Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0017790

Physical Location & Seq

Genomic Coordinates Reverse (-)

34105666 .. 34107521

Gene Structure 1856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG316800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGGAGTGGTCGCTTTGTTGTCTGGCCAACCAAAGGAAGGTGTCTTGATCGTGGCCAGATCAGAATCAAAAGGCTTCTACGAGGAAAGAGTGACCGACTCATCTGGAAGTTATCGTTTGAGAGGACTTGTTCCTGACACAACCTATGTAATCAAAGTAGTAAAAAGGGATGGTTTGGGCAGCAGTAAAATTGAGAGGGCATCACCAGACTCGGTTCCAGTTAAGCCAGACACAACTATTTTAACTTGTCTTGTTGAAGGAATGAAGAATGAGGAACTCCACTCGCATCTACTGGTGGAAATCAAATCATCTAGTGACAATTCTAGGATCGAGTCCGTCTTCCCTCTTCCGCTTTCAAACTTTTTCCAGGTGAAGGACTTACCCAAGGGTAAGCACCTTCTACAACTCCGGTCTAGTCTTCCATCTATCAGCAGCCACAAATTTGAATCCAAGATTATTGAGGTCGATTTAGAGAAGAATACTCATATACATGTTGGCCCACTCAAATACGTTTATGAAGAGGATCACCAGAAGCAGGAAAAGCTTGCACTAGCTGGGGCTCTTCATGCCCTAATTTTTTTGGCTAATCACTCCCCCCCCCTTCGTGACCTAATTCTTGGCCTCCTATGCTGTATTATTGTTAATAGAGTACAGGCCCTCTTGTTAAGAGCATGTAATGGCGTGTATTTCCTACATTTTTTACAACAAAAAAGTTCTACAACAGCAACAAGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CarboxypepD_reg

Protein Analysis

245

Amino Acids

27.13

Weight (kDa)

