Rorug06G0053200

membrane protein At1g06890-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008162
Physical Location & Seq
Reverse (-)
7404660 .. 7406626
1967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0053200.1

Sequence Viewer

Length: 984 bp
ATGAAGATGTTGCCCAATCAAACCTTTTCTCGTATTGACACTTTGGAGCTGAAATCGATGATTGTTCGAAAGATTGGGCATGAGAGAGCTGAGAAATACTTTGAACTGATCAGAAGATTGTTTAGTTTGAAGATTAGTAAGGGTGAATTCAACAAGTTCTGCATTAGGATTATTGGAAGGGACAATCTTCCTCTTCATAACCGGCTTATTAAATCGATCATCAAGAATGCACACCTTGCAAAAGCTCCACCTTTGACAAGTTTTAGGAAACCCGGAAGCACTCTTACTGTTAAAGTTGCAAATGGATATAAGAGGAATGGAGATGCAATTCCTCAATCCCCTCTGACGGGCCGGTCTGCAGTTAATGGAGACCACAAGTTTCGTGACCGTCCAAGTCCTTTGGGGCCAAATGGGAAGCCCCAAGATGTTGCATATGAGGAAGCAGTTTCCAAAGCACAAGTACAGCAAAGTGCTGCTGAATTGCTTTCTCTTGGCAGTAGGCCTCCAATTGAAGTAGCCTCGGTGGAAGATGGAGAAGAGGTTGAACAGGCTGCAGGAAGCCCGAGTATTCAAAGTAGAAGCCCAGTAACAGCTCCTTTTGGTATATCCATGAATTTGGGTGGATCACGCAAATTTCTCCATAATGCATCAGTATGTCGTACATATCACCTGGAAACCTGTCAAAACCACGGTGAGCTACCTGATACAAGATCATTAAGAAGTCGTTTGGATCGGAAATTGCAGATGGAGGGCATGAATGCTTCTGTTGACTGTGTTAACCTCTTGAATATCGGATTAGATGCTTATCTCAAGAGATTAATTGAACCTTGTATAAGGTTTGTTGGGATGAGGCAAAGAGAAACAAAATCTACTTGCGCAACTATGTTAGATTTTTGTGCAGCAGTGGAGTTAAATCCTCAGATACTCGGTGAAGATTGGGGCATACAGCTAGAGAAGGTTGTCTCGCGTGCTTCTGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

327

Amino Acids

36.34

Weight (kDa)

