RchiOBHm_Chr7g0217491

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
35381514 .. 35383577
2064 bp
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UTR
Exon/CDS
Intron
PRQ19463

Sequence Viewer

Length: 276 bp
ATGATTTTGATGAAGGCCTATGATTTGAGTACTGCCAGCGTCCTTGTATCATTTGATATCAGTGGCCTTTGCACTTCCAAAAGGCTGCAAGCTGATGCAAATCTCTTAGAACCCATTAGTTTTCTCAAGGTGACTATTTTCGCACTTGGAGTTCGATTTGCAGCAAAAGATTTGAAGGTTTTGAGGAAAAGATTTATATACGGAGACATACACATGGTGATAGACATTTTGTCCACAGTGAAGAAAAAGAAGGTTATGGGTCAAGTGGTGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.09

Weight (kDa)

9.87

Isoelectric Point (pI)

28.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 217
AfaI GTAC 1 cut(s) 31
AgsI TTSAA 1 cut(s) 175
AhdI GACNNNNNGTC 1 cut(s) 229
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 198
AoxI GGCC 2 cut(s) 15, 64
ApeKI GCWGC 2 cut(s) 85, 161
AsuHPI GGTGA 2 cut(s) 142, 229
BbvI GCAGC 2 cut(s) 72, 173
BcoDI GTCTC 1 cut(s) 198
BisI GCNGC 2 cut(s) 86, 162
BlsI GCNGC 2 cut(s) 87, 163
BmcAI AGTACT 1 cut(s) 31
BmeRI GACNNNNNGTC 1 cut(s) 229
BmsI GCATC 1 cut(s) 85
BpuEI CTTGAG 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 99
Bse8I GATNNNNATC 1 cut(s) 99
BseJI GATNNNNATC 1 cut(s) 99
BseXI GCAGC 2 cut(s) 72, 173
BshFI GGCC 2 cut(s) 17, 66
BsmAI GTCTC 1 cut(s) 198
BsnI GGCC 2 cut(s) 17, 66
BspANI GGCC 2 cut(s) 17, 66
Bst4CI ACNGT 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 37, 90
BstDEI CTNAG 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 198
BstV1I GCAGC 2 cut(s) 72, 173
BsuRI GGCC 2 cut(s) 17, 66
BtsIMutI CAGTG 2 cut(s) 67, 243
Cac8I GCNNGC 2 cut(s) 37, 90
CseI GACGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 30
CviAII CATG 1 cut(s) 214
CviJI RGCY 4 cut(s) 17, 66, 85, 92
CviKI_1 RGCY 4 cut(s) 17, 66, 85, 92
CviQI GTAC 1 cut(s) 30
DdeI CTNAG 1 cut(s) 106
DraIII CACNNNGTG 1 cut(s) 217
DriI GACNNNNNGTC 1 cut(s) 229
Eam1105I GACNNNNNGTC 1 cut(s) 229
Eco147I AGGCCT 1 cut(s) 17
Eco32I GATATC 1 cut(s) 58
EcoRV GATATC 1 cut(s) 58
FaeI CATG 1 cut(s) 217
FaiI YATR 6 cut(s) 21, 197, 199, 209, 215, 257
FatI CATG 1 cut(s) 213
Fnu4HI GCNGC 2 cut(s) 86, 162
Fsp4HI GCNGC 2 cut(s) 86, 162
GluI GCNGC 2 cut(s) 86, 162
HaeIII GGCC 2 cut(s) 17, 66
HgaI GACGC 1 cut(s) 28
Hin1II CATG 1 cut(s) 217
HphI GGTGA 2 cut(s) 142, 229
Hpy166II GTNNAC 1 cut(s) 234
Hpy8I GTNNAC 1 cut(s) 234
HpyAV CCTTC 3 cut(s) 7, 169, 244
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 4 cut(s) 72, 88, 98, 161
HpyF3I CTNAG 1 cut(s) 106
Hsp92II CATG 1 cut(s) 217
LpnPI CCDG 1 cut(s) 49
Lsp1109I GCAGC 2 cut(s) 72, 173
LweI GCATC 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 130
MboII GAAGA 1 cut(s) 253
MnlI CCTC 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 212
NlaIII CATG 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 130
PceI AGGCCT 1 cut(s) 17
PkrI GCNGC 2 cut(s) 87, 163
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
RseI CAYNNNNRTG 1 cut(s) 212
SatI GCNGC 2 cut(s) 86, 162
ScaI AGTACT 1 cut(s) 31
SetI ASST 4 cut(s) 94, 132, 180, 255
SfaNI GCATC 1 cut(s) 85
SgeI CNNG 6 cut(s) 48, 56, 101, 139, 158, 226
SmiMI CAYNNNNRTG 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SseBI AGGCCT 1 cut(s) 17
StuI AGGCCT 1 cut(s) 17
TaaI ACNGT 1 cut(s) 238
TaqI TCGA 1 cut(s) 154
TatI WGTACW 1 cut(s) 29
TscAI CASTG 2 cut(s) 67, 243
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 2 cut(s) 85, 161
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 26
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 2 cut(s) 67, 243
ZrmI AGTACT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.