8.6

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CarboxypepD_reg	PF13620	2 - 61	4.4e-07	Carboxypeptidase regulatory-like domain
DUF7152	PF23662	77 - 177	1.5e-44	Domain of unknown function (DUF7152)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017790)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0134311 RchiOBHm_Chr5g0064851 RchiOBHm_Chr7g0217491
rosa_multiflora	Rmu_sc0000368.1_g000029
rosa_roxburghii	Rroxscaffold_2G00108920 Rroxscaffold_4G00278930 Rroxscaffold_5G00368450 Rroxscaffold_6G00389850
rosa_rugosa	Rorug03G0029500
rosa_samantha	Rh3DG316600 Rh3DG316800
rosa_wichuraiana	Rw3G025100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	350
AclWI	GGATC	2 cut(s)	335, 531
AcoI	YGGCCR	2 cut(s)	25, 54
AcsI	RAATTY	1 cut(s)	440
AfaI	GTAC	1 cut(s)	651
AfiI	CCNNNNNNNGG	4 cut(s)	34, 38, 373, 535
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	3 cut(s)	257, 357, 446
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	2 cut(s)	544, 554
AluI	AGCT	2 cut(s)	544, 554
AlwI	GGATC	2 cut(s)	335, 531
AoxI	GGCC	5 cut(s)	25, 54, 496, 619, 654
ApeKI	GCWGC	2 cut(s)	180, 432
ApoI	RAATTY	1 cut(s)	440
AspS9I	GGNCC	2 cut(s)	497, 655
AsuHPI	GGTGA	3 cut(s)	195, 382, 518
BalI	TGGCCA	2 cut(s)	27, 56
BanII	GRGCYC	1 cut(s)	562
BbsI	GAAGAC	2 cut(s)	331, 410
BbvI	GCAGC	2 cut(s)	192, 444
BccI	CCATC	2 cut(s)	164, 430
BciT130I	CCWGG	1 cut(s)	368
BfaI	CTAG	4 cut(s)	312, 324, 414, 551
BisI	GCNGC	2 cut(s)	181, 433
BlsI	GCNGC	2 cut(s)	182, 434
Bme1390I	CCNGG	1 cut(s)	368
BmgT120I	GGNCC	2 cut(s)	497, 655
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	368
BmsI	GCATC	2 cut(s)	209, 295
BpiI	GAAGAC	2 cut(s)	331, 410
BsaBI	GATNNNNATC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	384
BsaWI	WCCGGW	1 cut(s)	408
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 38, 373, 535
Bse1I	ACTGG	2 cut(s)	218, 297
Bse8I	GATNNNNATC	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	1 cut(s)	64
BseLI	CCNNNNNNNGG	4 cut(s)	34, 38, 373, 535
BseNI	ACTGG	2 cut(s)	218, 297
BseXI	GCAGC	2 cut(s)	192, 444
BseYI	CCCAGC	1 cut(s)	554
BshFI	GGCC	5 cut(s)	27, 56, 498, 621, 656
BsiSI	CCGG	1 cut(s)	409
BslI	CCNNNNNNNGG	4 cut(s)	34, 38, 373, 535
BsnI	GGCC	5 cut(s)	27, 56, 498, 621, 656
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp143I	GATC	4 cut(s)	48, 59, 327, 523
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	5 cut(s)	27, 56, 498, 621, 656
BspLI	GGNNCC	1 cut(s)	216
BspPI	GGATC	2 cut(s)	335, 531
BspQI	GCTCTTC	1 cut(s)	567
BsrI	ACTGG	2 cut(s)	218, 297
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	4 cut(s)	48, 59, 327, 523
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	368
Bst6I	CTCTTC	3 cut(s)	351, 513, 567
BstC8I	GCNNGC	1 cut(s)	546
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	4 cut(s)	51, 62, 330, 526
BstMBI	GATC	4 cut(s)	48, 59, 327, 523
BstMWI	GCNNNNNNNGC	3 cut(s)	541, 566, 627
BstNI	CCWGG	1 cut(s)	368
BstNSI	RCATGY	2 cut(s)	494, 675
BstSCI	CCNGG	1 cut(s)	366
BstV1I	GCAGC	2 cut(s)	192, 444
BstV2I	GAAGAC	2 cut(s)	331, 410
BsuRI	GGCC	5 cut(s)	27, 56, 498, 621, 656
BtsCI	GGATG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	546
Cfr13I	GGNCC	2 cut(s)	497, 655
Csp6I	GTAC	1 cut(s)	650
CviAII	CATG	3 cut(s)	491, 566, 672
CviQI	GTAC	1 cut(s)	650
DpnI	GATC	4 cut(s)	50, 61, 329, 525
DpnII	GATC	4 cut(s)	48, 59, 327, 523
EaeI	YGGCCR	2 cut(s)	25, 54
Eam1104I	CTCTTC	3 cut(s)	351, 513, 567
EarI	CTCTTC	3 cut(s)	351, 513, 567
Eco130I	CCWWGG	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	562
EcoO109I	RGGNCCY	1 cut(s)	655
EcoRII	CCWGG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	384