9.38

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAGA-Tad1 PF12767 8 - 280 1e-56 Transcriptional regulator of RNA polII, SAGA, subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 352
Acc16I TGCGCA 1 cut(s) 877
AccII CGCG 1 cut(s) 967
AclWI GGATC 2 cut(s) 631, 738
AcsI RAATTY 3 cut(s) 146, 613, 632
AfaI GTAC 2 cut(s) 462, 661
AfiI CCNNNNNNNGG 2 cut(s) 346, 347
AgsI TTSAA 8 cut(s) 104, 130, 151, 512, 545, 572, 787, 824
AjnI CCWGG 1 cut(s) 669
AluBI AGCT 6 cut(s) 49, 89, 245, 593, 697, 949
AluI AGCT 6 cut(s) 49, 89, 245, 593, 697, 949
Alw26I GTCTC 2 cut(s) 363, 967
AlwI GGATC 2 cut(s) 631, 738
Ama87I CYCGRG 1 cut(s) 562
AoxI GGCC 3 cut(s) 349, 404, 500
ApeKI GCWGC 3 cut(s) 473, 551, 899
ApoI RAATTY 3 cut(s) 146, 613, 632
AseI ATTAAT 1 cut(s) 818
AspLEI GCGC 1 cut(s) 878
AspS9I GGNCC 2 cut(s) 349, 404
AsuC2I CCSGG 1 cut(s) 273
AsuHPI GGTGA 4 cut(s) 155, 659, 704, 941
AsuII TTCGAA 1 cut(s) 67
AvaI CYCGRG 1 cut(s) 562
BarI GAAGNNNNNNTAC 2 cut(s) 268, 300
BbvI GCAGC 3 cut(s) 460, 538, 911
BccI CCATC 2 cut(s) 524, 739
BciT130I CCWGG 1 cut(s) 671
BclI TGATCA 1 cut(s) 108
BcnI CCSGG 1 cut(s) 273
BcoDI GTCTC 2 cut(s) 363, 967
BfaI CTAG 1 cut(s) 950
BfmI CTRYAG 2 cut(s) 357, 552
BisI GCNGC 3 cut(s) 474, 552, 900
BlsI GCNGC 3 cut(s) 475, 553, 901
Bme1390I CCNGG 2 cut(s) 273, 671
BmeT110I CYCGRG 1 cut(s) 562
BmgT120I GGNCC 2 cut(s) 349, 404
BmiI GGNNCC 1 cut(s) 405
BmrFI CCNGG 2 cut(s) 273, 671
BmrI ACTGGG 1 cut(s) 578
BmsI GCATC 3 cut(s) 313, 656, 790
BmuI ACTGGG 1 cut(s) 578
Bpu14I TTCGAA 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 794
BpuMI CCSGG 1 cut(s) 273
Bsa29I ATCGAT 2 cut(s) 56, 215
BsaBI GATNNNNATC 1 cut(s) 804
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 519, 688
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 347
Bse118I RCCGGY 2 cut(s) 201, 351
Bse1I ACTGG 1 cut(s) 584
Bse8I GATNNNNATC 1 cut(s) 804
BseBI CCWGG 1 cut(s) 671
BseCI ATCGAT 2 cut(s) 56, 215
BseDI CCNNGG 2 cut(s) 519, 688
BseGI GGATG 1 cut(s) 852
BseJI GATNNNNATC 1 cut(s) 804
BseLI CCNNNNNNNGG 2 cut(s) 346, 347
BseMII CTCAG 2 cut(s) 81, 932
BseNI ACTGG 1 cut(s) 584
BseXI GCAGC 3 cut(s) 460, 538, 911
BsgI GTGCAG 1 cut(s) 918
Bsh1236I CGCG 1 cut(s) 967
BshFI GGCC 3 cut(s) 351, 406, 502
BshVI ATCGAT 2 cut(s) 56, 215
BsiHKCI CYCGRG 1 cut(s) 562
BsiSI CCGG 3 cut(s) 202, 273, 352
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 2 cut(s) 346, 347
BsmAI GTCTC 2 cut(s) 363, 967
BsmFI GGGAC 1 cut(s) 194
BsmI GAATGC 2 cut(s) 232, 763
BsnI GGCC 3 cut(s) 351, 406, 502
Bso31I GGTCTC 1 cut(s) 363
BsoBI CYCGRG 1 cut(s) 562
Bsp119I TTCGAA 1 cut(s) 67
Bsp143I GATC 5 cut(s) 108, 216, 623, 710, 730
BspANI GGCC 3 cut(s) 351, 406, 502
BspCNI CTCAG 2 cut(s) 82, 931
BspDI ATCGAT 2 cut(s) 56, 215
