Rroxscaffold_4G00278930

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
1873194 .. 1873946
753 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00278930.1

Sequence Viewer

Length: 477 bp
ATGACCGAAATGGAGACTCTATTCTTGTTGGCAAATGCAAATACGAATTCGAATCCACTGATTTCCATCCCCATGTTCTCTATTGGTCTTTTGACACCTGACATTCCAACGAATAGTTTTGTAGGTCCAAATTGTTCTCCAACGGATATGCCTTATCCACGTGGATTTGACATGTCTCCTCTGTCAAATTTGACAGTGTCTTCTCCTTCTGTCTTTTATTTTTTTTATTGTTTCTCGGTGCTTCTCTCTCCTTCATTCTCGCTTCTTTCTTCCTTCATCTCACCCAGAACCGATTTCAGCCTACGCACTTCCAAAACGCAGCAAAAAAATGATAAAAATCTCTTACAACCCATTAGTTTTCTCAAGAATTTGGCTTTAAAGGAGATTCTTTTCTCACTTGGAATTCGAGTTGGAGACTTGGAGCAACCGAGCAAGAGATTTGGATTATGGGAGTTCGATTGGCAGCAAATGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.84

Weight (kDa)

5.29

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 46, 187, 367, 402
AcvI CACGTG 1 cut(s) 161
AflIII ACRYGT 1 cut(s) 171
Alw26I GTCTC 3 cut(s) 8, 180, 408
ApeKI GCWGC 2 cut(s) 319, 463
ApoI RAATTY 4 cut(s) 46, 187, 367, 402
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 273
AsuII TTCGAA 1 cut(s) 50
AvaII GGWCC 1 cut(s) 125
BbrPI CACGTG 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 331
BccI CCATC 1 cut(s) 74
BcoDI GTCTC 3 cut(s) 8, 180, 408
BisI GCNGC 2 cut(s) 320, 464
BlsI GCNGC 2 cut(s) 321, 465
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BpiI GAAGAC 1 cut(s) 192
Bpu14I TTCGAA 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 347
BsaAI YACGTR 1 cut(s) 161
BsaBI GATNNNNATC 2 cut(s) 65, 336
Bse8I GATNNNNATC 2 cut(s) 65, 336
BseGI GGATG 1 cut(s) 66
BseJI GATNNNNATC 2 cut(s) 65, 336
BseRI GAGGAG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 331
BsmAI GTCTC 3 cut(s) 8, 180, 408
Bsp119I TTCGAA 1 cut(s) 50
BspT104I TTCGAA 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 196
BstBAI YACGTR 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 50
BstF5I GGATG 1 cut(s) 66
BstMAI GTCTC 3 cut(s) 8, 180, 408
BstNSI RCATGY 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 331
BstV2I GAAGAC 1 cut(s) 192
BtsCI GGATG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 56, 201
Cfr13I GGNCC 1 cut(s) 125
CviAII CATG 2 cut(s) 73, 172
CviJI RGCY 2 cut(s) 300, 374
CviKI_1 RGCY 2 cut(s) 300, 374
DraI TTTAAA 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 125
Eco72I CACGTG 1 cut(s) 161
EcoRI GAATTC 2 cut(s) 46, 402
FaeI CATG 2 cut(s) 76, 175
FaiI YATR 4 cut(s) 74, 149, 173, 448
FatI CATG 2 cut(s) 72, 171
Fnu4HI GCNGC 2 cut(s) 320, 464
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 2 cut(s) 320, 464
GluI GCNGC 2 cut(s) 320, 464
Hin1II CATG 2 cut(s) 76, 175
HinfI GANTC 3 cut(s) 16, 52, 385
HphI GGTGA 1 cut(s) 273
Hpy188III TCNNGA 1 cut(s) 364
HpyAV CCTTC 3 cut(s) 216, 261, 283
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 38
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 2 cut(s) 76, 175
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 2 cut(s) 111, 298
Lsp1109I GCAGC 1 cut(s) 331
MaeII ACGT 1 cut(s) 160
MboII GAAGA 2 cut(s) 192, 261
MluCI AATT 5 cut(s) 46, 130, 187, 367, 402
MlyI GAGTC 1 cut(s) 10
MmeI TCCRAC 3 cut(s) 131, 164, 391
MnlI CCTC 1 cut(s) 189
MseI TTAA 1 cut(s) 377
MslI CAYNNNNRTG 1 cut(s) 71
NlaIII CATG 2 cut(s) 76, 175
NspI RCATGY 1 cut(s) 175
NspV TTCGAA 1 cut(s) 50
PciI ACATGT 1 cut(s) 171
PfeI GAWTC 2 cut(s) 52, 385
PflFI GACNNNGTC 1 cut(s) 196
PkrI GCNGC 2 cut(s) 321, 465
PleI GAGTC 1 cut(s) 10
PmaCI CACGTG 1 cut(s) 161
PmlI CACGTG 1 cut(s) 161
PpsI GAGTC 1 cut(s) 10
Ppu21I YACGTR 1 cut(s) 161
PscI ACATGT 1 cut(s) 171
PspCI CACGTG 1 cut(s) 161
PspPI GGNCC 1 cut(s) 125
PsyI GACNNNGTC 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 71
SaqAI TTAA 1 cut(s) 377
SatI GCNGC 2 cut(s) 320, 464
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 10
SetI ASST 3 cut(s) 100, 127, 163
SfuI TTCGAA 1 cut(s) 50
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 5 cut(s) 46, 130, 187, 367, 402
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 163
TaqI TCGA 3 cut(s) 50, 406, 456
TaqII GACCGA 1 cut(s) 20
TasI AATT 5 cut(s) 46, 130, 187, 367, 402
TfiI GAWTC 2 cut(s) 52, 385
Tru1I TTAA 1 cut(s) 377
Tru9I TTAA 1 cut(s) 377
TscAI CASTG 2 cut(s) 63, 201
TseI GCWGC 2 cut(s) 319, 463
TspDTI ATGAA 2 cut(s) 243, 265
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 2 cut(s) 63, 201
Tth111I GACNNNGTC 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 125
XapI RAATTY 4 cut(s) 46, 187, 367, 402
XceI RCATGY 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.