EcoT38I	GRGCYC	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	3 cut(s)	494, 569, 675
FaiI	YATR	8 cut(s)	147, 486, 488, 492, 516, 567, 628, 673
FatI	CATG	3 cut(s)	490, 565, 671
Fnu4HI	GCNGC	2 cut(s)	181, 433
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	2 cut(s)	181, 433
FspBI	CTAG	4 cut(s)	312, 324, 414, 551
GluI	GCNGC	2 cut(s)	181, 433
GsaI	CCCAGC	1 cut(s)	558
HaeIII	GGCC	5 cut(s)	27, 56, 498, 621, 656
HapII	CCGG	1 cut(s)	409
Hin1II	CATG	3 cut(s)	494, 569, 675
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	5 cut(s)	65, 98, 209, 332, 446
HpaII	CCGG	1 cut(s)	409
HphI	GGTGA	3 cut(s)	195, 382, 518
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	4 cut(s)	46, 105, 134, 605
HpyAV	CCTTC	5 cut(s)	32, 251, 367, 407, 611
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	1 cut(s)	548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	541, 566, 627
HpySE526I	ACGT	1 cut(s)	510
Hsp92II	CATG	3 cut(s)	494, 569, 675
Kzo9I	GATC	4 cut(s)	48, 59, 327, 523
LguI	GCTCTTC	1 cut(s)	567
Lsp1109I	GCAGC	2 cut(s)	192, 444
LweI	GCATC	2 cut(s)	209, 295
MaeI	CTAG	4 cut(s)	312, 324, 414, 551
MaeII	ACGT	1 cut(s)	510
MaeIII	GTNAC	3 cut(s)	91, 314, 605
MalI	GATC	4 cut(s)	50, 61, 329, 525
MboI	GATC	4 cut(s)	48, 59, 327, 523
MboII	GAAGA	7 cut(s)	277, 331, 338, 410, 487, 530, 554
MhlI	GDGCHC	1 cut(s)	562
MlsI	TGGCCA	2 cut(s)	27, 56
MluCI	AATT	5 cut(s)	189, 319, 440, 573, 612
MluNI	TGGCCA	2 cut(s)	27, 56
MlyI	GAGTC	3 cut(s)	92, 203, 341
MnlI	CCTC	9 cut(s)	76, 116, 189, 265, 354, 454, 514, 632, 668
Mox20I	TGGCCA	2 cut(s)	27, 56
MscI	TGGCCA	2 cut(s)	27, 56
MseI	TTAA	4 cut(s)	222, 242, 642, 665
MslI	CAYNNNNRTG	1 cut(s)	489
Msp20I	TGGCCA	2 cut(s)	27, 56
MspI	CCGG	1 cut(s)	409
MspR9I	CCNGG	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	3 cut(s)	541, 566, 627
NdeII	GATC	4 cut(s)	48, 59, 327, 523
NlaIII	CATG	3 cut(s)	494, 569, 675
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	3 cut(s)	91, 314, 605
NspI	RCATGY	2 cut(s)	494, 675
PciI	ACATGT	1 cut(s)	490
PciSI	GCTCTTC	1 cut(s)	567
PfeI	GAWTC	2 cut(s)	65, 446
PkrI	GCNGC	2 cut(s)	182, 434
PleI	GAGTC	3 cut(s)	92, 203, 340
PpsI	GAGTC	3 cut(s)	92, 203, 340
PscI	ACATGT	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	366
PspFI	CCCAGC	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	2 cut(s)	497, 655
RsaI	GTAC	1 cut(s)	651
RsaNI	GTAC	1 cut(s)	650
RseI	CAYNNNNRTG	1 cut(s)	489
SapI	GCTCTTC	1 cut(s)	567
SaqAI	TTAA	4 cut(s)	222, 242, 642, 665
SatI	GCNGC	2 cut(s)	181, 433
Sau3AI	GATC	4 cut(s)	48, 59, 327, 523
Sau96I	GGNCC	2 cut(s)	497, 655
SchI	GAGTC	3 cut(s)	92, 203, 341
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	1 cut(s)	562
SetI	ASST	9 cut(s)	43, 146, 372, 399, 465, 513, 546, 556, 612
SfaNI	GCATC	2 cut(s)	209, 295
SmiMI	CAYNNNNRTG	1 cut(s)	489
Sse9I	AATT	5 cut(s)	189, 319, 440, 573, 612
SsiI	CCGC	1 cut(s)	350
SspMI	CTAG	4 cut(s)	312, 324, 414, 551
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	384
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	2 cut(s)	330, 465
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	5 cut(s)	189, 319, 440, 573, 612
TatI	WGTACW	1 cut(s)	649
TfiI	GAWTC	2 cut(s)	65, 446
Tru1I	TTAA	4 cut(s)	222, 242, 642, 665
Tru9I	TTAA	4 cut(s)	222, 242, 642, 665
TseFI	GTSAC	3 cut(s)	91, 314, 605
TseI	GCWGC	2 cut(s)	180, 432
Tsp45I	GTSAC	3 cut(s)	91, 314, 605
TspDTI	ATGAA	3 cut(s)	278, 531, 554
TspGWI	ACGGA	1 cut(s)	325
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	2 cut(s)	494, 675
XspI	CTAG	4 cut(s)	312, 324, 414, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.