BspFNI CGCG 1 cut(s) 967
BspLI GGNNCC 1 cut(s) 405
BspMAI CTGCAG 2 cut(s) 361, 556
BspPI GGATC 2 cut(s) 631, 738
BspT104I TTCGAA 1 cut(s) 67
BspTNI GGTCTC 1 cut(s) 363
BsrFI RCCGGY 2 cut(s) 201, 351
BsrI ACTGG 1 cut(s) 584
BssAI RCCGGY 2 cut(s) 201, 351
BssECI CCNNGG 2 cut(s) 519, 688
BssMI GATC 5 cut(s) 108, 216, 623, 710, 730
Bst2UI CCWGG 1 cut(s) 671
Bst4CI ACNGT 4 cut(s) 289, 389, 692, 773
Bst6I CTCTTC 2 cut(s) 198, 531
BstAPI GCANNNNNTGC 1 cut(s) 236
BstBI TTCGAA 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 969
BstDEI CTNAG 2 cut(s) 90, 918
BstDSI CCRYGG 1 cut(s) 688
BstF5I GGATG 1 cut(s) 852
BstFNI CGCG 1 cut(s) 967
BstHHI GCGC 1 cut(s) 878
BstKTI GATC 5 cut(s) 111, 219, 626, 713, 733
BstMAI GTCTC 2 cut(s) 363, 967
BstMBI GATC 5 cut(s) 108, 216, 623, 710, 730
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 671
BstSCI CCNGG 2 cut(s) 271, 669
BstSFI CTRYAG 2 cut(s) 357, 552
BstUI CGCG 1 cut(s) 967
BstV1I GCAGC 3 cut(s) 460, 538, 911
BstXI CCANNNNNNTGG 1 cut(s) 616
Bsu15I ATCGAT 2 cut(s) 56, 215
BsuRI GGCC 3 cut(s) 351, 406, 502
BsuTUI ATCGAT 2 cut(s) 56, 215
BtgI CCRYGG 1 cut(s) 688
BtsCI GGATG 1 cut(s) 852
BtsI GCAGTG 1 cut(s) 909
BtsIMutI CAGTG 1 cut(s) 909
Cac8I GCNNGC 1 cut(s) 969
CfoI GCGC 1 cut(s) 878
Cfr10I RCCGGY 2 cut(s) 201, 351
Cfr13I GGNCC 2 cut(s) 349, 404
ClaI ATCGAT 2 cut(s) 56, 215
Csp6I GTAC 2 cut(s) 461, 660
CviAII CATG 3 cut(s) 80, 610, 754
CviQI GTAC 2 cut(s) 461, 660
DdeI CTNAG 2 cut(s) 90, 918
DpnI GATC 5 cut(s) 110, 218, 625, 712, 732
DpnII GATC 5 cut(s) 108, 216, 623, 710, 730
DrdI GACNNNNNNGTC 1 cut(s) 352
DseDI GACNNNNNNGTC 1 cut(s) 352
Eam1104I CTCTTC 2 cut(s) 198, 531
EarI CTCTTC 2 cut(s) 198, 531
Eco147I AGGCCT 1 cut(s) 502
Eco31I GGTCTC 1 cut(s) 363
Eco88I CYCGRG 1 cut(s) 562
EcoRI GAATTC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 669
EcoT22I ATGCAT 1 cut(s) 649
FaeI CATG 3 cut(s) 83, 613, 757
FaqI GGGAC 1 cut(s) 194
FatI CATG 3 cut(s) 79, 609, 753
FauNDI CATATG 1 cut(s) 433
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 3 cut(s) 474, 552, 900
FokI GGATG 1 cut(s) 859
Fsp4HI GCNGC 3 cut(s) 474, 552, 900
FspBI CTAG 1 cut(s) 950
FspI TGCGCA 1 cut(s) 877
GlaI GCGC 1 cut(s) 877
GluI GCNGC 3 cut(s) 474, 552, 900
HaeIII GGCC 3 cut(s) 351, 406, 502
HapII CCGG 3 cut(s) 202, 273, 352
HhaI GCGC 1 cut(s) 878
Hin1II CATG 3 cut(s) 83, 613, 757
Hin6I GCGC 1 cut(s) 876
HinP1I GCGC 1 cut(s) 876
HincII GTYRAC 2 cut(s) 769, 778
HindII GTYRAC 2 cut(s) 769, 778
HpaI GTTAAC 1 cut(s) 778
HpaII CCGG 3 cut(s) 202, 273, 352
HphI GGTGA 4 cut(s) 155, 659, 704, 941
Hpy166II GTNNAC 2 cut(s) 769, 778
Hpy188I TCNGA 6 cut(s) 113, 345, 735, 794, 921, 976
Hpy188III TCNNGA 4 cut(s) 223, 383, 784, 811
Hpy8I GTNNAC 2 cut(s) 769, 778
HpyAV CCTTC 2 cut(s) 171, 949
