 cut(s) 22, 98
BstFNI CGCG 1 cut(s) 204
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 2 cut(s) 190, 262
BstMBI GATC 2 cut(s) 187, 259
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstSCI CCNGG 2 cut(s) 251, 294
BstUI CGCG 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BsuRI GGCC 1 cut(s) 266
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 2 cut(s) 22, 98
CfoI GCGC 1 cut(s) 331
CseI GACGC 1 cut(s) 193
CviJI RGCY 5 cut(s) 25, 240, 266, 283, 289
CviKI_1 RGCY 5 cut(s) 25, 240, 266, 283, 289
DpnI GATC 2 cut(s) 189, 261
DpnII GATC 2 cut(s) 187, 259
EaeI YGGCCR 1 cut(s) 264
EciI GGCGGA 2 cut(s) 272, 348
Eco24I GRGCYC 1 cut(s) 285
Eco47III AGCGCT 1 cut(s) 330
Eco72I CACGTG 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 285
FaiI YATR 4 cut(s) 54, 66, 68, 92
FauNDI CATATG 1 cut(s) 66
FokI GGATG 2 cut(s) 29, 85
FriOI GRGCYC 1 cut(s) 285
FspBI CTAG 1 cut(s) 399
GlaI GCGC 1 cut(s) 330
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 1 cut(s) 266
HapII CCGG 4 cut(s) 14, 252, 263, 295
HgaI GACGC 1 cut(s) 193
HhaI GCGC 1 cut(s) 331
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HindIII AAGCTT 1 cut(s) 238
HinfI GANTC 1 cut(s) 120
HpaII CCGG 4 cut(s) 14, 252, 263, 295
HphI GGTGA 1 cut(s) 216
Hpy188III TCNNGA 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 347
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4IV ACGT 2 cut(s) 29, 79
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpySE526I ACGT 2 cut(s) 29, 79
HspAI GCGC 1 cut(s) 329
Kzo9I GATC 2 cut(s) 187, 259
LpnPI CCDG 4 cut(s) 27, 265, 276, 308
LweI GCATC 2 cut(s) 107, 373
MaeI CTAG 1 cut(s) 399
MaeII ACGT 2 cut(s) 29, 79
MalI GATC 2 cut(s) 189, 261
MboI GATC 2 cut(s) 187, 259
MboII GAAGA 2 cut(s) 203, 337
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 2 cut(s) 49, 110
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 7 cut(s) 112, 225, 254, 259, 329, 361, 364
MseI TTAA 2 cut(s) 405, 415
MspI CCGG 4 cut(s) 14, 252, 263, 295
MspR9I CCNGG 2 cut(s) 253, 296
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 263
NciI CCSGG 2 cut(s) 253, 296
NdeI CATATG 1 cut(s) 66
NdeII GATC 2 cut(s) 187, 259
NlaIV GGNNCC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 120
PmaCI CACGTG 1 cut(s) 80
PmlI CACGTG 1 cut(s) 80
Ppu21I YACGTR 1 cut(s) 80
Psp1406I AACGTT 1 cut(s) 29
PspCI CACGTG 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 261
PsuI RGATCY 1 cut(s) 259
SaqAI TTAA 2 cut(s) 405, 415
Sau3AI GATC 2 cut(s) 187, 259
ScrFI CCNGG 2 cut(s) 253, 296
SduI GDGCHC 1 cut(s) 285
SetI ASST 4 cut(s) 27, 32, 82, 242
SfaNI GCATC 2 cut(s) 107, 373
SmlI CTYRAG 2 cut(s) 284, 324
SmoI CTYRAG 2 cut(s) 284, 324
Sse9I AATT 2 cut(s) 49, 110
SsiI CCGC 2 cut(s) 257, 359
SspMI CTAG 1 cut(s) 399
StyD4I CCNGG 2 cut(s) 251, 294
TaaI ACNGT 1 cut(s) 413
TaiI ACGT 2 cut(s) 32, 82
TaqI TCGA 1 cut(s) 186
TaqII GACCGA 1 cut(s) 122
TasI AATT 2 cut(s) 49, 110
TfiI GAWTC 1 cut(s) 120
Tru1I TTAA 2 cut(s) 405, 415
Tru9I TTAA 2 cut(s) 405, 415
TspGWI ACGGA 1 cut(s) 132
XapI RAATTY 1 cut(s) 110
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.