RchiOBHm_Chr2g0140331

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008162
Physical Location & Seq
Reverse (-)
57714994 .. 57717021
2028 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51078

Sequence Viewer

Length: 357 bp
ATGGATTCAACAATGGCTGTTGATATTGTCCCTGTAATTGGAAGTGGAAGTGGAAGTGGAAGTAGAAGTGAAGAATCAAGCGACTGTCCAAAGAACGCAAAGGAAGTTCCTACTTCGAAAAAGGCAAAGTCTGCTGCAATGAAGAGGAAGAGAAAAGGCAGAGCTGCTGTGACAAGAGAGAGGTCCAAGAACAAGAGAAAGAAGAACAAGAAAAAAGAGAGAAGCGTGCTGCAGCAAAGGCCCCAAAACTGCAGAAGAAGTCTGATGCATCAAAAGCAGCCAAAAAATGATCAAACTGAAATATTGATCGACGTTGGACATATGCTTGCTGCCTTGGAGACCTGCTTGCTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.11

Weight (kDa)

10.36

Isoelectric Point (pI)

80.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 1 cut(s) 9
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 332
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 6 cut(s) 134, 164, 229, 232, 277, 329
AspS9I GGNCC 2 cut(s) 183, 240
AsuII TTCGAA 1 cut(s) 116
AvaII GGWCC 1 cut(s) 183
BbvI GCAGC 6 cut(s) 121, 151, 216, 244, 289, 316
BclI TGATCA 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 332
BfmI CTRYAG 2 cut(s) 230, 250
BfuAI ACCTGC 1 cut(s) 350
BisI GCNGC 6 cut(s) 135, 165, 230, 233, 278, 330
BlsI GCNGC 6 cut(s) 136, 166, 231, 234, 279, 331
Bme18I GGWCC 1 cut(s) 183
BmgT120I GGNCC 2 cut(s) 183, 240
BmiI GGNNCC 1 cut(s) 242
BmsI GCATC 2 cut(s) 255, 277
Bpu14I TTCGAA 1 cut(s) 116
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 333
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 333
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMI GCAATG 1 cut(s) 144
BseXI GCAGC 6 cut(s) 121, 151, 216, 244, 289, 316
BshFI GGCC 1 cut(s) 241
BslFI GGGAC 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 14
BsnI GGCC 1 cut(s) 241
Bso31I GGTCTC 1 cut(s) 332
Bsp119I TTCGAA 1 cut(s) 116
Bsp143I GATC 2 cut(s) 289, 306
BspANI GGCC 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 242
BspMAI CTGCAG 2 cut(s) 234, 254
BspMI ACCTGC 1 cut(s) 350
BspT104I TTCGAA 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 2 cut(s) 289, 306
BssT1I CCWWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 86
Bst6I CTCTTC 2 cut(s) 137, 143
BstAPI GCANNNNNTGC 1 cut(s) 131
BstBI TTCGAA 1 cut(s) 116
BstC8I GCNNGC 3 cut(s) 227, 327, 347
BstKTI GATC 2 cut(s) 292, 309
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 2 cut(s) 289, 306
BstMWI GCNNNNNNNGC 3 cut(s) 131, 238, 274
BstSFI CTRYAG 2 cut(s) 230, 250
BstV1I GCAGC 6 cut(s) 121, 151, 216, 244, 289, 316
BsuRI GGCC 1 cut(s) 241
BveI ACCTGC 1 cut(s) 350
Cac8I GCNNGC 3 cut(s) 227, 327, 347
Cfr13I GGNCC 2 cut(s) 183, 240
CviJI RGCY 4 cut(s) 17, 164, 241, 280
CviKI_1 RGCY 4 cut(s) 17, 164, 241, 280
DpnI GATC 2 cut(s) 291, 308
DpnII GATC 2 cut(s) 289, 306
Eam1104I CTCTTC 2 cut(s) 137, 143
EarI CTCTTC 2 cut(s) 137, 143
Eco130I CCWWGG 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 333
EcoT22I ATGCAT 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 333
FaiI YATR 2 cut(s) 321, 323
FaqI GGGAC 1 cut(s) 14
FauNDI CATATG 1 cut(s) 321
FbaI TGATCA 1 cut(s) 289
Fnu4HI GCNGC 6 cut(s) 135, 165, 230, 233, 278, 330
Fsp4HI GCNGC 6 cut(s) 135, 165, 230, 233, 278, 330
GluI GCNGC 6 cut(s) 135, 165, 230, 233, 278, 330
HaeIII GGCC 1 cut(s) 241
HinfI GANTC 2 cut(s) 5, 74
Hpy188I TCNGA 1 cut(s) 264
Hpy99I CGWCG 1 cut(s) 314
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 4 cut(s) 137, 232, 252, 268
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 238, 274
HpySE526I ACGT 1 cut(s) 312
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 2 cut(s) 289, 306
LpnPI CCDG 1 cut(s) 45
Lsp1109I GCAGC 6 cut(s) 121, 151, 216, 244, 289, 316
LweI GCATC 2 cut(s) 255, 277
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 169
MalI GATC 2 cut(s) 291, 308
MboI GATC 2 cut(s) 289, 306
MboII GAAGA 5 cut(s) 83, 154, 160, 214, 267
MluCI AATT 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 2 cut(s) 138, 174
Mph1103I ATGCAT 1 cut(s) 270
MwoI GCNNNNNNNGC 3 cut(s) 131, 238, 274
NdeI CATATG 1 cut(s) 321
NdeII GATC 2 cut(s) 289, 306
NlaIV GGNNCC 1 cut(s) 242
NmuCI GTSAC 1 cut(s) 169
NsiI ATGCAT 1 cut(s) 270
NspV TTCGAA 1 cut(s) 116
PfeI GAWTC 2 cut(s) 5, 74
PkrI GCNGC 6 cut(s) 136, 166, 231, 234, 279, 331
PspN4I GGNNCC 1 cut(s) 242
PspPI GGNCC 2 cut(s) 183, 240
PstI CTGCAG 2 cut(s) 234, 254
SatI GCNGC 6 cut(s) 135, 165, 230, 233, 278, 330
Sau3AI GATC 2 cut(s) 289, 306
Sau96I GGNCC 2 cut(s) 183, 240
SetI ASST 4 cut(s) 166, 185, 315, 344
SfaNI GCATC 2 cut(s) 255, 277
SfcI CTRYAG 2 cut(s) 230, 250
SfuI TTCGAA 1 cut(s) 116
SgeI CNNG 9 cut(s) 44, 90, 186, 199, 205, 220, 238, 338, 346
SinI GGWCC 1 cut(s) 183
Sse9I AATT 1 cut(s) 36
SspI AATATT 1 cut(s) 303
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 1 cut(s) 86
TaiI ACGT 1 cut(s) 315
TaqI TCGA 2 cut(s) 116, 309
TasI AATT 1 cut(s) 36
TfiI GAWTC 2 cut(s) 5, 74
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 6 cut(s) 134, 164, 229, 232, 277, 329
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 183
Zsp2I ATGCAT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.