HpyCH4III ACNGT 4 cut(s) 289, 389, 692, 773
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 2 cut(s) 90, 918
Hsp92II CATG 3 cut(s) 83, 613, 757
HspAI GCGC 1 cut(s) 876
Ksp22I TGATCA 1 cut(s) 108
KspAI GTTAAC 1 cut(s) 778
Kzo9I GATC 5 cut(s) 108, 216, 623, 710, 730
LmnI GCTCC 3 cut(s) 46, 250, 598
Lsp1109I GCAGC 3 cut(s) 460, 538, 911
LweI GCATC 3 cut(s) 313, 656, 790
MaeI CTAG 1 cut(s) 950
MaeIII GTNAC 2 cut(s) 383, 586
MalI GATC 5 cut(s) 110, 218, 625, 712, 732
MboI GATC 5 cut(s) 108, 216, 623, 710, 730
MboII GAAGA 8 cut(s) 16, 126, 142, 179, 185, 539, 548, 944
MfeI CAATTG 1 cut(s) 507
MluCI AATT 8 cut(s) 146, 327, 479, 507, 613, 632, 737, 819
Mph1103I ATGCAT 1 cut(s) 649
MseI TTAA 7 cut(s) 210, 291, 363, 716, 777, 818, 911
MslI CAYNNNNRTG 1 cut(s) 652
MspI CCGG 3 cut(s) 202, 273, 352
MspR9I CCNGG 2 cut(s) 273, 671
MunI CAATTG 1 cut(s) 507
Mva1269I GAATGC 2 cut(s) 232, 763
MvaI CCWGG 1 cut(s) 671
MvnI CGCG 1 cut(s) 967
MwoI GCNNNNNNNGC 1 cut(s) 236
NciI CCSGG 1 cut(s) 273
NdeI CATATG 1 cut(s) 433
NdeII GATC 5 cut(s) 108, 216, 623, 710, 730
NlaIII CATG 3 cut(s) 83, 613, 757
NlaIV GGNNCC 1 cut(s) 405
NmuCI GTSAC 1 cut(s) 383
NsbI TGCGCA 1 cut(s) 877
NsiI ATGCAT 1 cut(s) 649
NspV TTCGAA 1 cut(s) 67
PceI AGGCCT 1 cut(s) 502
PctI GAATGC 2 cut(s) 232, 763
PkrI GCNGC 3 cut(s) 475, 553, 901
PshBI ATTAAT 1 cut(s) 818
Psp6I CCWGG 1 cut(s) 669
PspGI CCWGG 1 cut(s) 669
PspN4I GGNNCC 1 cut(s) 405
PspPI GGNCC 2 cut(s) 349, 404
PstI CTGCAG 2 cut(s) 361, 556
RsaI GTAC 2 cut(s) 462, 661
RsaNI GTAC 2 cut(s) 461, 660
RseI CAYNNNNRTG 1 cut(s) 652
SaqAI TTAA 7 cut(s) 210, 291, 363, 716, 777, 818, 911
SatI GCNGC 3 cut(s) 474, 552, 900
Sau3AI GATC 5 cut(s) 108, 216, 623, 710, 730
Sau96I GGNCC 2 cut(s) 349, 404
ScrFI CCNGG 2 cut(s) 273, 671
SfaNI GCATC 3 cut(s) 313, 656, 790
SfcI CTRYAG 2 cut(s) 357, 552
SfuI TTCGAA 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 652
SmlI CTYRAG 1 cut(s) 809
SmoI CTYRAG 1 cut(s) 809
Sse9I AATT 8 cut(s) 146, 327, 479, 507, 613, 632, 737, 819
SseBI AGGCCT 1 cut(s) 502
SspMI CTAG 1 cut(s) 950
StuI AGGCCT 1 cut(s) 502
StyD4I CCNGG 2 cut(s) 271, 669
TaaI ACNGT 4 cut(s) 289, 389, 692, 773
TaqI TCGA 3 cut(s) 56, 67, 215
TasI AATT 8 cut(s) 146, 327, 479, 507, 613, 632, 737, 819
TatI WGTACW 1 cut(s) 460
Tru1I TTAA 7 cut(s) 210, 291, 363, 716, 777, 818, 911
Tru9I TTAA 7 cut(s) 210, 291, 363, 716, 777, 818, 911
TscAI CASTG 1 cut(s) 909
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 3 cut(s) 473, 551, 899
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 4 cut(s) 17, 185, 626, 770
TspRI CASTG 1 cut(s) 909
VspI ATTAAT 1 cut(s) 818
XapI RAATTY 3 cut(s) 146, 613, 632
XspI CTAG 1 cut(s) 950
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.